Rmu_sc0004112.1_g000019

traB domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004112.1
OG0021664
Physical Location & Seq
Reverse (-)
76832 .. 77878
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 432 bp
atggacccagaatcatcgaccgtgcccgacccgaattcggccgaggatttagtccacgtcgagaattccctgtcggatagcttgtctgatagcatcgtcaatgtggaggtgcctagagaggaggaggaggaggatctgtccctgagcttggtggtgctgacgtgtgagtcctccgccgagagcggcgtttgtgacgggcacctcgtcggaacggcgcatgtttcagtggaatcatgcaaagaggttgaagcagtaataagttttttgaaaccagaggtgcttattgagttggtttcattaaaaatccggaatccggcggccggtgatcggaatccagcgaccggtgaccggaatcgggataaagttggccggattccggcaaccggtgaccgggaggcaatagacgtctattggggggcaatacatggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TraB

Protein Analysis

143

Amino Acids

15.29

Weight (kDa)

4.32

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021664)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004112.1_g000019
rosa_rugosa Rorug04G0146200
rosa_samantha Rh4AG081500 Rh4BG031000 Rh4CG089000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 166
AatII GACGTC 1 cut(s) 408
AccB1I GGYRCC 2 cut(s) 109, 198
AccBSI CCGCTC 1 cut(s) 183
AccIII TCCGGA 1 cut(s) 306
AciI CCGC 3 cut(s) 174, 183, 317
AclWI GGATC 1 cut(s) 141
AcoI YGGCCR 3 cut(s) 39, 318, 367
AcsI RAATTY 2 cut(s) 34, 64
AcyI GRCGYC 1 cut(s) 405
AflIII ACRYGT 1 cut(s) 161
AgeI ACCGGT 2 cut(s) 341, 383
AgsI TTSAA 2 cut(s) 248, 268
AjiI CACGTC 2 cut(s) 58, 162
AluBI AGCT 2 cut(s) 81, 147
AluI AGCT 2 cut(s) 81, 147
AlwI GGATC 1 cut(s) 141
Aor13HI TCCGGA 1 cut(s) 306
AoxI GGCC 3 cut(s) 39, 318, 367
ApoI RAATTY 2 cut(s) 34, 64
AsiGI ACCGGT 2 cut(s) 341, 383
AspLEI GCGC 1 cut(s) 217
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 392
AsuHPI GGTGA 3 cut(s) 335, 356, 398
AvaII GGWCC 1 cut(s) 4
BaeGI GKGCMC 2 cut(s) 27, 201
BanI GGYRCC 2 cut(s) 109, 198
BceAI ACGGC 1 cut(s) 228
BcnI CCSGG 1 cut(s) 392
BfaI CTAG 1 cut(s) 114
BisI GCNGC 2 cut(s) 184, 318
BlsI GCNGC 2 cut(s) 185, 319
Bme1390I CCNGG 1 cut(s) 392
Bme18I GGWCC 1 cut(s) 4
BmgBI CACGTC 2 cut(s) 58, 162
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 3 cut(s) 6, 111, 200
BmrFI CCNGG 1 cut(s) 392
BmsI GCATC 1 cut(s) 102
Bpu10I CCTNAGC 1 cut(s) 143
BpuMI CCSGG 1 cut(s) 392
BsaBI GATNNNNATC 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 405
BsaJI CCNNGG 1 cut(s) 42
BsaWI WCCGGW 4 cut(s) 306, 341, 348, 383
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bse118I RCCGGY 3 cut(s) 320, 341, 383
Bse8I GATNNNNATC 1 cut(s) 330
BseAI TCCGGA 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 42
BseJI GATNNNNATC 1 cut(s) 330
BseMII CTCAG 1 cut(s) 134
BseRI GAGGAG 4 cut(s) 134, 137, 140, 143
