Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002958

Physical Location & Seq

Genomic Coordinates Reverse (-)

24145458 .. 24151358

Gene Structure 5901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0146200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGACTGTTGTCAGACTCTTAGTCATCTAAAAGGTTCTTTGTGCTGTCAGTTATTATTATTCTTTATCTGGTTATCCAGTTTTCAAGATGCTGTGGCATTGGAGACGGTCTTTGAGCAAAGTCATGTTCCTCAAATGCCAGAGCTTGCTAAACCACCTTCTAGTGGAATCTTTGGTCCTATAGAAATATCACCTGCAGTTATTCCACATTATCCAGATCCTGACGAACCCTTTCCGCCGATGTACCCTACATTTCCAACCAGATATGAGCCTGTTTTAACTGGGAAATGTCCTGTCAATTTCTCCGCTATATCGAGTATCATTGAAAAAACAGCATCTGATTGTTCACAACCTTTGGCAGCACTTGTAGGAAATGTAATATGTTGTCCACAGTTCAGTAGTTTGATCCGCATCTTCCAGGGTCTCTACAGCTTCAACTCGGCTAAGTTGGTTTTGCAAGATTCAGTTGCAAGTGATTGTTTTACAGATATAATCAGTATCTTAGCCAGTAGGGGTGCAAACAGTACAATACCTACACTTTGCTCTGTAAAATCTTCAAATCTTACTGGTGGGTCCTGTCCAGTGAAGGATGTTGATACCTTTGAAAAAACAGTAAACACAAGCAGATTACTGGAGGCCTGCATAGCTGTTGATCCTCTTAAAGAGTGCTGCCGACCAATTTGTCAACCTGCAATCATGGATGCTGCGCTTCAGATCTCCGGGAAGCAACTGCAGTTGGATGAGAATAAAAATTTGGTTGGTGAGCCAAATCATATCGACACTCCAAGTGACTGTAAAGGAGTGGTTTTTGCATATCTTTCAAGGAAACTCTCGTCAGATGTTGTAAATACTGCATTTCGAATATTATCTGCCTGCAAAGTTAATAAAGTTTGTCCTTTGGATTTTAAGGAGCCTTCGGAAGTAATTAAAGCATGCCGCAATGTTGCTGCCCCAAGTCCTTCCTGCTGTAGCTCATTAAACACCTACATTGCAGGAATACAGAAGCAAATGTTGATTACAAACAGGCAAGCTATAATCTGTGCTACAGTGTTTGGTTCTATCTTAAGGAAAGGCGGGGTAATGACAAATATTTACGAGCTTTGTGATGTTGACTTAAAAGACTTCAGCATTCAAGCATATGGTCAACAAGGGTGTCTACTTAGAAGCCTGCCTGCAGATGTGATGTTTGACAATTCAACTGGTTTCAGCTTTACGTGTGATTTAAGTGATAATATTGCAGCTCCATGGCCTTCATCATCCTCAATTTCATCAGTGTCCCTCTGTGGGCCTGAGATGTCATTGCCCGCACTACCAACATCGGAGACTTTTAAAAATCTTGGCTGTCGTGGTGGAGGGCAGGAATTTCTTGTAACCATTATTTCATTTTTGGTTTTCGGGACTTTATTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

470

Amino Acids

50.69

Weight (kDa)

