Rh3DG062600

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
4169861 .. 4172226
2366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG062600.1

Sequence Viewer

Length: 957 bp
ATGGATCTAGAATCTATATCAGAGGCCACTTCAGGAGCCATAGGGTCACTGTTGAGCACCACCATTCTGTACCCACTTGACACCTGCAAAACCAGGTACCAAGCTGACGTCAGAGCCAATGATCAGGCCAAGTACAGGAACCTCTCAGATGTATTCTGGGAAGCAATATCCACTCGGCAGGTTCTTTCACTGTATCAGGGTCTGGAAACAAAAAACCTGCAATCCTTCATTTCTCAGTTTGTTTACTTTTATGGGTATAGCTACTTCAAAAGATTATATCTGGAAACCAGCGGTTCTAAATCAATAGGTACAACAGCAAACTTGATCATTGCTGCTGCTGCTGGGGCTTGCACTGCCATTGCCACCCAGCCTCTGGATACAGCATCGTCAAGGATGCAGACAAGTGCCTTTGGAAAATCCAAAGGGCTGTGGAAGACCCTTACAGAGGGCACCTGGAGTGATGCATTTGATGGTCTTGGAATCTCCCTGTTGCTTACAGCGAACCCTGCAATTCAGTATACAGTGTTTGATCAGCTAAAACAAAGACTCCTGAAAGGAAAACAGGATAAATTGGCCAAGGGCTCATCCCCGGAAGCCCTTTCTGCCTTTTCAGCATTTGTTCTAGGTGCAGTCTCAAAAAGTGTTGCTACCGTTTTGACCTATCCTGCCATCAGGTGTAAGGTCATGATCCAAGCTGCTGACCCAGATGATGACGATAAAACCAAGGAAGCCCGCCCAAGGATCCGAAAAACAATTCCAGGAACTCTCAGTGCTATATGGAAAAGGGAAGGCATTCCAGGCTACTTCAAAGGATTGCATGCCCAGATCTTGAAAACTGTTCTGAGCTCCGCATTGCTTTTGATGATCAAGGAAAAAATTTCTGCTACTACTTGGGTTCTCATACTTGCAATCAGAAGGTATCTATTCCTCACAAGAGGCAGAGTAAAAAATGCATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

318

Amino Acids

34.9

Weight (kDa)

9.65

Isoelectric Point (pI)

