Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0022382

Physical Location & Seq

Genomic Coordinates Forward (+)

9184856 .. 9185666

Gene Structure 811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG104900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGCAACAGGACCTGTCAGAATGTGGCCTCATTTTGGGGATCAAACAACCCAAGCCGGAGATGATTCTTCCGGATAGAGCTTATGCTTTTTTCTCACATACCCACAAGACGCCGAAAGAAAATATGCCATTGTTGGATAAGATTCTAGCAGAAAGGGTGTCTTTGTATGATTATGAGCTAATTGTTGGGGATCATATATGGGAGGAGACTGCTTGCATTCGGCAAGTTTGCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004753 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006520 GO:0006553 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009987 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0019752 GO:0019878 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00300 ko00310 ko01100 ko01110 ko01130 ko01230 map00300 map00310 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

AlaDh_PNT_N Saccharop_dh_N Sacchrp_dh_C Sacchrp_dh_NADP

Protein Analysis

78

Amino Acids

9.12

Weight (kDa)

5.19

Isoelectric Point (pI)

62.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AlaDh_PNT_N	PF05222	3 - 63	8.1e-06	Alanine dehydrogenase/PNT, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0022382)

Species	Orthologous Gene IDs
malus_domestica	MD02G1105200.v1.1
rosa_multiflora	Rmu_sc0004096.1_g000017 Rmu_sc0008498.1_g000001
rosa_samantha	Rh2AG104900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	70
AclWI	GGATC	2 cut(s)	47, 198
AcyI	GRCGYC	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	34
AluBI	AGCT	2 cut(s)	80, 178
AluI	AGCT	2 cut(s)	80, 178
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	2 cut(s)	47, 198
AlwNI	CAGNNNCTG	1 cut(s)	13
Aor13HI	TCCGGA	1 cut(s)	70
AoxI	GGCC	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	10
BsaHI	GRCGYC	1 cut(s)	110
BsaWI	WCCGGW	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
BseAI	TCCGGA	1 cut(s)	70
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseRI	GAGGAG	1 cut(s)	218
BshFI	GGCC	1 cut(s)	27
BsiSI	CCGG	2 cut(s)	56, 71
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	200
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	27
Bsp13I	TCCGGA	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	39, 190
BspANI	GGCC	1 cut(s)	27
BspEI	TCCGGA	1 cut(s)	70
BspPI	GGATC	2 cut(s)	47, 198
BssMI	GATC	2 cut(s)	39, 190
BssNI	GRCGYC	1 cut(s)	110
BstACI	GRCGYC	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	214
BstKTI	GATC	2 cut(s)	42, 193
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	2 cut(s)	39, 190
BsuRI	GGCC	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	214
CaiI	CAGNNNCTG	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	10
CseI	GACGC	1 cut(s)	118
CviJI	RGCY	4 cut(s)	27, 55, 80, 178
CviKI_1	RGCY	4 cut(s)	27, 55, 80, 178
DpnI	GATC	2 cut(s)	41, 192
DpnII	GATC	2 cut(s)	39, 190
Eco47I	GGWCC	1 cut(s)	10
EcoO109I	RGGNCCY	1 cut(s)	10
FaiI	YATR	8 cut(s)	84, 99, 125, 168, 174, 195, 197, 199
FalI	AAGNNNNNCTT	2 cut(s)	145, 177
FspBI	CTAG	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	2 cut(s)	56, 71
HgaI	GACGC	1 cut(s)	118
Hin1I	GRCGYC	1 cut(s)	110
HinfI	GANTC	2 cut(s)	64, 142
HpaII	CCGG	2 cut(s)	56, 71
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	1 cut(s)	71
HpyCH4V	TGCA	2 cut(s)	4, 216
Hsp92I	GRCGYC	1 cut(s)	110
Kpn2I	TCCGGA	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	39, 190
LpnPI	CCDG	4 cut(s)	26, 69, 84, 217
MaeI	CTAG	1 cut(s)	146
MalI	GATC	2 cut(s)	41, 192
MboI	GATC	2 cut(s)	39, 190
MboII	GAAGA	1 cut(s)	59
MluCI	AATT	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	2 cut(s)	38, 196
MroI	TCCGGA	1 cut(s)	70
MspI	CCGG	2 cut(s)	56, 71
Mva1269I	GAATGC	1 cut(s)	216
NdeII	GATC	2 cut(s)	39, 190
PctI	GAATGC	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	64, 142
PpuMI	RGGWCCY	1 cut(s)	10
Psp5II	RGGWCCY	1 cut(s)	10
PspPI	GGNCC	1 cut(s)	10
PspPPI	RGGWCCY	1 cut(s)	10
PstNI	CAGNNNCTG	1 cut(s)	13
Sau3AI	GATC	2 cut(s)	39, 190
Sau96I	GGNCC	1 cut(s)	10
SetI	ASST	3 cut(s)	15, 82, 180
SgeI	CNNG	8 cut(s)	20, 25, 64, 68, 83, 118, 158, 225
SinI	GGWCC	1 cut(s)	10
Sse9I	AATT	1 cut(s)	180
SspMI	CTAG	1 cut(s)	146
TasI	AATT	1 cut(s)	180
TfiI	GAWTC	2 cut(s)	64, 142
VpaK11BI	GGWCC	1 cut(s)	10
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.