5.08

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	94 - 248	1.1e-22	SPARK
At1g61900	PF26584	296 - 369	6.9e-32	At1g61900-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05290 AT5G27520
fragaria_vesca	FvH4_4g14900 FvH4_6g05760
malus_domestica	MD04G1205900.v1.1 MD12G1220000.v1.1 MD13G1186400.v1.1 MD16G1187100.v1.1
prunus_persica	Prupe.1G154100_v2.0.a1 Prupe.1G154100_v2.0.a1 Prupe.6G326700_v2.0.a1
pyrus_communis	pycom04g18220 pycom12g20540 pycom13g16130 pycom16g15710
rosa_chinensis	RchiOBHm_Chr3g0454671 RchiOBHm_Chr4g0417191 RchiOBHm_Chr4g0417301
rosa_laevigata	RLG00000007919 RLG00000025425
rosa_multiflora	Rmu_sc0000646.1_g000002 Rmu_sc0002129.1_g000048
rosa_roxburghii	Rroxscaffold_5G00361050 Rroxscaffold_6G00424870
rosa_rugosa	Rorug03G0001100.1 Rorug04G0146200 Rorug04G0146600
rosa_samantha	Rh3AG061000 Rh3CG061700 Rh3DG062600 Rh4AG209400 Rh4AG210200 Rh4CG220600 Rh4CG221200 Rh4DG207200 Rh4DG208200
rosa_wichuraiana	Rw3G004750 Rw4G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	202
AasI	GACNNNNNNGTC	1 cut(s)	681
Acc36I	ACCTGC	2 cut(s)	202, 697
AccI	GTMKAC	1 cut(s)	1156
AciI	CCGC	6 cut(s)	236, 306, 409, 937, 1074, 1305
AclWI	GGATC	3 cut(s)	212, 400, 647
AcsI	RAATTY	2 cut(s)	751, 1361
AcuI	CTGAAG	2 cut(s)	695, 1108
AfaI	GTAC	3 cut(s)	245, 526, 1409
AfiI	CCNNNNNNNGG	2 cut(s)	164, 1284
AflII	CTTAAG	1 cut(s)	1063
AflIII	ACRYGT	1 cut(s)	1214
AgsI	TTSAA	8 cut(s)	86, 326, 436, 558, 605, 822, 1133, 1197
AhdI	GACNNNNNGTC	1 cut(s)	21
AjnI	CCWGG	1 cut(s)	417
AjuI	GAANNNNNNNTTGG	2 cut(s)	737, 769
AluBI	AGCT	8 cut(s)	145, 432, 647, 972, 1031, 1099, 1209, 1241
AluI	AGCT	8 cut(s)	145, 432, 647, 972, 1031, 1099, 1209, 1241
Alw26I	GTCTC	3 cut(s)	98, 428, 1316
AlwI	GGATC	3 cut(s)	212, 400, 647
AlwNI	CAGNNNCTG	2 cut(s)	221, 338
AoxI	GGCC	3 cut(s)	636, 1247, 1286
ApeKI	GCWGC	5 cut(s)	359, 669, 704, 947, 1238
ApoI	RAATTY	2 cut(s)	751, 1361
Asp700I	GAANNNNTTC	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	709
AspS9I	GGNCC	3 cut(s)	176, 573, 1286
AsuC2I	CCSGG	1 cut(s)	721
AsuHPI	GGTGA	2 cut(s)	183, 773
AsuII	TTCGAA	1 cut(s)	859
AvaII	GGWCC	2 cut(s)	176, 573
BbvI	GCAGC	5 cut(s)	371, 656, 691, 934, 1250
BciT130I	CCWGG	1 cut(s)	419
BcnI	CCSGG	1 cut(s)	721
BcoDI	GTCTC	3 cut(s)	98, 428, 1316
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	7 cut(s)	180, 195, 427, 731, 967, 1044, 1173
BfrI	CTTAAG	1 cut(s)	1063
BfuAI	ACCTGC	2 cut(s)	202, 697
BglII	AGATCT	1 cut(s)	714
BisI	GCNGC	6 cut(s)	360, 670, 705, 937, 948, 1239
BlsI	GCNGC	6 cut(s)	361, 671, 706, 938, 949, 1240
Bme1390I	CCNGG	2 cut(s)	419, 721
Bme18I	GGWCC	2 cut(s)	176, 573
BmeRI	GACNNNNNGTC	1 cut(s)	21
BmgT120I	GGNCC	3 cut(s)	176, 573, 1286
BmiI	GGNNCC	2 cut(s)	574, 912
BmrFI	CCNGG	2 cut(s)	419, 721