21.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 5 - 95 6.1e-15 Mitochondrial carrier protein
Mito_carr PF00153 103 - 185 4.7e-08 Mitochondrial carrier protein
Mito_carr PF00153 200 - 294 2.1e-12 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 92
AatII GACGTC 1 cut(s) 111
Acc36I ACCTGC 3 cut(s) 92, 169, 225
Acc65I GGTACC 1 cut(s) 96
AccB1I GGYRCC 2 cut(s) 96, 449
AccB7I CCANNNNNTGG 1 cut(s) 373
AccI GTMKAC 1 cut(s) 518
AciI CCGC 3 cut(s) 291, 733, 849
AclWI GGATC 4 cut(s) 12, 682, 736, 749
AcoI YGGCCR 1 cut(s) 573
AcsI RAATTY 1 cut(s) 876
AcuI CTGAAG 1 cut(s) 15
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 4 cut(s) 71, 98, 134, 310
AfiI CCNNNNNNNGG 4 cut(s) 135, 373, 445, 738
AgsI TTSAA 3 cut(s) 268, 808, 832
AjnI CCWGG 4 cut(s) 92, 452, 757, 796
AluBI AGCT 5 cut(s) 104, 261, 535, 695, 846
AluI AGCT 5 cut(s) 104, 261, 535, 695, 846
Alw21I GWGCWC 2 cut(s) 59, 848
Alw26I GTCTC 1 cut(s) 637
AlwI GGATC 4 cut(s) 12, 682, 736, 749
AlwNI CAGNNNCTG 2 cut(s) 202, 373
AoxI GGCC 3 cut(s) 24, 126, 573
ApeKI GCWGC 4 cut(s) 332, 335, 338, 695
ApoI RAATTY 1 cut(s) 876
Asp700I GAANNNNTTC 1 cut(s) 792
Asp718I GGTACC 1 cut(s) 96
AsuC2I CCSGG 1 cut(s) 590
BaeGI GKGCMC 1 cut(s) 452
BalI TGGCCA 1 cut(s) 575
BamHI GGATCC 1 cut(s) 741
BanI GGYRCC 2 cut(s) 96, 449
BanII GRGCYC 2 cut(s) 584, 848
BarI GAAGNNNNNNTAC 2 cut(s) 248, 280
BbsI GAAGAC 1 cut(s) 440
Bbv12I GWGCWC 2 cut(s) 59, 848
BbvI GCAGC 4 cut(s) 319, 322, 325, 682
BccI CCATC 2 cut(s) 464, 677
BciT130I CCWGG 4 cut(s) 94, 454, 759, 798
BciVI GTATCC 1 cut(s) 370
BclI TGATCA 4 cut(s) 121, 324, 529, 864
BcnI CCSGG 1 cut(s) 590
BcoDI GTCTC 1 cut(s) 637
BfaI CTAG 2 cut(s) 8, 623
BfuAI ACCTGC 3 cut(s) 92, 169, 225
BfuI GTATCC 1 cut(s) 370
BglII AGATCT 1 cut(s) 825
BisI GCNGC 4 cut(s) 333, 336, 339, 696
BlsI GCNGC 4 cut(s) 334, 337, 340, 697
Bme1390I CCNGG 5 cut(s) 94, 454, 590, 759, 798
BmiI GGNNCC 5 cut(s) 37, 98, 140, 451, 743
BmrFI CCNGG 5 cut(s) 94, 454, 590, 759, 798
BmsI GCATC 3 cut(s) 384, 392, 451
BpiI GAAGAC 1 cut(s) 440
BpmI CTGGAG 1 cut(s) 475
BpuMI CCSGG 1 cut(s) 590
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 4 cut(s) 576, 588, 723, 737
BsaXI ACNNNNNCTCC 2 cut(s) 531, 561
Bsc4I CCNNNNNNNGG 4 cut(s) 135, 373, 445, 738
Bse3DI GCAATG 3 cut(s) 327, 357, 851
BseBI CCWGG 4 cut(s) 94, 454, 759, 798
BseDI CCNNGG 4 cut(s) 576, 588, 723, 737
BseGI GGATG 2 cut(s) 399, 584
BseLI CCNNNNNNNGG 4 cut(s) 135, 373, 445, 738
