Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004096.1

Orthogroup ID

OG0022382

Physical Location & Seq

Genomic Coordinates Reverse (-)

78865 .. 79517

Gene Structure 653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004096.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atgcttggaaatggggacgttgttgggatcgtctcggagactatgaacaagtgggaaagaagagcgccattgaccccctctcactgtgcacggctgcttcacagtggcagtgacaaaaccggcgtgtctcggatcatcatgcagccatcgacgaagcacatccatcatgatgcattgtatgaagaagttggatgtgaaatttcagaggacctgtcagaatgtggcctcattttggggatcaaacaacccaagccggagatgattcttccggatagagcttatgcttttttctcacatacccacaagacgccgaaagaaaatatgccattgttggataagattctagcagaaagggtgtctttgtatgattatgagctaattgttggggatcatatatgggaggagactgcttgcattcggcaagtttgctggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004753 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006520 GO:0006553 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009987 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0019752 GO:0019878 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00300 ko00310 ko01100 ko01110 ko01130 ko01230 map00300 map00310 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

AlaDh_PNT_N Saccharop_dh_N Sacchrp_dh_C Sacchrp_dh_NADP

Protein Analysis

144

Amino Acids

16.34

Weight (kDa)

5.71

Isoelectric Point (pI)

54.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022382)