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	4 cut(s)	79, 344, 420, 691
BmuI	ACTGGG	1 cut(s)	291
BoxI	GACNNNNGTC	1 cut(s)	9
BpmI	CTGGAG	1 cut(s)	653
Bpu14I	TTCGAA	1 cut(s)	859
BpuMI	CCSGG	1 cut(s)	721
BsaAI	YACGTR	1 cut(s)	1215
BsaBI	GATNNNNATC	1 cut(s)	410
BsaI	GGTCTC	1 cut(s)	428
BsaJI	CCNNGG	2 cut(s)	418, 1244
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 1284
Bse1I	ACTGG	7 cut(s)	78, 286, 507, 571, 581, 636, 1204
Bse3DI	GCAATG	3 cut(s)	946, 987, 1298
Bse8I	GATNNNNATC	1 cut(s)	410
BseBI	CCWGG	1 cut(s)	419
BseDI	CCNNGG	2 cut(s)	418, 1244
BseGI	GGATG	4 cut(s)	595, 706, 745, 1256
BseJI	GATNNNNATC	1 cut(s)	410
BseLI	CCNNNNNNNGG	2 cut(s)	164, 1284
BseMI	GCAATG	3 cut(s)	946, 987, 1298
BseMII	CTCAG	1 cut(s)	1281
BseNI	ACTGG	7 cut(s)	78, 286, 507, 571, 581, 636, 1204
BseXI	GCAGC	5 cut(s)	371, 656, 691, 934, 1250
BshFI	GGCC	3 cut(s)	638, 1249, 1288
BsiSI	CCGG	1 cut(s)	720
BslFI	GGGAC	1 cut(s)	1261
BslI	CCNNNNNNNGG	2 cut(s)	164, 1284
BsmAI	GTCTC	3 cut(s)	98, 428, 1316
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	1261
BsmI	GAATGC	1 cut(s)	1128
BsnI	GGCC	3 cut(s)	638, 1249, 1288
Bso31I	GGTCTC	1 cut(s)	428
Bsp119I	TTCGAA	1 cut(s)	859
Bsp143I	GATC	4 cut(s)	217, 405, 652, 714
Bsp19I	CCATGG	1 cut(s)	1244
BspACI	CCGC	6 cut(s)	236, 306, 409, 937, 1074, 1305
BspANI	GGCC	3 cut(s)	638, 1249, 1288
BspCNI	CTCAG	1 cut(s)	1282
BspLI	GGNNCC	2 cut(s)	574, 912
BspMAI	CTGCAG	3 cut(s)	199, 735, 1177
BspMI	ACCTGC	2 cut(s)	202, 697
BspPI	GGATC	3 cut(s)	212, 400, 647
BspT104I	TTCGAA	1 cut(s)	859
BspTI	CTTAAG	1 cut(s)	1063
BspTNI	GGTCTC	1 cut(s)	428
BsrDI	GCAATG	3 cut(s)	946, 987, 1298
BsrI	ACTGG	7 cut(s)	78, 286, 507, 571, 581, 636, 1204
BssECI	CCNNGG	2 cut(s)	418, 1244
BssMI	GATC	4 cut(s)	217, 405, 652, 714
BssT1I	CCWWGG	1 cut(s)	1244
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	7 cut(s)	8, 109, 393, 524, 613, 794, 1048
BstAFI	CTTAAG	1 cut(s)	1063
BstBAI	YACGTR	1 cut(s)	1215
BstBI	TTCGAA	1 cut(s)	859
BstC8I	GCNNGC	8 cut(s)	147, 640, 874, 934, 1029, 1169, 1173, 1305
BstDEI	CTNAG	5 cut(s)	20, 444, 502, 1160, 1290
BstDSI	CCRYGG	1 cut(s)	1244
BstF5I	GGATG	4 cut(s)	595, 706, 745, 1256
BstHHI	GCGC	1 cut(s)	709
BstKTI	GATC	4 cut(s)	220, 408, 655, 717
BstMAI	GTCTC	3 cut(s)	98, 428, 1316
BstMBI	GATC	4 cut(s)	217, 405, 652, 714
BstMWI	GCNNNNNNNGC	1 cut(s)	644
BstNI	CCWGG	1 cut(s)	419
BstNSI	RCATGY	1 cut(s)	936
BstPAI	GACNNNNGTC	1 cut(s)	9
BstSCI	CCNGG	2 cut(s)	417, 719
BstSFI	CTRYAG	7 cut(s)	180, 195, 427, 731, 967, 1044, 1173
BstV1I	GCAGC	5 cut(s)	371, 656, 691, 934, 1250
BstX2I	RGATCY	2 cut(s)	217, 714
BstYI	RGATCY	2 cut(s)	217, 714
BsuRI	GGCC	3 cut(s)	638, 1249, 1288
BtgI	CCRYGG	1 cut(s)	1244
BtsCI	GGATG	4 cut(s)	595, 706, 745, 1256