BseSI GKGCMC 2 cut(s) 27, 201
BseX3I CGGCCG 2 cut(s) 39, 318
Bsh1285I CGRYCG 4 cut(s) 21, 42, 321, 342
BshFI GGCC 3 cut(s) 41, 320, 369
BshNI GGYRCC 2 cut(s) 109, 198
BshTI ACCGGT 2 cut(s) 341, 383
BsiEI CGRYCG 4 cut(s) 21, 42, 321, 342
BsiSI CCGG 9 cut(s) 307, 314, 321, 342, 349, 370, 377, 384, 391
BslFI GGGAC 1 cut(s) 124
BsmFI GGGAC 1 cut(s) 124
BsnI GGCC 3 cut(s) 41, 320, 369
Bsp1286I GDGCHC 2 cut(s) 27, 201
Bsp13I TCCGGA 1 cut(s) 306
Bsp143I GATC 2 cut(s) 133, 325
BspACI CCGC 3 cut(s) 174, 183, 317
BspANI GGCC 3 cut(s) 41, 320, 369
BspCNI CTCAG 1 cut(s) 135
BspEI TCCGGA 1 cut(s) 306
BspLI GGNNCC 3 cut(s) 6, 111, 200
BspPI GGATC 1 cut(s) 141
BspT107I GGYRCC 2 cut(s) 109, 198
BsrBI CCGCTC 1 cut(s) 183
BsrFI RCCGGY 3 cut(s) 320, 341, 383
BssAI RCCGGY 3 cut(s) 320, 341, 383
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 2 cut(s) 133, 325
BssNI GRCGYC 1 cut(s) 405
Bst4CI ACNGT 1 cut(s) 22
BstACI GRCGYC 1 cut(s) 405
BstDEI CTNAG 1 cut(s) 143
BstEII GGTNACC 2 cut(s) 344, 386
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 2 cut(s) 136, 328
BstMBI GATC 2 cut(s) 133, 325
BstMCI CGRYCG 4 cut(s) 21, 42, 321, 342
BstNSI RCATGY 1 cut(s) 221
BstPI GGTNACC 2 cut(s) 344, 386
BstSCI CCNGG 1 cut(s) 390
BstSLI GKGCMC 2 cut(s) 27, 201
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BstZI CGGCCG 2 cut(s) 39, 318
BsuRI GGCC 3 cut(s) 41, 320, 369
BtrI CACGTC 2 cut(s) 58, 162
BtsIMutI CAGTG 1 cut(s) 231
CfoI GCGC 1 cut(s) 217
Cfr10I RCCGGY 3 cut(s) 320, 341, 383
Cfr13I GGNCC 1 cut(s) 4
CspAI ACCGGT 2 cut(s) 341, 383
CviAII CATG 3 cut(s) 218, 234, 425
CviJI RGCY 6 cut(s) 41, 81, 147, 320, 369, 429
CviKI_1 RGCY 6 cut(s) 41, 81, 147, 320, 369, 429
DdeI CTNAG 1 cut(s) 143
DpnI GATC 2 cut(s) 135, 327
DpnII GATC 2 cut(s) 133, 325
DrdI GACNNNNNNGTC 1 cut(s) 166
DseDI GACNNNNNNGTC 1 cut(s) 166
EaeI YGGCCR 3 cut(s) 39, 318, 367
EagI CGGCCG 2 cut(s) 39, 318
EciI GGCGGA 1 cut(s) 163
EclXI CGGCCG 2 cut(s) 39, 318
Eco47I GGWCC 1 cut(s) 4
Eco52I CGGCCG 2 cut(s) 39, 318
Eco91I GGTNACC 2 cut(s) 344, 386
EcoO65I GGTNACC 2 cut(s) 344, 386
EcoRI GAATTC 2 cut(s) 34, 64
FaeI CATG 3 cut(s) 221, 237, 428
FaiI YATR 3 cut(s) 219, 235, 426
FaqI GGGAC 1 cut(s) 124
FatI CATG 3 cut(s) 217, 233, 424
Fnu4HI GCNGC 2 cut(s) 184, 318
Fsp4HI GCNGC 2 cut(s) 184, 318
FspBI CTAG 1 cut(s) 114
GlaI GCGC 1 cut(s) 216
GluI GCNGC 2 cut(s) 184, 318
HaeIII GGCC 3 cut(s) 41, 320, 369
HapII CCGG 9 cut(s) 307, 314, 321, 342, 349, 370, 377, 384, 391
HhaI GCGC 1 cut(s) 217
Hin1I GRCGYC 1 cut(s) 405
Hin1II CATG 3 cut(s) 221, 237, 428
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HinfI GANTC 7 cut(s) 11, 167, 230, 310, 331, 352, 373
