Rh2AG365000

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0023100
Physical Location & Seq
Forward (+)
54102656 .. 54102979
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG365000.1

Sequence Viewer

Length: 324 bp
ATGCTCGATAACTCATCGTCGTTTGGGCCAACGTCGTTGTCTCCGTTGCTGGCTAATTTGCCTTCGATTTGGGTCCATGGTGAGAATAGACCGCAGGATCAGAAGGTTGGGATACGAGAGCCCGGTCGGCCATCTCTTTTGCCTCGATTCCACTGCAGCCCACCGCAGATCAGTCATCTCCAGCGAGATTCAGGTCCACCACCGAGCCTTTCTAGAGTGGGAATGGTCTTCTGGAGTGCGGGAGACGAACTCGAATCTCGATGCAAAGTCTCGCCTGAAGACGAAGAATACCTTAGGGTTTTAGTTCTGGGTCCACCATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1

Protein Analysis

107

Amino Acids

11.77

Weight (kDa)

5.85

Isoelectric Point (pI)

66.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023100)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003835.1_g000013
rosa_samantha Rh2AG365000 Rh2CG650300 Rh2DG701200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 92, 164, 239
AclWI GGATC 1 cut(s) 105
AcoI YGGCCR 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 297
Alw26I GTCTC 3 cut(s) 45, 237, 274
AlwI GGATC 1 cut(s) 105
AoxI GGCC 2 cut(s) 26, 128
ApeKI GCWGC 1 cut(s) 156
AspS9I GGNCC 4 cut(s) 26, 73, 194, 311
AsuC2I CCSGG 1 cut(s) 123
AsuHPI GGTGA 1 cut(s) 92
AvaII GGWCC 3 cut(s) 73, 194, 311
AxyI CCTNAGG 1 cut(s) 293
BanII GRGCYC 1 cut(s) 123
BbsI GAAGAC 2 cut(s) 220, 285
BbvI GCAGC 1 cut(s) 168
BccI CCATC 1 cut(s) 139
BcgI CGANNNNNNTGC 2 cut(s) 135, 169
BciVI GTATCC 1 cut(s) 105
BcnI CCSGG 1 cut(s) 123
BcoDI GTCTC 3 cut(s) 45, 237, 274
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 154
BfuI GTATCC 1 cut(s) 105
BglI GCCNNNNNGGC 1 cut(s) 127
BisI GCNGC 1 cut(s) 157
BlsI GCNGC 1 cut(s) 158
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 3 cut(s) 73, 194, 311
BmgT120I GGNCC 4 cut(s) 26, 73, 194, 311
BmiI GGNNCC 2 cut(s) 74, 312
BmrFI CCNGG 1 cut(s) 123
BmsI GCATC 1 cut(s) 251
BpiI GAAGAC 2 cut(s) 220, 285
BplI GAGNNNNNCTC 2 cut(s) 234, 266
BpmI CTGGAG 2 cut(s) 164, 253
BpuMI CCSGG 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 76
Bse21I CCTNAGG 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 76
BseXI GCAGC 1 cut(s) 168
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 2 cut(s) 28, 130
BsiEI CGRYCG 1 cut(s) 127
BsiSI CCGG 1 cut(s) 123
BsmAI GTCTC 3 cut(s) 45, 237, 274
BsmBI CGTCTC 1 cut(s) 237
BsnI GGCC 2 cut(s) 28, 130
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 2 cut(s) 97, 168
Bsp19I CCATGG 1 cut(s) 76
BspACI CCGC 3 cut(s) 92, 164, 239
BspANI GGCC 2 cut(s) 28, 130
BspLI GGNNCC 2 cut(s) 74, 312
BspMAI CTGCAG 1 cut(s) 158
BspPI GGATC 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 2 cut(s) 97, 168
BssT1I CCWWGG 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 2 cut(s) 293, 321
BstDSI CCRYGG 1 cut(s) 76
BstKTI GATC 2 cut(s) 100, 171
BstMAI GTCTC 3 cut(s) 45, 237, 274
BstMBI GATC 2 cut(s) 97, 168
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 168
BstV2I GAAGAC 2 cut(s) 220, 285
Bsu36I CCTNAGG 1 cut(s) 293