BtsIMutI	CAGTG	3 cut(s)	588, 1053, 1278
BveI	ACCTGC	2 cut(s)	202, 697
Cac8I	GCNNGC	8 cut(s)	147, 640, 874, 934, 1029, 1169, 1173, 1305
CaiI	CAGNNNCTG	2 cut(s)	221, 338
CfoI	GCGC	1 cut(s)	709
Cfr13I	GGNCC	3 cut(s)	176, 573, 1286
Csp6I	GTAC	3 cut(s)	244, 525, 1408
CviAII	CATG	4 cut(s)	125, 697, 933, 1245
CviQI	GTAC	3 cut(s)	244, 525, 1408
DdeI	CTNAG	5 cut(s)	20, 444, 502, 1160, 1290
DpnI	GATC	4 cut(s)	219, 407, 654, 716
DpnII	GATC	4 cut(s)	217, 405, 652, 714
DraI	TTTAAA	1 cut(s)	1330
DrdI	GACNNNNNNGTC	1 cut(s)	681
DriI	GACNNNNNGTC	1 cut(s)	21
DseDI	GACNNNNNNGTC	1 cut(s)	681
Eam1105I	GACNNNNNGTC	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	1244
Eco147I	AGGCCT	1 cut(s)	638
Eco31I	GGTCTC	1 cut(s)	428
Eco47I	GGWCC	2 cut(s)	176, 573
Eco57I	CTGAAG	2 cut(s)	695, 1108
EcoO109I	RGGNCCY	1 cut(s)	573
EcoRII	CCWGG	1 cut(s)	417
EcoT14I	CCWWGG	1 cut(s)	1244
ErhI	CCWWGG	1 cut(s)	1244
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	4 cut(s)	128, 700, 936, 1248
FaqI	GGGAC	1 cut(s)	1261
FatI	CATG	4 cut(s)	124, 696, 932, 1244
FauI	CCCGC	2 cut(s)	1067, 1312
FauNDI	CATATG	1 cut(s)	1138
FblI	GTMKAC	1 cut(s)	1156
Fnu4HI	GCNGC	6 cut(s)	360, 670, 705, 937, 948, 1239
FokI	GGATG	4 cut(s)	602, 713, 752, 1243
Fsp4HI	GCNGC	6 cut(s)	360, 670, 705, 937, 948, 1239
FspBI	CTAG	1 cut(s)	162
GlaI	GCGC	1 cut(s)	708
GluI	GCNGC	6 cut(s)	360, 670, 705, 937, 948, 1239
GsuI	CTGGAG	1 cut(s)	653
HaeIII	GGCC	3 cut(s)	638, 1249, 1288
HapII	CCGG	1 cut(s)	720
HhaI	GCGC	1 cut(s)	709
Hin1II	CATG	4 cut(s)	128, 700, 936, 1248
Hin6I	GCGC	1 cut(s)	707
HinP1I	GCGC	1 cut(s)	707
HincII	GTYRAC	3 cut(s)	686, 1111, 1145
HindII	GTYRAC	3 cut(s)	686, 1111, 1145
HinfI	GANTC	3 cut(s)	16, 168, 461
HpaII	CCGG	1 cut(s)	720
HphI	GGTGA	2 cut(s)	183, 773
Hpy166II	GTNNAC	7 cut(s)	347, 389, 616, 686, 1111, 1145, 1157
Hpy188I	TCNGA	6 cut(s)	15, 340, 714, 838, 919, 1321
Hpy188III	TCNNGA	4 cut(s)	86, 215, 221, 1396
Hpy8I	GTNNAC	7 cut(s)	347, 389, 616, 686, 1111, 1145, 1157
HpyAV	CCTTC	5 cut(s)	168, 580, 924, 969, 1260
HpyCH4III	ACNGT	7 cut(s)	8, 109, 393, 524, 613, 794, 1048
HpyCH4IV	ACGT	1 cut(s)	1214
HpyF10VI	GCNNNNNNNGC	1 cut(s)	644
HpyF3I	CTNAG	5 cut(s)	20, 444, 502, 1160, 1290
HpySE526I	ACGT	1 cut(s)	1214
Hsp92II	CATG	4 cut(s)	128, 700, 936, 1248
HspAI	GCGC	1 cut(s)	707
Kzo9I	GATC	4 cut(s)	217, 405, 652, 714
LmnI	GCTCC	2 cut(s)	910, 1246
Lsp1109I	GCAGC	5 cut(s)	371, 656, 691, 934, 1250
LweI	GCATC	4 cut(s)	79, 344, 420, 691
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	1214
MaeIII	GTNAC	2 cut(s)	788, 1369
MalI	GATC	4 cut(s)	219, 407, 654, 716
MboI	GATC	4 cut(s)	217, 405, 652, 714
MboII	GAAGA	2 cut(s)	406, 546
MflI	RGATCY	2 cut(s)	217, 714
MluCI	AATT	7 cut(s)	298, 678, 751, 924, 1192, 1263, 1361