BseMI GCAATG 3 cut(s) 327, 357, 851
BseMII CTCAG 4 cut(s) 159, 248, 781, 833
BseSI GKGCMC 1 cut(s) 452
BseXI GCAGC 4 cut(s) 319, 322, 325, 682
BseYI CCCAGC 2 cut(s) 341, 366
BsgI GTGCAG 1 cut(s) 648
BshFI GGCC 3 cut(s) 26, 128, 575
BshNI GGYRCC 2 cut(s) 96, 449
BsiHKAI GWGCWC 2 cut(s) 59, 848
BsiSI CCGG 1 cut(s) 590
BslI CCNNNNNNNGG 4 cut(s) 135, 373, 445, 738
BsmAI GTCTC 1 cut(s) 637
BsmI GAATGC 1 cut(s) 792
BsnI GGCC 3 cut(s) 26, 128, 575
Bsp1286I GDGCHC 4 cut(s) 59, 452, 584, 848
Bsp143I GATC 8 cut(s) 4, 121, 324, 529, 687, 741, 825, 864
BspACI CCGC 3 cut(s) 291, 733, 849
BspANI GGCC 3 cut(s) 26, 128, 575
BspCNI CTCAG 4 cut(s) 158, 247, 780, 834
BspHI TCATGA 1 cut(s) 684
BspLI GGNNCC 5 cut(s) 37, 98, 140, 451, 743
BspMI ACCTGC 3 cut(s) 92, 169, 225
BspPI GGATC 4 cut(s) 12, 682, 736, 749
BspT107I GGYRCC 2 cut(s) 96, 449
BsrDI GCAATG 3 cut(s) 327, 357, 851
BssECI CCNNGG 4 cut(s) 576, 588, 723, 737
BssMI GATC 8 cut(s) 4, 121, 324, 529, 687, 741, 825, 864
BssNAI GTATAC 1 cut(s) 519
BssNI GRCGYC 1 cut(s) 108
BssT1I CCWWGG 3 cut(s) 576, 723, 737
Bst1107I GTATAC 1 cut(s) 519
Bst2UI CCWGG 4 cut(s) 94, 454, 759, 798
Bst4CI ACNGT 5 cut(s) 51, 192, 523, 652, 838
BstACI GRCGYC 1 cut(s) 108
BstC8I GCNNGC 3 cut(s) 349, 733, 819
BstDEI CTNAG 4 cut(s) 145, 234, 767, 842
BstENI CCTNNNNNAGG 1 cut(s) 443
BstF5I GGATG 2 cut(s) 399, 584
BstKTI GATC 8 cut(s) 7, 124, 327, 532, 690, 744, 828, 867
BstMAI GTCTC 1 cut(s) 637
BstMBI GATC 8 cut(s) 4, 121, 324, 529, 687, 741, 825, 864
BstMWI GCNNNNNNNGC 7 cut(s) 338, 344, 353, 506, 602, 611, 798
BstNI CCWGG 4 cut(s) 94, 454, 759, 798
BstNSI RCATGY 1 cut(s) 821
BstSCI CCNGG 5 cut(s) 92, 452, 588, 757, 796
BstSLI GKGCMC 1 cut(s) 452
BstV1I GCAGC 4 cut(s) 319, 322, 325, 682
BstV2I GAAGAC 1 cut(s) 440
BstX2I RGATCY 3 cut(s) 4, 741, 825
BstYI RGATCY 3 cut(s) 4, 741, 825
BstZ17I GTATAC 1 cut(s) 519
BsuI GTATCC 1 cut(s) 370
BsuRI GGCC 3 cut(s) 26, 128, 575
BtsCI GGATG 2 cut(s) 399, 584
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 5 cut(s) 47, 188, 351, 528, 775
BveI ACCTGC 3 cut(s) 92, 169, 225
Cac8I GCNNGC 3 cut(s) 349, 733, 819
CaiI CAGNNNCTG 2 cut(s) 202, 373
CciI TCATGA 1 cut(s) 684
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 4 cut(s) 70, 97, 133, 309
CviAII CATG 3 cut(s) 685, 818, 954
CviQI GTAC 4 cut(s) 70, 97, 133, 309
DdeI CTNAG 4 cut(s) 145, 234, 767, 842
DpnI GATC 8 cut(s) 6, 123, 326, 531, 689, 743, 827, 866
