Rmu_sc0003835.1_g000013

PB1 domain containing protein, expressed

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003835.1
OG0023100
Physical Location & Seq
Reverse (-)
56167 .. 58083
1917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003835.1_g000013.1.cds

Sequence Viewer

Length: 420 bp
atggtgctagctcctgttttgatggaagtttttgtcggtcacctagcccttcagttggtggagcagtttcattgggctccggttgttttcgaatccgattgtcaacaacttgtccaagcggtacaatctgagggtgaggacaagtcagagtttggtagagtgaagacgttgctgatctccgtgctagaggatggtagcttctgcggcggtgacttgcaagaatgggaaacgaacgttcactctgtccccaattcgccgatgctcaagaactcgtcgtcgtttgggtcaacgtcgtcatctccatcgctggtcagtttgcctccaatccggctcactgcagatcagtcatctcaggtgagattcggcgctcgacctccggggcttgacctagcccctccggcgctcgacctaggccggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1

Protein Analysis

139

Amino Acids

14.99

Weight (kDa)

4.63

Isoelectric Point (pI)

56.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023100)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003835.1_g000013
rosa_samantha Rh2AG365000 Rh2CG650300 Rh2DG701200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 119, 204, 207
AclI AACGTT 1 cut(s) 234
AcuI CTGAAG 1 cut(s) 35
AfaI GTAC 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 55
AluBI AGCT 2 cut(s) 11, 198
AluI AGCT 2 cut(s) 11, 198
AoxI GGCC 1 cut(s) 412
AspA2I CCTAGG 1 cut(s) 409
AspLEI GCGC 2 cut(s) 368, 403
AsuC2I CCSGG 1 cut(s) 378
AsuHPI GGTGA 4 cut(s) 32, 146, 221, 367
AsuII TTCGAA 1 cut(s) 90
AsuNHI GCTAGC 1 cut(s) 7
AvrII CCTAGG 1 cut(s) 409
BanII GRGCYC 1 cut(s) 79
BbsI GAAGAC 1 cut(s) 170
BccI CCATC 3 cut(s) 16, 185, 310
BcnI CCSGG 1 cut(s) 378
BfaI CTAG 5 cut(s) 8, 44, 185, 389, 410
BfmI CTRYAG 1 cut(s) 336
BfoI RGCGCY 2 cut(s) 369, 404
BglI GCCNNNNNGGC 1 cut(s) 398
BisI GCNGC 1 cut(s) 205
BlnI CCTAGG 1 cut(s) 409
BlsI GCNGC 1 cut(s) 206
Bme1390I CCNGG 1 cut(s) 378
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 378
BmsI GCATC 1 cut(s) 249
BmtI GCTAGC 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 170
Bpu14I TTCGAA 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 378
BsaJI CCNNGG 2 cut(s) 377, 409
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse118I RCCGGY 1 cut(s) 414
BseDI CCNNGG 2 cut(s) 377, 409
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMII CTCAG 2 cut(s) 120, 365
BshFI GGCC 1 cut(s) 414
BsiSI CCGG 5 cut(s) 80, 328, 377, 398, 415
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 55
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 1 cut(s) 414
Bsp119I TTCGAA 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 2 cut(s) 174, 340
BspACI CCGC 3 cut(s) 119, 204, 207
BspANI GGCC 1 cut(s) 414
BspCNI CTCAG 2 cut(s) 121, 364
BspLI GGNNCC 1 cut(s) 78
BspMAI CTGCAG 1 cut(s) 340
BspOI GCTAGC 1 cut(s) 11
BspT104I TTCGAA 1 cut(s) 90
BsrFI RCCGGY 1 cut(s) 414
BssAI RCCGGY 1 cut(s) 414
BssECI CCNNGG 2 cut(s) 377, 409
BssMI GATC 2 cut(s) 174, 340
BssT1I CCWWGG 1 cut(s) 409
BstBI TTCGAA 1 cut(s) 90
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 2 cut(s) 129, 351
BstEII GGTNACC 1 cut(s) 38
BstF5I GGATG 1 cut(s) 196
BstH2I RGCGCY 2 cut(s) 369, 404
BstHHI GCGC 2 cut(s) 368, 403
BstKTI GATC 2 cut(s) 177, 343
BstMBI GATC 2 cut(s) 174, 340
BstMWI GCNNNNNNNGC 2 cut(s) 204, 398
BstPI GGTNACC 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 376
BstSFI CTRYAG 1 cut(s) 336
BstV2I GAAGAC 1 cut(s) 170
BsuRI GGCC 1 cut(s) 414
BtgZI GCGATG 1 cut(s) 288
BtsCI GGATG 1 cut(s) 196
