Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0002958

Physical Location & Seq

Genomic Coordinates Forward (+)

29186429 .. 29188942

Gene Structure 2514 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1205900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGGTCTTGATCTTGATCTGGAATCCATATCGGAGGCGACGTCAGGAGCCGTTGGATCACTCGTCAGCACCACCCTGCTGTACCCGCTCGACACCTGCAAAACCAGGTACCAAGCCGAAGTTCGAGGCAATGATCGGGCCAAATACAGGAACCTTTCGGATGTGTTTTGGGAAGCGATATCCACACGTCAGGTTCTTTCACTGTATCAGGGTCTCGAAACAAAAAACCTGCAATCCTTCATTTCTCAGTTTATTTACTTTTATGGGTATAGCTACTTCAAAAGACTCTATGTGGAAACAAGTGGGGTTAAATCGATAGGGATGAGAGCAAACTTAGTTCTTGCTGCTGCTGCTGGTGCTTGCACTGCCATTGTAACTCAGCCGTTGGATACAGCCTCGTCAAGGATGCAGACAAGTGCTTTTGGAAAATCCAAAGGATTGTGGAAGACTCTTACAGAGGGCAGCTGGATTGATGCATTTGATGGTCTCGGAATCTCCCTGTTGCTGACCGCGAACCCTGCAATTCAGTATACAGTGTTCGATCAGCTAAAACTCAGACTCCTGAAAAGGAAGAATAAAACGGGCAAGGATTCTTCTCCAGAAGCCCTTTCTGCTTTCACAGCATTTGTTTTAGGTGCAGTCTCAAAGACTGTTGCCACCGTTCTGACCTACCCTGCCATCAGGTGTAAGGTCATGATCCAAGCTGCTGACGAAGATGATGGAAAAACCAAAAACCCCCAGCCAAAGTCCAGCAAAACAATTCCAGCAGTTCTATGCGCTATATGGAAAAGGGAAGGGATTCTTGGCTTCTTCAAGGGATTGCATGCACAGATCTTGAAGACCGTCCTGAGCTCGGCATTGCTTCTGATGATCAAGGAAAAGATCTCCGCCGCTACTTGGGTTCTTCTACTTTCAATCAGAAGGTCTCTATTGCTCACAATGGGCAGACTAAAAAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005777 GO:0005778 GO:0005779 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0007275 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009056 GO:0009062 GO:0009791 GO:0009850 GO:0009987 GO:0010817 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016042 GO:0016054 GO:0019395 GO:0019752 GO:0019866 GO:0022857 GO:0030258 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032787 GO:0034220 GO:0034440 GO:0034641 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046483 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0055114 GO:0065007 GO:0065008 GO:0071702 GO:0071704 GO:0071705 GO:0072329 GO:0080024 GO:0090351 GO:0098588 GO:0098656 GO:0098805 GO:1901264 GO:1901360 GO:1901505 GO:1901564 GO:1901575 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

321

Amino Acids

35.02

Weight (kDa)

9.68

Isoelectric Point (pI)