DpnII GATC 8 cut(s) 4, 121, 324, 529, 687, 741, 825, 864
EaeI YGGCCR 1 cut(s) 573
Ecl136II GAGCTC 1 cut(s) 846
Eco130I CCWWGG 3 cut(s) 576, 723, 737
Eco24I GRGCYC 2 cut(s) 584, 848
Eco53kI GAGCTC 1 cut(s) 846
Eco57I CTGAAG 1 cut(s) 15
EcoICRI GAGCTC 1 cut(s) 846
EcoNI CCTNNNNNAGG 1 cut(s) 443
EcoRII CCWGG 4 cut(s) 92, 452, 757, 796
EcoT14I CCWWGG 3 cut(s) 576, 723, 737
EcoT22I ATGCAT 2 cut(s) 466, 955
EcoT38I GRGCYC 2 cut(s) 584, 848
ErhI CCWWGG 3 cut(s) 576, 723, 737
FaeI CATG 3 cut(s) 688, 821, 957
FatI CATG 3 cut(s) 684, 817, 953
FauI CCCGC 1 cut(s) 740
FbaI TGATCA 4 cut(s) 121, 324, 529, 864
FblI GTMKAC 1 cut(s) 518
Fnu4HI GCNGC 4 cut(s) 333, 336, 339, 696
FokI GGATG 2 cut(s) 406, 571
FriOI GRGCYC 2 cut(s) 584, 848
Fsp4HI GCNGC 4 cut(s) 333, 336, 339, 696
FspBI CTAG 2 cut(s) 8, 623
GluI GCNGC 4 cut(s) 333, 336, 339, 696
GsaI CCCAGC 2 cut(s) 345, 370
GsuI CTGGAG 1 cut(s) 475
HaeIII GGCC 3 cut(s) 26, 128, 575
HapII CCGG 1 cut(s) 590
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 3 cut(s) 688, 821, 957
HinfI GANTC 3 cut(s) 11, 480, 546
HpaII CCGG 1 cut(s) 590
Hpy166II GTNNAC 2 cut(s) 244, 519
Hpy188I TCNGA 6 cut(s) 22, 113, 148, 746, 843, 914
Hpy188III TCNNGA 8 cut(s) 8, 33, 203, 281, 374, 550, 685, 829
Hpy8I GTNNAC 2 cut(s) 244, 519
HpyAV CCTTC 3 cut(s) 235, 782, 909
HpyCH4III ACNGT 5 cut(s) 51, 192, 523, 652, 838
HpyCH4IV ACGT 1 cut(s) 108
HpyF10VI GCNNNNNNNGC 7 cut(s) 338, 344, 353, 506, 602, 611, 798
HpyF3I CTNAG 4 cut(s) 145, 234, 767, 842
HpySE526I ACGT 1 cut(s) 108
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 3 cut(s) 688, 821, 957
KpnI GGTACC 1 cut(s) 100
Ksp22I TGATCA 4 cut(s) 121, 324, 529, 864
Kzo9I GATC 8 cut(s) 4, 121, 324, 529, 687, 741, 825, 864
LmnI GCTCC 2 cut(s) 35, 851
Lsp1109I GCAGC 4 cut(s) 319, 322, 325, 682
LweI GCATC 3 cut(s) 384, 392, 451
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 2 cut(s) 8, 623
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 45
MalI GATC 8 cut(s) 6, 123, 326, 531, 689, 743, 827, 866
MboI GATC 8 cut(s) 4, 121, 324, 529, 687, 741, 825, 864
MboII GAAGA 1 cut(s) 445
MflI RGATCY 3 cut(s) 4, 741, 825
MhlI GDGCHC 4 cut(s) 59, 452, 584, 848
MlsI TGGCCA 1 cut(s) 575
MluCI AATT 4 cut(s) 510, 569, 753, 876
MluNI TGGCCA 1 cut(s) 575
MlyI GAGTC 1 cut(s) 540
MnlI CCTC 6 cut(s) 16, 152, 381, 439, 929, 938
Mox20I TGGCCA 1 cut(s) 575
Mph1103I ATGCAT 2 cut(s) 466, 955
MroXI GAANNNNTTC 1 cut(s) 792