HpaII CCGG 9 cut(s) 307, 314, 321, 342, 349, 370, 377, 384, 391
HphI GGTGA 3 cut(s) 335, 356, 398
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 4 cut(s) 76, 88, 209, 330
Hpy188III TCNNGA 3 cut(s) 61, 307, 356
Hpy8I GTNNAC 1 cut(s) 55
Hpy99I CGWCG 2 cut(s) 62, 209
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 3 cut(s) 57, 161, 405
HpyCH4V TGCA 1 cut(s) 237
HpyF3I CTNAG 1 cut(s) 143
HpySE526I ACGT 3 cut(s) 57, 161, 405
Hsp92I GRCGYC 1 cut(s) 405
Hsp92II CATG 3 cut(s) 221, 237, 428
HspAI GCGC 1 cut(s) 215
Kpn2I TCCGGA 1 cut(s) 306
Kzo9I GATC 2 cut(s) 133, 325
LweI GCATC 1 cut(s) 102
MaeI CTAG 1 cut(s) 114
MaeII ACGT 3 cut(s) 57, 161, 405
MaeIII GTNAC 3 cut(s) 191, 344, 386
MalI GATC 2 cut(s) 135, 327
MbiI CCGCTC 1 cut(s) 183
MboI GATC 2 cut(s) 133, 325
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 2 cut(s) 27, 201
MluCI AATT 2 cut(s) 34, 64
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 2 cut(s) 54, 187
MroI TCCGGA 1 cut(s) 306
MseI TTAA 1 cut(s) 299
MspI CCGG 9 cut(s) 307, 314, 321, 342, 349, 370, 377, 384, 391
MspR9I CCNGG 1 cut(s) 392
NciI CCSGG 1 cut(s) 392
NdeII GATC 2 cut(s) 133, 325
NlaIII CATG 3 cut(s) 221, 237, 428
NlaIV GGNNCC 3 cut(s) 6, 111, 200
NmeAIII GCCGAG 2 cut(s) 67, 202
NmuCI GTSAC 3 cut(s) 191, 344, 386
NspI RCATGY 1 cut(s) 221
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PfeI GAWTC 6 cut(s) 11, 230, 310, 331, 352, 373
PinAI ACCGGT 2 cut(s) 341, 383
PkrI GCNGC 2 cut(s) 185, 319
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PspEI GGTNACC 2 cut(s) 344, 386
PspN4I GGNNCC 3 cut(s) 6, 111, 200
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 133
SaqAI TTAA 1 cut(s) 299
SatI GCNGC 2 cut(s) 184, 318
Sau3AI GATC 2 cut(s) 133, 325
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 392
SduI GDGCHC 2 cut(s) 27, 201
SetI ASST 9 cut(s) 60, 83, 111, 149, 164, 204, 246, 279, 408
SfaNI GCATC 1 cut(s) 102
SinI GGWCC 1 cut(s) 4
Sse9I AATT 2 cut(s) 34, 64
SsiI CCGC 3 cut(s) 174, 183, 317
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 390
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 3 cut(s) 60, 164, 408
TaqI TCGA 2 cut(s) 17, 60
TasI AATT 2 cut(s) 34, 64
TauI GCSGC 2 cut(s) 186, 320
TfiI GAWTC 6 cut(s) 11, 230, 310, 331, 352, 373
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
TscAI CASTG 1 cut(s) 231
TseFI GTSAC 3 cut(s) 191, 344, 386
Tsp45I GTSAC 3 cut(s) 191, 344, 386
TspDTI ATGAA 1 cut(s) 285
TspRI CASTG 1 cut(s) 231
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 2 cut(s) 34, 64
XceI RCATGY 1 cut(s) 221
XspI CTAG 1 cut(s) 114
ZraI GACGTC 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.