27.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	9 - 99	1.8e-14	Mitochondrial carrier protein
Mito_carr	PF00153	108 - 190	2.6e-07	Mitochondrial carrier protein
Mito_carr	PF00153	203 - 296	1.7e-13	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05290 AT5G27520
fragaria_vesca	FvH4_4g14900 FvH4_6g05760
malus_domestica	MD04G1205900.v1.1 MD12G1220000.v1.1 MD13G1186400.v1.1 MD16G1187100.v1.1
prunus_persica	Prupe.1G154100_v2.0.a1 Prupe.1G154100_v2.0.a1 Prupe.6G326700_v2.0.a1
pyrus_communis	pycom04g18220 pycom12g20540 pycom13g16130 pycom16g15710
rosa_chinensis	RchiOBHm_Chr3g0454671 RchiOBHm_Chr4g0417191 RchiOBHm_Chr4g0417301
rosa_laevigata	RLG00000007919 RLG00000025425
rosa_multiflora	Rmu_sc0000646.1_g000002 Rmu_sc0002129.1_g000048
rosa_roxburghii	Rroxscaffold_5G00361050 Rroxscaffold_6G00424870
rosa_rugosa	Rorug03G0001100.1 Rorug04G0146200 Rorug04G0146600
rosa_samantha	Rh3AG061000 Rh3CG061700 Rh3DG062600 Rh4AG209400 Rh4AG210200 Rh4CG220600 Rh4CG221200 Rh4DG207200 Rh4DG208200
rosa_wichuraiana	Rw3G004750 Rw4G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	104
AatII	GACGTC	1 cut(s)	44
Acc36I	ACCTGC	2 cut(s)	104, 237
Acc65I	GGTACC	1 cut(s)	108
AccB1I	GGYRCC	1 cut(s)	108
AccBSI	CCGCTC	1 cut(s)	88
AccI	GTMKAC	1 cut(s)	530
AccII	CGCG	1 cut(s)	512
AciI	CCGC	4 cut(s)	86, 510, 888, 891
AclWI	GGATC	2 cut(s)	64, 691
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	2 cut(s)	83, 110
AfiI	CCNNNNNNNGG	4 cut(s)	147, 402, 853, 897
AflIII	ACRYGT	1 cut(s)	185
AgsI	TTSAA	4 cut(s)	280, 814, 838, 915
AjiI	CACGTC	1 cut(s)	188
AjnI	CCWGG	1 cut(s)	104
AjuI	GAANNNNNNNTTGG	4 cut(s)	105, 137, 786, 818
AluBI	AGCT	5 cut(s)	273, 465, 547, 704, 852
AluI	AGCT	5 cut(s)	273, 465, 547, 704, 852
Alw21I	GWGCWC	1 cut(s)	854
Alw26I	GTCTC	4 cut(s)	218, 491, 646, 930
AlwI	GGATC	2 cut(s)	64, 691
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	5 cut(s)	344, 347, 350, 462, 704
Asp700I	GAANNNNTTC	1 cut(s)	798
Asp718I	GGTACC	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	779
AspS9I	GGNCC	1 cut(s)	138
BanI	GGYRCC	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	854
BarI	GAAGNNNNNNTAC	2 cut(s)	260, 292
BbsI	GAAGAC	2 cut(s)	452, 845
Bbv12I	GWGCWC	1 cut(s)	854
BbvI	GCAGC	5 cut(s)	331, 334, 337, 474, 691
BccI	CCATC	3 cut(s)	476, 686, 713
BceAI	ACGGC	2 cut(s)	35, 367
BciT130I	CCWGG	1 cut(s)	106
BciVI	GTATCC	1 cut(s)	382
BclI	TGATCA	1 cut(s)	870
BcoDI	GTCTC	4 cut(s)	218, 491, 646, 930
BfuAI	ACCTGC	2 cut(s)	104, 237
BfuI	GTATCC	1 cut(s)	382
BglII	AGATCT	2 cut(s)	831, 882
BisI	GCNGC	6 cut(s)	345, 348, 351, 463, 705, 891
BlsI	GCNGC	6 cut(s)	346, 349, 352, 464, 706, 892