MscI TGGCCA 1 cut(s) 575
Msp20I TGGCCA 1 cut(s) 575
MspA1I CMGCKG 1 cut(s) 291
MspI CCGG 1 cut(s) 590
MspR9I CCNGG 5 cut(s) 94, 454, 590, 759, 798
Mva1269I GAATGC 1 cut(s) 792
MvaI CCWGG 4 cut(s) 94, 454, 759, 798
MwoI GCNNNNNNNGC 7 cut(s) 338, 344, 353, 506, 602, 611, 798
NciI CCSGG 1 cut(s) 590
NdeII GATC 8 cut(s) 4, 121, 324, 529, 687, 741, 825, 864
NlaIII CATG 3 cut(s) 688, 821, 957
NlaIV GGNNCC 5 cut(s) 37, 98, 140, 451, 743
NmeAIII GCCGAG 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 45
NsiI ATGCAT 2 cut(s) 466, 955
NspI RCATGY 1 cut(s) 821
PaeI GCATGC 1 cut(s) 821
PagI TCATGA 1 cut(s) 684
PaqCI CACCTGC 1 cut(s) 92
PctI GAATGC 1 cut(s) 792
PdmI GAANNNNTTC 1 cut(s) 792
PfeI GAWTC 2 cut(s) 11, 480
PflMI CCANNNNNTGG 1 cut(s) 373
PfoI TCCNGGA 1 cut(s) 757
PkrI GCNGC 4 cut(s) 334, 337, 340, 697
PleI GAGTC 1 cut(s) 540
PpsI GAGTC 1 cut(s) 540
Psp124BI GAGCTC 1 cut(s) 848
Psp6I CCWGG 4 cut(s) 92, 452, 757, 796
PspFI CCCAGC 2 cut(s) 341, 366
PspGI CCWGG 4 cut(s) 92, 452, 757, 796
PspN4I GGNNCC 5 cut(s) 37, 98, 140, 451, 743
PstNI CAGNNNCTG 2 cut(s) 202, 373
PsuI RGATCY 3 cut(s) 4, 741, 825
RsaI GTAC 4 cut(s) 71, 98, 134, 310
RsaNI GTAC 4 cut(s) 70, 97, 133, 309
SacI GAGCTC 1 cut(s) 848
SatI GCNGC 4 cut(s) 333, 336, 339, 696
Sau3AI GATC 8 cut(s) 4, 121, 324, 529, 687, 741, 825, 864
SchI GAGTC 1 cut(s) 540
ScrFI CCNGG 5 cut(s) 94, 454, 590, 759, 798
SduI GDGCHC 4 cut(s) 59, 452, 584, 848
SexAI ACCWGGT 1 cut(s) 92
SfaNI GCATC 3 cut(s) 384, 392, 451
SphI GCATGC 1 cut(s) 821
Sse9I AATT 4 cut(s) 510, 569, 753, 876
SsiI CCGC 3 cut(s) 291, 733, 849
SspMI CTAG 2 cut(s) 8, 623
SstI GAGCTC 1 cut(s) 848
StyD4I CCNGG 5 cut(s) 92, 452, 588, 757, 796
StyI CCWWGG 3 cut(s) 576, 723, 737
TaaI ACNGT 5 cut(s) 51, 192, 523, 652, 838
TaiI ACGT 1 cut(s) 111
TasI AATT 4 cut(s) 510, 569, 753, 876
TatI WGTACW 1 cut(s) 132
TfiI GAWTC 2 cut(s) 11, 480
TscAI CASTG 5 cut(s) 54, 195, 358, 528, 775
TseFI GTSAC 1 cut(s) 45
TseI GCWGC 4 cut(s) 332, 335, 338, 695
Tsp45I GTSAC 1 cut(s) 45
TspDTI ATGAA 1 cut(s) 217
TspRI CASTG 5 cut(s) 54, 195, 358, 528, 775
Van91I CCANNNNNTGG 1 cut(s) 373
XagI CCTNNNNNAGG 1 cut(s) 443
XapI RAATTY 1 cut(s) 876
XbaI TCTAGA 1 cut(s) 7
XceI RCATGY 1 cut(s) 821
XcmI CCANNNNNNNNNTGG 1 cut(s) 370
XmiI GTMKAC 1 cut(s) 518
XmnI GAANNNNTTC 1 cut(s) 792
XspI CTAG 2 cut(s) 8, 623
ZraI GACGTC 1 cut(s) 109
Zsp2I ATGCAT 2 cut(s) 466, 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.