Rmu_sc0008051.1_g000006

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008051.1
Physical Location & Seq
Forward (+)
17797 .. 18481
685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008051.1_g000006.1.cds

Sequence Viewer

Length: 450 bp
atgccatgcaaaatatctccaccaatgagggataggcaccaaacccaacactcgctgggtggcattgtgggcgagcaagtggaggagctactcaacaaagaagagaacagggtgttgcttgatgggttggtcaaagcgtccgagagggtagagaatgccaaaacagaactcgctgagattgaaagacaagaacttgaggctaagcttgcaagggagtatattaacaaacttgaaaccagggcttctgaggtcaacactgttttcagttctcattttagtttgcttttctggattgatgaatgtcaaaaggagatatcagaggcaaaagccatggtggaagaagccgaacgtgccctcacacaaactggggatcaattcggaaatgatttgcttctgcagagtctgagaatggggaaattgacgaggatcaagagaagttggtatccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

17.14

Weight (kDa)

5.35

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0023099)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003832.1_g000015 Rmu_sc0008051.1_g000006
rosa_samantha Rh7AG064500 Rh7CG083100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 36
AclWI GGATC 2 cut(s) 378, 434
AgsI TTSAA 2 cut(s) 182, 233
AjnI CCWGG 1 cut(s) 236
AluBI AGCT 2 cut(s) 88, 205
AluI AGCT 2 cut(s) 88, 205
AlwI GGATC 2 cut(s) 378, 434
AlwNI CAGNNNCTG 1 cut(s) 403
BaeGI GKGCMC 1 cut(s) 355
BanI GGYRCC 1 cut(s) 36
BccI CCATC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 238
BfmI CTRYAG 1 cut(s) 395
BlpI GCTNAGC 1 cut(s) 201
Bme1390I CCNGG 1 cut(s) 238
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 238
BmrI ACTGGG 1 cut(s) 375
BmuI ACTGGG 1 cut(s) 375
Bpu1102I GCTNAGC 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 215
BsaJI CCNNGG 2 cut(s) 237, 330
Bse1I ACTGG 1 cut(s) 370
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 2 cut(s) 237, 330
BseMII CTCAG 3 cut(s) 165, 237, 395
BseNI ACTGG 1 cut(s) 370
BseRI GAGGAG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 355
BseYI CCCAGC 1 cut(s) 55
BshNI GGYRCC 1 cut(s) 36
BsmI GAATGC 1 cut(s) 160
Bsp1286I GDGCHC 1 cut(s) 355
Bsp143I GATC 2 cut(s) 370, 426
Bsp1720I GCTNAGC 1 cut(s) 201
Bsp19I CCATGG 1 cut(s) 330
BspCNI CTCAG 3 cut(s) 166, 238, 396
BspLI GGNNCC 1 cut(s) 38
BspMAI CTGCAG 1 cut(s) 399
BspPI GGATC 2 cut(s) 378, 434
BspT107I GGYRCC 1 cut(s) 36
BsrI ACTGG 1 cut(s) 370
BssECI CCNNGG 2 cut(s) 237, 330
BssMI GATC 2 cut(s) 370, 426
BssT1I CCWWGG 1 cut(s) 330
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 96
BstC8I GCNNGC 2 cut(s) 74, 207
BstDEI CTNAG 4 cut(s) 174, 201, 246, 404
BstDSI CCRYGG 1 cut(s) 330
BstKTI GATC 2 cut(s) 373, 429
BstMBI GATC 2 cut(s) 370, 426
BstMWI GCNNNNNNNGC 3 cut(s) 69, 206, 350
BstNI CCWGG 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 236
BstSFI CTRYAG 1 cut(s) 395
BstSLI GKGCMC 1 cut(s) 355
BtgI CCRYGG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 2 cut(s) 74, 207
CaiI CAGNNNCTG 1 cut(s) 403
CseI GACGC 1 cut(s) 126
CviAII CATG 2 cut(s) 6, 331
CviJI RGCY 6 cut(s) 88, 200, 205, 242, 329, 344
CviKI_1 RGCY 6 cut(s) 88, 200, 205, 242, 329, 344
DdeI CTNAG 4 cut(s) 174, 201, 246, 404
DpnI GATC 2 cut(s) 372, 428
DpnII GATC 2 cut(s) 370, 426
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 330
Eco32I GATATC 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 236
EcoRV GATATC 1 cut(s) 315
EcoT14I CCWWGG 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 2 cut(s) 9, 334
FaiI YATR 4 cut(s) 7, 219, 332, 448
FatI CATG 2 cut(s) 5, 330
GsaI CCCAGC 1 cut(s) 59
HgaI GACGC 1 cut(s) 126
Hin1II CATG 2 cut(s) 9, 334
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 1 cut(s) 400
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 5 cut(s) 142, 247, 319, 380, 405
Hpy188III TCNNGA 2 cut(s) 289, 430
Hpy8I GTNNAC 1 cut(s) 253
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 349
HpyCH4V TGCA 3 cut(s) 9, 209, 397
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 206, 350
HpyF3I CTNAG 4 cut(s) 174, 201, 246, 404
HpySE526I ACGT 1 cut(s) 349
Hsp92II CATG 2 cut(s) 9, 334
Kzo9I GATC 2 cut(s) 370, 426
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 6 cut(s) 41, 94, 223, 250, 274, 351
MaeII ACGT 1 cut(s) 349
MalI GATC 2 cut(s) 372, 428
MboI GATC 2 cut(s) 370, 426
MboII GAAGA 2 cut(s) 113, 350
MhlI GDGCHC 1 cut(s) 355
MluCI AATT 2 cut(s) 374, 416
MlyI GAGTC 1 cut(s) 409
MnlI CCTC 8 cut(s) 21, 76, 138, 190, 241, 313, 365, 417
MseI TTAA 1 cut(s) 222
MspR9I CCNGG 1 cut(s) 238
Mva1269I GAATGC 1 cut(s) 160
MvaI CCWGG 1 cut(s) 238
MwoI GCNNNNNNNGC 3 cut(s) 69, 206, 350
NcoI CCATGG 1 cut(s) 330
NdeII GATC 2 cut(s) 370, 426
NlaIII CATG 2 cut(s) 9, 334
NlaIV GGNNCC 1 cut(s) 38
PctI GAATGC 1 cut(s) 160
PleI GAGTC 1 cut(s) 408
PpsI GAGTC 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 236
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 1 cut(s) 38
PstI CTGCAG 1 cut(s) 399
PstNI CAGNNNCTG 1 cut(s) 403
SaqAI TTAA 1 cut(s) 222
Sau3AI GATC 2 cut(s) 370, 426
SchI GAGTC 1 cut(s) 409
ScrFI CCNGG 1 cut(s) 238
SduI GDGCHC 1 cut(s) 355
SetI ASST 4 cut(s) 90, 207, 252, 352
SfcI CTRYAG 1 cut(s) 395
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 2 cut(s) 374, 416
StyD4I CCNGG 1 cut(s) 236
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 1 cut(s) 352
TasI AATT 2 cut(s) 374, 416
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 312
TspRI CASTG 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.