Bme1390I	CCNGG	1 cut(s)	106
BmgBI	CACGTC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	3 cut(s)	49, 110, 152
BmrFI	CCNGG	1 cut(s)	106
BmsI	GCATC	2 cut(s)	396, 463
BpiI	GAAGAC	2 cut(s)	452, 845
BpmI	CTGGAG	1 cut(s)	582
Bpu10I	CCTNAGC	1 cut(s)	848
Bsa29I	ATCGAT	1 cut(s)	314
BsaBI	GATNNNNATC	1 cut(s)	15
BsaHI	GRCGYC	1 cut(s)	41
BsaI	GGTCTC	3 cut(s)	218, 491, 930
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 543, 573
Bsc4I	CCNNNNNNNGG	4 cut(s)	147, 402, 853, 897
Bse3DI	GCAATG	2 cut(s)	136, 857
Bse8I	GATNNNNATC	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	106
BseCI	ATCGAT	1 cut(s)	314
BseGI	GGATG	3 cut(s)	166, 327, 411
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	4 cut(s)	147, 402, 853, 897
BseMI	GCAATG	2 cut(s)	136, 857
BseMII	CTCAG	4 cut(s)	260, 392, 568, 839
BseXI	GCAGC	5 cut(s)	331, 334, 337, 474, 691
BseYI	CCCAGC	1 cut(s)	738
BsgI	GTGCAG	1 cut(s)	657
Bsh1236I	CGCG	1 cut(s)	512
BshFI	GGCC	1 cut(s)	140
BshNI	GGYRCC	1 cut(s)	108
BshVI	ATCGAT	1 cut(s)	314
BsiHKAI	GWGCWC	1 cut(s)	854
BslI	CCNNNNNNNGG	4 cut(s)	147, 402, 853, 897
BsmAI	GTCTC	4 cut(s)	218, 491, 646, 930
BsnI	GGCC	1 cut(s)	140
Bso31I	GGTCTC	3 cut(s)	218, 491, 930
Bsp1286I	GDGCHC	1 cut(s)	854
Bsp143I	GATC	9 cut(s)	10, 16, 56, 133, 541, 696, 831, 870, 882
BspACI	CCGC	4 cut(s)	86, 510, 888, 891
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	4 cut(s)	259, 391, 567, 840
BspDI	ATCGAT	1 cut(s)	314
BspFNI	CGCG	1 cut(s)	512
BspHI	TCATGA	1 cut(s)	693
BspLI	GGNNCC	3 cut(s)	49, 110, 152
BspMI	ACCTGC	2 cut(s)	104, 237
BspPI	GGATC	2 cut(s)	64, 691
BspT107I	GGYRCC	1 cut(s)	108
BspTNI	GGTCTC	3 cut(s)	218, 491, 930
BsrBI	CCGCTC	1 cut(s)	88
BsrDI	GCAATG	2 cut(s)	136, 857
BssMI	GATC	9 cut(s)	10, 16, 56, 133, 541, 696, 831, 870, 882
BssNAI	GTATAC	1 cut(s)	531
BssNI	GRCGYC	1 cut(s)	41
Bst1107I	GTATAC	1 cut(s)	531
Bst2UI	CCWGG	1 cut(s)	106
Bst4CI	ACNGT	5 cut(s)	204, 535, 652, 661, 844
BstACI	GRCGYC	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	361, 825
BstDEI	CTNAG	5 cut(s)	246, 334, 378, 554, 848
BstENI	CCTNNNNNAGG	1 cut(s)	400
BstF5I	GGATG	3 cut(s)	166, 327, 411
BstFNI	CGCG	1 cut(s)	512
BstHHI	GCGC	1 cut(s)	779
BstKTI	GATC	9 cut(s)	13, 19, 59, 136, 544, 699, 834, 873, 885
BstMAI	GTCTC	4 cut(s)	218, 491, 646, 930
BstMBI	GATC	9 cut(s)	10, 16, 56, 133, 541, 696, 831, 870, 882
BstMWI	GCNNNNNNNGC	7 cut(s)	85, 350, 356, 365, 518, 611, 620
BstNI	CCWGG	1 cut(s)	106
BstNSI	RCATGY	1 cut(s)	827
BstSCI	CCNGG	1 cut(s)	104
BstUI	CGCG	1 cut(s)	512
BstV1I	GCAGC	5 cut(s)	331, 334, 337, 474, 691
BstV2I	GAAGAC	2 cut(s)	452, 845
BstX2I	RGATCY	2 cut(s)	831, 882
BstYI	RGATCY	2 cut(s)	831, 882