Species	Orthologous Gene IDs
malus_domestica	MD02G1105200.v1.1
rosa_multiflora	Rmu_sc0004096.1_g000017 Rmu_sc0008498.1_g000001
rosa_samantha	Rh2AG104900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	268
AclWI	GGATC	4 cut(s)	35, 140, 245, 396
AcsI	RAATTY	1 cut(s)	198
AcyI	GRCGYC	1 cut(s)	308
AfiI	CCNNNNNNNGG	1 cut(s)	232
AluBI	AGCT	2 cut(s)	278, 376
AluI	AGCT	2 cut(s)	278, 376
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	4 cut(s)	32, 37, 132, 398
Alw44I	GTGCAC	1 cut(s)	87
AlwI	GGATC	4 cut(s)	35, 140, 245, 396
Aor13HI	TCCGGA	1 cut(s)	268
AoxI	GGCC	1 cut(s)	223
ApaLI	GTGCAC	1 cut(s)	87
ApeKI	GCWGC	2 cut(s)	94, 142
ApoI	RAATTY	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	208
BaeGI	GKGCMC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	2 cut(s)	81, 154
BccI	CCATC	2 cut(s)	154, 171
BceAI	ACGGC	1 cut(s)	107
BcoDI	GTCTC	4 cut(s)	32, 37, 132, 398
BfaI	CTAG	1 cut(s)	344
BfoI	RGCGCY	1 cut(s)	68
BisI	GCNGC	2 cut(s)	95, 143
BlsI	GCNGC	2 cut(s)	96, 144
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	208
BmsI	GCATC	1 cut(s)	160
BsaHI	GRCGYC	1 cut(s)	308
BsaWI	WCCGGW	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse118I	RCCGGY	1 cut(s)	119
BseAI	TCCGGA	1 cut(s)	268
BseGI	GGATG	2 cut(s)	159, 197
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseRI	GAGGAG	1 cut(s)	416
BseSI	GKGCMC	1 cut(s)	91
BseXI	GCAGC	2 cut(s)	81, 154
BshFI	GGCC	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	91
BsiSI	CCGG	3 cut(s)	120, 254, 269
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	4 cut(s)	32, 37, 132, 398
BsmBI	CGTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	29
BsmI	GAATGC	1 cut(s)	414
BsnI	GGCC	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp13I	TCCGGA	1 cut(s)	268
Bsp143I	GATC	4 cut(s)	27, 132, 237, 388
BspANI	GGCC	1 cut(s)	225
BspEI	TCCGGA	1 cut(s)	268
BspHI	TCATGA	1 cut(s)	166
BspPI	GGATC	4 cut(s)	35, 140, 245, 396
BspQI	GCTCTTC	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	119
BssMI	GATC	4 cut(s)	27, 132, 237, 388
BssNI	GRCGYC	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	86, 104
Bst6I	CTCTTC	1 cut(s)	55
BstACI	GRCGYC	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	412
BstF5I	GGATG	2 cut(s)	159, 197
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	4 cut(s)	30, 135, 240, 391
BstMAI	GTCTC	4 cut(s)	32, 37, 132, 398
BstMBI	GATC	4 cut(s)	27, 132, 237, 388
BstSLI	GKGCMC	1 cut(s)	91
BstV1I	GCAGC	2 cut(s)	81, 154
BsuRI	GGCC	1 cut(s)	225
BtsCI	GGATG	2 cut(s)	159, 197
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	3 cut(s)	82, 109, 115
Cac8I	GCNNGC	1 cut(s)	412
CciI	TCATGA	1 cut(s)	166
CfoI	GCGC	1 cut(s)	67
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	208
CseI	GACGC	1 cut(s)	316
CviAII	CATG	2 cut(s)	139, 167
CviJI	RGCY	6 cut(s)	94, 145, 225, 253, 278, 376
CviKI_1	RGCY	6 cut(s)	94, 145, 225, 253, 278, 376
DpnI	GATC	4 cut(s)	29, 134, 239, 390
DpnII	GATC	4 cut(s)	27, 132, 237, 388
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	208
EcoT22I	ATGCAT	1 cut(s)	175
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	2 cut(s)	142, 170
FalI	AAGNNNNNCTT	2 cut(s)	343, 375
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	2 cut(s)	138, 166
Fnu4HI	GCNGC	2 cut(s)	95, 143
FokI	GGATG	2 cut(s)	146, 204
Fsp4HI	GCNGC	2 cut(s)	95, 143
FspBI	CTAG	1 cut(s)	344
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	2 cut(s)	95, 143
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	3 cut(s)	120, 254, 269
HgaI	GACGC	1 cut(s)	316
HhaI	GCGC	1 cut(s)	67
Hin1I	GRCGYC	1 cut(s)	308
Hin1II	CATG	2 cut(s)	142, 170
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HinfI	GANTC	2 cut(s)	262, 340
HpaII	CCGG	3 cut(s)	120, 254, 269
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	4 cut(s)	37, 132, 205, 217
Hpy188III	TCNNGA	2 cut(s)	167, 269
Hpy8I	GTNNAC	1 cut(s)	89
Hpy99I	CGWCG	1 cut(s)	154
HpyCH4III	ACNGT	2 cut(s)	86, 104
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	4 cut(s)	89, 142, 173, 414
HpySE526I	ACGT	1 cut(s)	18
Hsp92I	GRCGYC	1 cut(s)	308
Hsp92II	CATG	2 cut(s)	142, 170
HspAI	GCGC	1 cut(s)	65
Kpn2I	TCCGGA	1 cut(s)	268
Kzo9I	GATC	4 cut(s)	27, 132, 237, 388
LguI	GCTCTTC	1 cut(s)	55
LpnPI	CCDG	5 cut(s)	133, 224, 267, 282, 415
Lsp1109I	GCAGC	2 cut(s)	81, 154
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	344
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	4 cut(s)	29, 134, 239, 390
MboI	GATC	4 cut(s)	27, 132, 237, 388
MboII	GAAGA	3 cut(s)	72, 194, 257
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	2 cut(s)	198, 378
MmeI	TCCRAC	2 cut(s)	169, 312
MnlI	CCTC	4 cut(s)	88, 199, 236, 394
Mph1103I	ATGCAT	1 cut(s)	175
MroI	TCCGGA	1 cut(s)	268
MslI	CAYNNNNRTG	1 cut(s)	168
MspI	CCGG	3 cut(s)	120, 254, 269
Mva1269I	GAATGC	1 cut(s)	414
NdeII	GATC	4 cut(s)	27, 132, 237, 388
NlaIII	CATG	2 cut(s)	142, 170
NmuCI	GTSAC	1 cut(s)	110
NsiI	ATGCAT	1 cut(s)	175
PagI	TCATGA	1 cut(s)	166
PciSI	GCTCTTC	1 cut(s)	55
PctI	GAATGC	1 cut(s)	414
PfeI	GAWTC	2 cut(s)	262, 340
PkrI	GCNGC	2 cut(s)	96, 144
PpuMI	RGGWCCY	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	208
PspPI	GGNCC	1 cut(s)	208
PspPPI	RGGWCCY	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	168
SapI	GCTCTTC	1 cut(s)	55
SatI	GCNGC	2 cut(s)	95, 143
Sau3AI	GATC	4 cut(s)	27, 132, 237, 388
Sau96I	GGNCC	1 cut(s)	208
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	4 cut(s)	21, 213, 280, 378
SfaNI	GCATC	1 cut(s)	160
SinI	GGWCC	1 cut(s)	208
SmiMI	CAYNNNNRTG	1 cut(s)	168
Sse9I	AATT	2 cut(s)	198, 378
SspMI	CTAG	1 cut(s)	344
TaaI	ACNGT	2 cut(s)	86, 104
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	1 cut(s)	149
TasI	AATT	2 cut(s)	198, 378
TfiI	GAWTC	2 cut(s)	262, 340
TscAI	CASTG	3 cut(s)	89, 109, 115
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	2 cut(s)	94, 142
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	2 cut(s)	59, 195
TspRI	CASTG	3 cut(s)	89, 109, 115
VneI	GTGCAC	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	208
XapI	RAATTY	1 cut(s)	198
XspI	CTAG	1 cut(s)	344
Zsp2I	ATGCAT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.