BsuI GTATCC 1 cut(s) 105
BsuRI GGCC 2 cut(s) 28, 130
BtgI CCRYGG 1 cut(s) 76
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 51
Cfr13I GGNCC 4 cut(s) 26, 73, 194, 311
CviAII CATG 1 cut(s) 77
CviJI RGCY 6 cut(s) 28, 53, 121, 130, 159, 207
CviKI_1 RGCY 6 cut(s) 28, 53, 121, 130, 159, 207
DdeI CTNAG 2 cut(s) 293, 321
DpnI GATC 2 cut(s) 99, 170
DpnII GATC 2 cut(s) 97, 168
EaeI YGGCCR 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 123
Eco47I GGWCC 3 cut(s) 73, 194, 311
Eco57I CTGAAG 1 cut(s) 297
Eco81I CCTNAGG 1 cut(s) 293
EcoT14I CCWWGG 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 237
FaeI CATG 1 cut(s) 80
FaiI YATR 1 cut(s) 78
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FatI CATG 1 cut(s) 76
FauI CCCGC 1 cut(s) 232
Fnu4HI GCNGC 1 cut(s) 157
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 157
FspBI CTAG 1 cut(s) 213
GluI GCNGC 1 cut(s) 157
GsuI CTGGAG 2 cut(s) 164, 253
HaeIII GGCC 2 cut(s) 28, 130
HapII CCGG 1 cut(s) 123
Hin1II CATG 1 cut(s) 80
HinfI GANTC 3 cut(s) 147, 188, 254
HpaII CCGG 1 cut(s) 123
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 2 cut(s) 197, 314
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 3 cut(s) 213, 232, 258
Hpy8I GTNNAC 2 cut(s) 197, 314
Hpy99I CGWCG 2 cut(s) 22, 37
HpyAV CCTTC 2 cut(s) 72, 97
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 2 cut(s) 156, 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
HpyF3I CTNAG 2 cut(s) 293, 321
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 1 cut(s) 80
Kzo9I GATC 2 cut(s) 97, 168
LpnPI CCDG 8 cut(s) 35, 80, 136, 177, 194, 217, 288, 293
Lsp1109I GCAGC 1 cut(s) 168
LweI GCATC 1 cut(s) 251
MaeI CTAG 1 cut(s) 213
MaeII ACGT 1 cut(s) 32
MalI GATC 2 cut(s) 99, 170
MboI GATC 2 cut(s) 97, 168
MboII GAAGA 3 cut(s) 220, 290, 296
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 1 cut(s) 55
MnlI CCTC 1 cut(s) 153
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 127
NciI CCSGG 1 cut(s) 123
NcoI CCATGG 1 cut(s) 76
NdeII GATC 2 cut(s) 97, 168
NlaIII CATG 1 cut(s) 80
NlaIV GGNNCC 2 cut(s) 74, 312
PcsI WCGNNNNNNNCGW 1 cut(s) 41
PfeI GAWTC 3 cut(s) 147, 188, 254
PkrI GCNGC 1 cut(s) 158
PspN4I GGNNCC 2 cut(s) 74, 312
PspPI GGNCC 4 cut(s) 26, 73, 194, 311
PstI CTGCAG 1 cut(s) 158
SatI GCNGC 1 cut(s) 157
Sau3AI GATC 2 cut(s) 97, 168
Sau96I GGNCC 4 cut(s) 26, 73, 194, 311
ScrFI CCNGG 1 cut(s) 123
SduI GDGCHC 1 cut(s) 123
SetI ASST 4 cut(s) 35, 108, 196, 294
SfaNI GCATC 1 cut(s) 251
SfcI CTRYAG 1 cut(s) 154
SinI GGWCC 3 cut(s) 73, 194, 311
Sse9I AATT 1 cut(s) 55
SsiI CCGC 3 cut(s) 92, 164, 239
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 121
StyI CCWWGG 1 cut(s) 76
TaiI ACGT 1 cut(s) 35
TaqI TCGA 5 cut(s) 6, 65, 145, 252, 259
TasI AATT 1 cut(s) 55
TfiI GAWTC 3 cut(s) 147, 188, 254
TscAI CASTG 1 cut(s) 158
TseI GCWGC 1 cut(s) 156
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 1 cut(s) 158
VpaK11BI GGWCC 3 cut(s) 73, 194, 311
XbaI TCTAGA 1 cut(s) 212
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.