BstZ17I	GTATAC	1 cut(s)	531
Bsu15I	ATCGAT	1 cut(s)	314
BsuI	GTATCC	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	140
BsuTUI	ATCGAT	1 cut(s)	314
BtrI	CACGTC	1 cut(s)	188
BtsCI	GGATG	3 cut(s)	166, 327, 411
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	3 cut(s)	200, 363, 540
BveI	ACCTGC	2 cut(s)	104, 237
Cac8I	GCNNGC	2 cut(s)	361, 825
CciI	TCATGA	1 cut(s)	693
CfoI	GCGC	1 cut(s)	779
Cfr13I	GGNCC	1 cut(s)	138
ClaI	ATCGAT	1 cut(s)	314
CsiI	ACCWGGT	1 cut(s)	104
Csp6I	GTAC	2 cut(s)	82, 109
CviAII	CATG	2 cut(s)	694, 824
CviQI	GTAC	2 cut(s)	82, 109
DdeI	CTNAG	5 cut(s)	246, 334, 378, 554, 848
DpnI	GATC	9 cut(s)	12, 18, 58, 135, 543, 698, 833, 872, 884
DpnII	GATC	9 cut(s)	10, 16, 56, 133, 541, 696, 831, 870, 882
EciI	GGCGGA	1 cut(s)	877
Ecl136II	GAGCTC	1 cut(s)	852
Eco24I	GRGCYC	1 cut(s)	854
Eco31I	GGTCTC	3 cut(s)	218, 491, 930
Eco32I	GATATC	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	852
EcoICRI	GAGCTC	1 cut(s)	852
EcoNI	CCTNNNNNAGG	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	104
EcoRV	GATATC	1 cut(s)	180
EcoT22I	ATGCAT	1 cut(s)	478
EcoT38I	GRGCYC	1 cut(s)	854
FaeI	CATG	2 cut(s)	697, 827
FalI	AAGNNNNNCTT	2 cut(s)	786, 818
FatI	CATG	2 cut(s)	693, 823
FauI	CCCGC	1 cut(s)	93
FbaI	TGATCA	1 cut(s)	870
FblI	GTMKAC	1 cut(s)	530
Fnu4HI	GCNGC	6 cut(s)	345, 348, 351, 463, 705, 891
FokI	GGATG	3 cut(s)	173, 334, 418
FriOI	GRGCYC	1 cut(s)	854
Fsp4HI	GCNGC	6 cut(s)	345, 348, 351, 463, 705, 891
GlaI	GCGC	1 cut(s)	778
GluI	GCNGC	6 cut(s)	345, 348, 351, 463, 705, 891
GsaI	CCCAGC	1 cut(s)	742
GsuI	CTGGAG	1 cut(s)	582
HaeIII	GGCC	1 cut(s)	140
HhaI	GCGC	1 cut(s)	779
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	2 cut(s)	697, 827
Hin6I	GCGC	1 cut(s)	777
HinP1I	GCGC	1 cut(s)	777
HinfI	GANTC	7 cut(s)	23, 285, 448, 492, 558, 590, 799
Hpy166II	GTNNAC	1 cut(s)	531
Hpy188I	TCNGA	7 cut(s)	34, 160, 491, 557, 666, 867, 920
Hpy8I	GTNNAC	1 cut(s)	531
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	3 cut(s)	247, 788, 915
HpyCH4III	ACNGT	5 cut(s)	204, 535, 652, 661, 844
HpyCH4IV	ACGT	2 cut(s)	41, 187
HpyCH4V	TGCA	9 cut(s)	99, 232, 363, 409, 476, 521, 638, 823, 827
HpyF10VI	GCNNNNNNNGC	7 cut(s)	85, 350, 356, 365, 518, 611, 620
HpyF3I	CTNAG	5 cut(s)	246, 334, 378, 554, 848
HpySE526I	ACGT	2 cut(s)	41, 187
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	697, 827
HspAI	GCGC	1 cut(s)	777
KpnI	GGTACC	1 cut(s)	112
Ksp22I	TGATCA	1 cut(s)	870
Kzo9I	GATC	9 cut(s)	10, 16, 56, 133, 541, 696, 831, 870, 882
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	5 cut(s)	331, 334, 337, 474, 691
LweI	GCATC	2 cut(s)	396, 463
MabI	ACCWGGT	1 cut(s)	104