MlyI	GAGTC	1 cut(s)	10
MmeI	TCCRAC	2 cut(s)	281, 717
MnlI	CCTC	6 cut(s)	141, 628, 666, 1270, 1289, 1346
MroXI	GAANNNNTTC	1 cut(s)	231
MspCI	CTTAAG	1 cut(s)	1063
MspI	CCGG	1 cut(s)	720
MspR9I	CCNGG	2 cut(s)	419, 721
Mva1269I	GAATGC	1 cut(s)	1128
MvaI	CCWGG	1 cut(s)	419
MwoI	GCNNNNNNNGC	1 cut(s)	644
NciI	CCSGG	1 cut(s)	721
NcoI	CCATGG	1 cut(s)	1244
NdeI	CATATG	1 cut(s)	1138
NdeII	GATC	4 cut(s)	217, 405, 652, 714
NlaIII	CATG	4 cut(s)	128, 700, 936, 1248
NlaIV	GGNNCC	2 cut(s)	574, 912
NmeAIII	GCCGAG	1 cut(s)	419
NmuCI	GTSAC	1 cut(s)	788
NspI	RCATGY	1 cut(s)	936
NspV	TTCGAA	1 cut(s)	859
PaeI	GCATGC	1 cut(s)	936
PaqCI	CACCTGC	1 cut(s)	202
PceI	AGGCCT	1 cut(s)	638
PctI	GAATGC	1 cut(s)	1128
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	168, 461
PfoI	TCCNGGA	1 cut(s)	719
PkrI	GCNGC	6 cut(s)	361, 671, 706, 938, 949, 1240
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
Ppu21I	YACGTR	1 cut(s)	1215
PpuMI	RGGWCCY	1 cut(s)	573
PshAI	GACNNNNGTC	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	573
Psp6I	CCWGG	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	2 cut(s)	574, 912
PspPI	GGNCC	3 cut(s)	176, 573, 1286
PspPPI	RGGWCCY	1 cut(s)	573
PstI	CTGCAG	3 cut(s)	199, 735, 1177
PstNI	CAGNNNCTG	2 cut(s)	221, 338
PsuI	RGATCY	2 cut(s)	217, 714
RsaI	GTAC	3 cut(s)	245, 526, 1409
RsaNI	GTAC	3 cut(s)	244, 525, 1408
SatI	GCNGC	6 cut(s)	360, 670, 705, 937, 948, 1239
Sau3AI	GATC	4 cut(s)	217, 405, 652, 714
Sau96I	GGNCC	3 cut(s)	176, 573, 1286
SchI	GAGTC	1 cut(s)	10
ScrFI	CCNGG	2 cut(s)	419, 721
SfaNI	GCATC	4 cut(s)	79, 344, 420, 691
SfcI	CTRYAG	7 cut(s)	180, 195, 427, 731, 967, 1044, 1173
SfuI	TTCGAA	1 cut(s)	859
SinI	GGWCC	2 cut(s)	176, 573
SmlI	CTYRAG	1 cut(s)	1063
SmoI	CTYRAG	1 cut(s)	1063
SphI	GCATGC	1 cut(s)	936
Sse9I	AATT	7 cut(s)	298, 678, 751, 924, 1192, 1263, 1361
SseBI	AGGCCT	1 cut(s)	638
SsiI	CCGC	6 cut(s)	236, 306, 409, 937, 1074, 1305
SspI	AATATT	3 cut(s)	864, 1090, 1234
SspMI	CTAG	1 cut(s)	162
StuI	AGGCCT	1 cut(s)	638
StyD4I	CCNGG	2 cut(s)	417, 719
StyI	CCWWGG	1 cut(s)	1244
TaaI	ACNGT	7 cut(s)	8, 109, 393, 524, 613, 794, 1048
TaiI	ACGT	1 cut(s)	1217
TaqI	TCGA	3 cut(s)	314, 777, 859
TasI	AATT	7 cut(s)	298, 678, 751, 924, 1192, 1263, 1361
TatI	WGTACW	2 cut(s)	524, 1407
TauI	GCSGC	1 cut(s)	939
TfiI	GAWTC	2 cut(s)	168, 461
TscAI	CASTG	3 cut(s)	588, 1053, 1278
TseFI	GTSAC	1 cut(s)	788
TseI	GCWGC	5 cut(s)	359, 669, 704, 947, 1238
Tsp45I	GTSAC	1 cut(s)	788
TspDTI	ATGAA	3 cut(s)	1242, 1257, 1371
TspRI	CASTG	3 cut(s)	588, 1053, 1278
Vha464I	CTTAAG	1 cut(s)	1063
VpaK11BI	GGWCC	2 cut(s)	176, 573
XapI	RAATTY	2 cut(s)	751, 1361
XceI	RCATGY	1 cut(s)	936
XmiI	GTMKAC	1 cut(s)	1156
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.