Rh4AG081500

traB domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0021664
Physical Location & Seq
Forward (+)
17039670 .. 17060972
21303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG081500.1

Sequence Viewer

Length: 321 bp
ATGGACCCGGAATCATCGACCCTGCCCGACCCAAATTCGGCTGAGGATTTAGTCCACGTTGAGAATTCCCTGTCTGATAGCATCGTCAATGTGGAGGTGCCTAGAAAGGAGGAGGAGGAGGACGGCGACGTCGTTTCGACTAGAGCTGCCGCGGAGGAGGAGGAGGATCTATCCCGGAGCTTGGTGGTGCTGACGTGTGAGTCCTCCGCCGAGAGCGGCCTTTGTGACATGCACCTCGTCGGAAAGGCGCATGTTTCGGTGCAAATCATGCATGAAGAGTATGCATCAAATAGTGAATATACGAATGTGTCATGTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TraB

Protein Analysis

106

Amino Acids

11.48

Weight (kDa)

4.08

Isoelectric Point (pI)

71.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021664)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004112.1_g000019
rosa_rugosa Rorug04G0146200
rosa_samantha Rh4AG081500 Rh4BG031000 Rh4CG089000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 128, 199
AatII GACGTC 1 cut(s) 132
AccB1I GGYRCC 1 cut(s) 97
AccBSI CCGCTC 1 cut(s) 216
AccII CGCG 1 cut(s) 152
AciI CCGC 4 cut(s) 150, 152, 207, 216
AclWI GGATC 1 cut(s) 174
AcsI RAATTY 2 cut(s) 34, 64
AcyI GRCGYC 1 cut(s) 129
AfiI CCNNNNNNNGG 2 cut(s) 37, 181
AflIII ACRYGT 1 cut(s) 194
AjiI CACGTC 1 cut(s) 195
AluBI AGCT 2 cut(s) 146, 180
AluI AGCT 2 cut(s) 146, 180
AlwI GGATC 1 cut(s) 174
AoxI GGCC 1 cut(s) 217
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 2 cut(s) 34, 64
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 2 cut(s) 8, 175
AvaII GGWCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 97
BbvCI CCTCAGC 1 cut(s) 42
BbvI GCAGC 1 cut(s) 133
BceAI ACGGC 1 cut(s) 139
BcnI CCSGG 2 cut(s) 8, 175
BfaI CTAG 3 cut(s) 102, 141, 319
BisI GCNGC 3 cut(s) 147, 150, 217
BlsI GCNGC 3 cut(s) 148, 151, 218
Bme1390I CCNGG 2 cut(s) 8, 175
Bme18I GGWCC 1 cut(s) 4
BmgBI CACGTC 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 6, 99
BmrFI CCNGG 2 cut(s) 8, 175
BmsI GCATC 2 cut(s) 90, 293
Bpu10I CCTNAGC 1 cut(s) 42
BpuMI CCSGG 2 cut(s) 8, 175
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 150
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 181
BseDI CCNNGG 1 cut(s) 150
BseLI CCNNNNNNNGG 2 cut(s) 37, 181
BseMII CTCAG 1 cut(s) 33
BseRI GAGGAG 6 cut(s) 125, 128, 131, 170, 173, 176
BseXI GCAGC 1 cut(s) 133
Bsh1236I CGCG 1 cut(s) 152
BshFI GGCC 1 cut(s) 219
BshNI GGYRCC 1 cut(s) 97
BsiSI CCGG 2 cut(s) 8, 175
BslI CCNNNNNNNGG 2 cut(s) 37, 181
BsnI GGCC 1 cut(s) 219
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 4 cut(s) 150, 152, 207, 216
BspANI GGCC 1 cut(s) 219
BspCNI CTCAG 1 cut(s) 34
BspFNI CGCG 1 cut(s) 152
BspLI GGNNCC 2 cut(s) 6, 99
BspPI GGATC 1 cut(s) 174
BspT107I GGYRCC 1 cut(s) 97
BsrBI CCGCTC 1 cut(s) 216
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 1 cut(s) 166
BssNI GRCGYC 1 cut(s) 129
Bst6I CTCTTC 1 cut(s) 270
BstACI GRCGYC 1 cut(s) 129
BstAPI GCANNNNNTGC 1 cut(s) 268
BstDEI CTNAG 1 cut(s) 42
BstDSI CCRYGG 1 cut(s) 150
BstFNI CGCG 1 cut(s) 152
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 268
BstNSI RCATGY 2 cut(s) 232, 254
BstSCI CCNGG 2 cut(s) 6, 173
BstUI CGCG 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 133
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BsuRI GGCC 1 cut(s) 219
BtgI CCRYGG 1 cut(s) 150
BtrI CACGTC 1 cut(s) 195
CfoI GCGC 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 4
Cfr42I CCGCGG 1 cut(s) 153
CviAII CATG 5 cut(s) 229, 251, 268, 272, 312
CviJI RGCY 4 cut(s) 41, 146, 180, 219