MaeII	ACGT	2 cut(s)	41, 187
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	9 cut(s)	12, 18, 58, 135, 543, 698, 833, 872, 884
MbiI	CCGCTC	1 cut(s)	88
MboI	GATC	9 cut(s)	10, 16, 56, 133, 541, 696, 831, 870, 882
MboII	GAAGA	7 cut(s)	457, 583, 585, 725, 802, 850, 896
MflI	RGATCY	2 cut(s)	831, 882
MhlI	GDGCHC	1 cut(s)	854
MluCI	AATT	2 cut(s)	522, 759
MlyI	GAGTC	3 cut(s)	279, 442, 552
MmeI	TCCRAC	2 cut(s)	34, 366
MnlI	CCTC	4 cut(s)	28, 119, 406, 451
Mph1103I	ATGCAT	1 cut(s)	478
MroXI	GAANNNNTTC	1 cut(s)	798
MseI	TTAA	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	465
MspR9I	CCNGG	1 cut(s)	106
MvaI	CCWGG	1 cut(s)	106
MvnI	CGCG	1 cut(s)	512
MwoI	GCNNNNNNNGC	7 cut(s)	85, 350, 356, 365, 518, 611, 620
NdeII	GATC	9 cut(s)	10, 16, 56, 133, 541, 696, 831, 870, 882
NlaIII	CATG	2 cut(s)	697, 827
NlaIV	GGNNCC	3 cut(s)	49, 110, 152
NmeAIII	GCCGAG	1 cut(s)	833
NsiI	ATGCAT	1 cut(s)	478
NspI	RCATGY	1 cut(s)	827
PaeI	GCATGC	1 cut(s)	827
PagI	TCATGA	1 cut(s)	693
PaqCI	CACCTGC	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	798
PfeI	GAWTC	4 cut(s)	23, 492, 590, 799
PkrI	GCNGC	6 cut(s)	346, 349, 352, 464, 706, 892
PleI	GAGTC	3 cut(s)	279, 442, 552
PpsI	GAGTC	3 cut(s)	279, 442, 552
Psp124BI	GAGCTC	1 cut(s)	854
Psp6I	CCWGG	1 cut(s)	104
PspFI	CCCAGC	1 cut(s)	738
PspGI	CCWGG	1 cut(s)	104
PspN4I	GGNNCC	3 cut(s)	49, 110, 152
PspPI	GGNCC	1 cut(s)	138
PsrI	GAACNNNNNNTAC	2 cut(s)	521, 553
PsuI	RGATCY	2 cut(s)	831, 882
PvuII	CAGCTG	1 cut(s)	465
RsaI	GTAC	2 cut(s)	83, 110
RsaNI	GTAC	2 cut(s)	82, 109
SacI	GAGCTC	1 cut(s)	854
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	6 cut(s)	345, 348, 351, 463, 705, 891
Sau3AI	GATC	9 cut(s)	10, 16, 56, 133, 541, 696, 831, 870, 882
Sau96I	GGNCC	1 cut(s)	138
SchI	GAGTC	3 cut(s)	279, 442, 552
ScrFI	CCNGG	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	854
SexAI	ACCWGGT	1 cut(s)	104
SfaNI	GCATC	2 cut(s)	396, 463
SphI	GCATGC	1 cut(s)	827
Sse9I	AATT	2 cut(s)	522, 759
SsiI	CCGC	4 cut(s)	86, 510, 888, 891
SstI	GAGCTC	1 cut(s)	854
StyD4I	CCNGG	1 cut(s)	104
TaaI	ACNGT	5 cut(s)	204, 535, 652, 661, 844
TaiI	ACGT	2 cut(s)	44, 190
TaqI	TCGA	5 cut(s)	90, 124, 216, 314, 540
TasI	AATT	2 cut(s)	522, 759
TauI	GCSGC	1 cut(s)	893
TfiI	GAWTC	4 cut(s)	23, 492, 590, 799
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	3 cut(s)	207, 370, 540
TseI	GCWGC	5 cut(s)	344, 347, 350, 462, 704
TspDTI	ATGAA	1 cut(s)	229
TspRI	CASTG	3 cut(s)	207, 370, 540
XagI	CCTNNNNNAGG	1 cut(s)	400
XceI	RCATGY	1 cut(s)	827
XmiI	GTMKAC	1 cut(s)	530
XmnI	GAANNNNTTC	1 cut(s)	798
ZraI	GACGTC	1 cut(s)	42
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.