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 1 cut(s) 333
Cac8I GCNNGC 1 cut(s) 9
CfoI GCGC 2 cut(s) 368, 403
Cfr10I RCCGGY 1 cut(s) 414
Csp6I GTAC 1 cut(s) 122
CviJI RGCY 8 cut(s) 11, 47, 77, 198, 331, 382, 392, 414
CviKI_1 RGCY 8 cut(s) 11, 47, 77, 198, 331, 382, 392, 414
CviQI GTAC 1 cut(s) 122
DdeI CTNAG 2 cut(s) 129, 351
DpnI GATC 2 cut(s) 176, 342
DpnII GATC 2 cut(s) 174, 340
Eco130I CCWWGG 1 cut(s) 409
Eco24I GRGCYC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 35
Eco91I GGTNACC 1 cut(s) 38
EcoO65I GGTNACC 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 409
EcoT38I GRGCYC 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 409
FaqI GGGAC 1 cut(s) 230
Fnu4HI GCNGC 1 cut(s) 205
FokI GGATG 1 cut(s) 203
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 205
FspBI CTAG 5 cut(s) 8, 44, 185, 389, 410
GlaI GCGC 2 cut(s) 367, 402
GluI GCNGC 1 cut(s) 205
HaeII RGCGCY 2 cut(s) 369, 404
HaeIII GGCC 1 cut(s) 414
HapII CCGG 5 cut(s) 80, 328, 377, 398, 415
HhaI GCGC 2 cut(s) 368, 403
Hin6I GCGC 2 cut(s) 366, 401
HinP1I GCGC 2 cut(s) 366, 401
HincII GTYRAC 2 cut(s) 104, 288
HindII GTYRAC 2 cut(s) 104, 288
HinfI GANTC 2 cut(s) 92, 360
HpaII CCGG 5 cut(s) 80, 328, 377, 398, 415
HphI GGTGA 4 cut(s) 32, 146, 221, 367
Hpy166II GTNNAC 3 cut(s) 104, 238, 288
Hpy188I TCNGA 3 cut(s) 97, 130, 148
Hpy188III TCNNGA 1 cut(s) 265
Hpy8I GTNNAC 3 cut(s) 104, 238, 288
Hpy99I CGWCG 3 cut(s) 277, 280, 295
HpyAV CCTTC 1 cut(s) 59
HpyCH4IV ACGT 3 cut(s) 167, 234, 290
HpyCH4V TGCA 2 cut(s) 217, 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 204, 398
HpyF3I CTNAG 2 cut(s) 129, 351
HpySE526I ACGT 3 cut(s) 167, 234, 290
HspAI GCGC 2 cut(s) 366, 401
Kzo9I GATC 2 cut(s) 174, 340
LmnI GCTCC 3 cut(s) 16, 61, 82
LpnPI CCDG 7 cut(s) 27, 93, 293, 338, 341, 390, 411
LweI GCATC 1 cut(s) 249
MaeI CTAG 5 cut(s) 8, 44, 185, 389, 410
MaeII ACGT 3 cut(s) 167, 234, 290
MaeIII GTNAC 2 cut(s) 38, 209
MalI GATC 2 cut(s) 176, 342
MboI GATC 2 cut(s) 174, 340
MboII GAAGA 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 1 cut(s) 250
MnlI CCTC 6 cut(s) 124, 130, 181, 330, 384, 405
MspI CCGG 5 cut(s) 80, 328, 377, 398, 415
MspR9I CCNGG 1 cut(s) 378
MwoI GCNNNNNNNGC 2 cut(s) 204, 398
NciI CCSGG 1 cut(s) 378
NdeII GATC 2 cut(s) 174, 340
NheI GCTAGC 1 cut(s) 7
NlaIV GGNNCC 1 cut(s) 78
NmuCI GTSAC 2 cut(s) 38, 209
NspV TTCGAA 1 cut(s) 90
PfeI GAWTC 2 cut(s) 92, 360
PkrI GCNGC 1 cut(s) 206
Psp1406I AACGTT 1 cut(s) 234
PspEI GGTNACC 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 78
PstI CTGCAG 1 cut(s) 340
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
SatI GCNGC 1 cut(s) 205
Sau3AI GATC 2 cut(s) 174, 340
ScrFI CCNGG 1 cut(s) 378
SduI GDGCHC 1 cut(s) 79
SfaNI GCATC 1 cut(s) 249
SfcI CTRYAG 1 cut(s) 336
SfuI TTCGAA 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 1 cut(s) 250
SsiI CCGC 3 cut(s) 119, 204, 207
SspMI CTAG 5 cut(s) 8, 44, 185, 389, 410
StyD4I CCNGG 1 cut(s) 376
StyI CCWWGG 1 cut(s) 409
TaiI ACGT 3 cut(s) 170, 237, 293
TaqI TCGA 3 cut(s) 90, 370, 405
TaqII GACCGA 1 cut(s) 26
TasI AATT 1 cut(s) 250
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 2 cut(s) 92, 360
TscAI CASTG 1 cut(s) 340
TseFI GTSAC 2 cut(s) 38, 209
Tsp45I GTSAC 2 cut(s) 38, 209
TspDTI ATGAA 1 cut(s) 59
TspGWI ACGGA 1 cut(s) 169
TspRI CASTG 1 cut(s) 340
XmaJI CCTAGG 1 cut(s) 409
XspI CTAG 5 cut(s) 8, 44, 185, 389, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.