CviKI_1 RGCY 4 cut(s) 41, 146, 180, 219
DdeI CTNAG 1 cut(s) 42
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
DrdI GACNNNNNNGTC 2 cut(s) 128, 199
DseDI GACNNNNNNGTC 2 cut(s) 128, 199
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
EciI GGCGGA 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 4
EcoRI GAATTC 1 cut(s) 64
EcoT22I ATGCAT 2 cut(s) 273, 286
FaeI CATG 5 cut(s) 232, 254, 271, 275, 315
FaiI YATR 7 cut(s) 230, 252, 269, 273, 282, 300, 313
FatI CATG 5 cut(s) 228, 250, 267, 271, 311
Fnu4HI GCNGC 3 cut(s) 147, 150, 217
Fsp4HI GCNGC 3 cut(s) 147, 150, 217
FspBI CTAG 3 cut(s) 102, 141, 319
GlaI GCGC 1 cut(s) 249
GluI GCNGC 3 cut(s) 147, 150, 217
HaeIII GGCC 1 cut(s) 219
HapII CCGG 2 cut(s) 8, 175
HhaI GCGC 1 cut(s) 250
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 5 cut(s) 232, 254, 271, 275, 315
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HinfI GANTC 2 cut(s) 11, 200
HpaII CCGG 2 cut(s) 8, 175
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 2 cut(s) 76, 242
Hpy8I GTNNAC 1 cut(s) 55
Hpy99I CGWCG 3 cut(s) 131, 134, 242
HpyCH4IV ACGT 3 cut(s) 57, 129, 194
HpyCH4V TGCA 4 cut(s) 232, 262, 271, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 268
HpyF3I CTNAG 1 cut(s) 42
HpySE526I ACGT 3 cut(s) 57, 129, 194
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 5 cut(s) 232, 254, 271, 275, 315
HspAI GCGC 1 cut(s) 248
KspI CCGCGG 1 cut(s) 153
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 1 cut(s) 177
LpnPI CCDG 4 cut(s) 21, 35, 83, 188
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 2 cut(s) 90, 293
MaeI CTAG 3 cut(s) 102, 141, 319
MaeII ACGT 3 cut(s) 57, 129, 194
MaeIII GTNAC 1 cut(s) 224
MalI GATC 1 cut(s) 168
MbiI CCGCTC 1 cut(s) 216
MboI GATC 1 cut(s) 166
MboII GAAGA 1 cut(s) 287
MflI RGATCY 1 cut(s) 166
MluCI AATT 2 cut(s) 34, 64
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 220
Mph1103I ATGCAT 2 cut(s) 273, 286
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 2 cut(s) 8, 175
MspR9I CCNGG 2 cut(s) 8, 175
MvnI CGCG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 268
NciI CCSGG 2 cut(s) 8, 175
NdeII GATC 1 cut(s) 166
NlaIII CATG 5 cut(s) 232, 254, 271, 275, 315
NlaIV GGNNCC 2 cut(s) 6, 99
NmeAIII GCCGAG 1 cut(s) 235
NmuCI GTSAC 1 cut(s) 224
NsiI ATGCAT 2 cut(s) 273, 286
NspI RCATGY 2 cut(s) 232, 254
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PfeI GAWTC 1 cut(s) 11
PfoI TCCNGGA 1 cut(s) 173
PkrI GCNGC 3 cut(s) 148, 151, 218
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PspN4I GGNNCC 2 cut(s) 6, 99
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 166
SacII CCGCGG 1 cut(s) 153
SatI GCNGC 3 cut(s) 147, 150, 217
Sau3AI GATC 1 cut(s) 166
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 2 cut(s) 8, 175
SetI ASST 7 cut(s) 60, 99, 132, 148, 182, 197, 237
SfaNI GCATC 2 cut(s) 90, 293
Sfr303I CCGCGG 1 cut(s) 153
SgrBI CCGCGG 1 cut(s) 153
SinI GGWCC 1 cut(s) 4
Sse9I AATT 2 cut(s) 34, 64
SsiI CCGC 4 cut(s) 150, 152, 207, 216
SspMI CTAG 3 cut(s) 102, 141, 319
StyD4I CCNGG 2 cut(s) 6, 173
TaiI ACGT 3 cut(s) 60, 132, 197
TaqI TCGA 2 cut(s) 17, 137
TasI AATT 2 cut(s) 34, 64
TauI GCSGC 2 cut(s) 152, 219
TfiI GAWTC 1 cut(s) 11
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 288
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 2 cut(s) 34, 64
XceI RCATGY 2 cut(s) 232, 254
XspI CTAG 3 cut(s) 102, 141, 319
ZraI GACGTC 1 cut(s) 130
Zsp2I ATGCAT 2 cut(s) 273, 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.