Rh7AG064500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
4466889 .. 4467573
685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG064500.1

Sequence Viewer

Length: 408 bp
ATGCCATGCAAAATATCTCCACCAAGGAGGGATAGGCACCAAACCCAACACTCGCTGGGTGGCATTGTGGGCGAGCAAGTGGAGGAGCTACTCAACAAAGAAGAGAACAGGGTGTTGCTTGATGGGTTGGTCAAAGCGTCCGAGAGGGTAGAGAATGCCAAAACAGAACTCGCTGAGATTGAAAGACAAGAACTTGAGGCTAAGCTTGCAAGGGAGTATATTAACAAACTTGAAACCAGGGCTTCTGAGATTGATGAATGTCAAAAGGAGATATCAGAGGCAAAAGCCATGGTGGAAGAAGCCGAACGTGCCCTCACACAAACTGGGGATCAATTCGGAAATGATTTGCTTCTGCAGAGTCTGAGAATGGGGAAATTGACGAGGATCAAGAGAAGTTGGTATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.5

Weight (kDa)

5.38

Isoelectric Point (pI)

57.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0023099)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003832.1_g000015 Rmu_sc0008051.1_g000006
rosa_samantha Rh7AG064500 Rh7CG083100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 36
AclWI GGATC 2 cut(s) 336, 392
AgsI TTSAA 2 cut(s) 182, 233
AjnI CCWGG 1 cut(s) 236
AluBI AGCT 2 cut(s) 88, 205
AluI AGCT 2 cut(s) 88, 205
AlwI GGATC 2 cut(s) 336, 392
AlwNI CAGNNNCTG 1 cut(s) 361
BaeGI GKGCMC 1 cut(s) 313
BanI GGYRCC 1 cut(s) 36
BccI CCATC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 238
BfmI CTRYAG 1 cut(s) 353
BlpI GCTNAGC 1 cut(s) 201
Bme1390I CCNGG 1 cut(s) 238
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 238
BmrI ACTGGG 1 cut(s) 333
BmuI ACTGGG 1 cut(s) 333
Bpu1102I GCTNAGC 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 215
BsaJI CCNNGG 3 cut(s) 23, 237, 288
Bse1I ACTGG 1 cut(s) 328
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 3 cut(s) 23, 237, 288
BseMII CTCAG 3 cut(s) 165, 237, 353
BseNI ACTGG 1 cut(s) 328
BseRI GAGGAG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 313
BseYI CCCAGC 1 cut(s) 55
BshNI GGYRCC 1 cut(s) 36
BsmI GAATGC 1 cut(s) 160
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 2 cut(s) 328, 384
Bsp1720I GCTNAGC 1 cut(s) 201
Bsp19I CCATGG 1 cut(s) 288
BspCNI CTCAG 3 cut(s) 166, 238, 354
BspLI GGNNCC 1 cut(s) 38
BspMAI CTGCAG 1 cut(s) 357
BspPI GGATC 2 cut(s) 336, 392
BspT107I GGYRCC 1 cut(s) 36
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 3 cut(s) 23, 237, 288
BssMI GATC 2 cut(s) 328, 384
BssT1I CCWWGG 2 cut(s) 23, 288
Bst2UI CCWGG 1 cut(s) 238
Bst6I CTCTTC 1 cut(s) 96
BstC8I GCNNGC 2 cut(s) 74, 207
BstDEI CTNAG 4 cut(s) 174, 201, 246, 362
BstDSI CCRYGG 1 cut(s) 288
BstKTI GATC 2 cut(s) 331, 387
BstMBI GATC 2 cut(s) 328, 384
BstMWI GCNNNNNNNGC 3 cut(s) 69, 206, 308
BstNI CCWGG 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 236
BstSFI CTRYAG 1 cut(s) 353
BstSLI GKGCMC 1 cut(s) 313
BtgI CCRYGG 1 cut(s) 288
Cac8I GCNNGC 2 cut(s) 74, 207
CaiI CAGNNNCTG 1 cut(s) 361
CseI GACGC 1 cut(s) 126
CviAII CATG 2 cut(s) 6, 289
CviJI RGCY 6 cut(s) 88, 200, 205, 242, 287, 302
CviKI_1 RGCY 6 cut(s) 88, 200, 205, 242, 287, 302
DdeI CTNAG 4 cut(s) 174, 201, 246, 362
DpnI GATC 2 cut(s) 330, 386
DpnII GATC 2 cut(s) 328, 384
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco130I CCWWGG 2 cut(s) 23, 288
Eco32I GATATC 1 cut(s) 273
EcoRII CCWGG 1 cut(s) 236
EcoRV GATATC 1 cut(s) 273
EcoT14I CCWWGG 2 cut(s) 23, 288
ErhI CCWWGG 2 cut(s) 23, 288
FaeI CATG 2 cut(s) 9, 292
FaiI YATR 4 cut(s) 7, 219, 290, 406
FatI CATG 2 cut(s) 5, 288
GsaI CCCAGC 1 cut(s) 59
HgaI GACGC 1 cut(s) 126
Hin1II CATG 2 cut(s) 9, 292
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 1 cut(s) 358
Hpy188I TCNGA 5 cut(s) 142, 247, 277, 338, 363
Hpy188III TCNNGA 1 cut(s) 388
HpyCH4IV ACGT 1 cut(s) 307
HpyCH4V TGCA 3 cut(s) 9, 209, 355
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 206, 308
HpyF3I CTNAG 4 cut(s) 174, 201, 246, 362
HpySE526I ACGT 1 cut(s) 307
Hsp92II CATG 2 cut(s) 9, 292
Kzo9I GATC 2 cut(s) 328, 384
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 5 cut(s) 41, 94, 223, 250, 309
MaeII ACGT 1 cut(s) 307
MalI GATC 2 cut(s) 330, 386
MboI GATC 2 cut(s) 328, 384
MboII GAAGA 2 cut(s) 113, 308
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 2 cut(s) 332, 374
MlyI GAGTC 1 cut(s) 367
MnlI CCTC 7 cut(s) 21, 76, 138, 190, 271, 323, 375
MseI TTAA 1 cut(s) 222
MspR9I CCNGG 1 cut(s) 238
Mva1269I GAATGC 1 cut(s) 160
MvaI CCWGG 1 cut(s) 238
MwoI GCNNNNNNNGC 3 cut(s) 69, 206, 308
NcoI CCATGG 1 cut(s) 288
NdeII GATC 2 cut(s) 328, 384
NlaIII CATG 2 cut(s) 9, 292
NlaIV GGNNCC 1 cut(s) 38
PctI GAATGC 1 cut(s) 160
PleI GAGTC 1 cut(s) 366
PpsI GAGTC 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 236
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 1 cut(s) 38
PstI CTGCAG 1 cut(s) 357
PstNI CAGNNNCTG 1 cut(s) 361
SaqAI TTAA 1 cut(s) 222
Sau3AI GATC 2 cut(s) 328, 384
SchI GAGTC 1 cut(s) 367
ScrFI CCNGG 1 cut(s) 238
SduI GDGCHC 1 cut(s) 313
SetI ASST 3 cut(s) 90, 207, 310
SfcI CTRYAG 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 2 cut(s) 332, 374
StyD4I CCNGG 1 cut(s) 236
StyI CCWWGG 2 cut(s) 23, 288
TaiI ACGT 1 cut(s) 310
TasI AATT 2 cut(s) 332, 374
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TspDTI ATGAA 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.