Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002958

Physical Location & Seq

Genomic Coordinates Forward (+)

22019404 .. 22021700

Gene Structure 2297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g20540.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGGGCTTGATCTTGATCTGGAATCAATATCCGAGGCGACGTCAGGAGCCGTTCGATCACTCGTGAGCACCACTCTGCTGTACCCGCTCGACACCTGCAAAACCAGGTACCAAGCCGAAGTTCGAGGCAATGGTCAGGCCAAATACAGGAACCTTTCGGATGTGTTTTGGGAAGCAATATCCACACGCCAGGTTCTTTCACTGTATCAGGGTCTCGAAACAAAAAACCTGCAATCCTTCATTGCTCAGTTTGTTTATTTTTACGGGTATAGCTATTTCAAAAGACTATATGTGGAAACAAGTGGTGTTAAATCAATAGGGACGAGAGCAAACTTAGTCCTTGCAGCTGCTGCTGGAGCTTGCACTGCCATTTTAACTCAGCCTTTGGATACAGCCTCGTCAAGGATGCAGACAAGTGCCTTTGGAAAATCCAAAGGATTGTGGAAGACCCTTACAGATGGTAGCTGGATTGATGCATTTGATGGTCTCGGAATCTCCCTGTTGCTGACCGCAAACCCTGCAATTCAGTATACAGTGTTCGATCAGCTAAAACTCAGACTCTTGAAAGGGAAAGATAAATCGGGCAAGGGTTCATCGCCAGAAGCCCTTTCTGCCTTCACAGCATTTGTTTTAGGTGCAGTCTCGAAGACTGTTGCCACCGTTCTGACCTATCCTGCCATCAGGTGTAAGGTCATGATCCAAGCTGCTGATGAAGATGATGGAAAAACCAAAAACCCCCGGCCAAAGTCCAGCAAAACGATTCCAGCAGTCCTATGCGCTATATGGAAAAGGGAAGGGATTCTCGGCTTCTTCAAGGGATTGCATGCTCAGATCTTGAAGACCGTCCTGAGCTCGGCATTGCTTCTGATGATCAAGGAAAAGATCTCCGCTGCTACTTGGGTTCTTCTACTTTCAATCAGAAGGTCTCTATTGCTCACAAGGGGCAGACTAAAAAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005777 GO:0005778 GO:0005779 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0007275 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009056 GO:0009062 GO:0009791 GO:0009850 GO:0009987 GO:0010817 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016042 GO:0016054 GO:0019395 GO:0019752 GO:0019866 GO:0022857 GO:0030258 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032787 GO:0034220 GO:0034440 GO:0034641 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046483 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0055114 GO:0065007 GO:0065008 GO:0071702 GO:0071704 GO:0071705 GO:0072329 GO:0080024 GO:0090351 GO:0098588 GO:0098656 GO:0098805 GO:1901264 GO:1901360 GO:1901505 GO:1901564 GO:1901575 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

321

Amino Acids

34.86

Weight (kDa)

9.78

Isoelectric Point (pI)

23.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05290 AT5G27520
fragaria_vesca	FvH4_4g14900 FvH4_6g05760
malus_domestica	MD04G1205900.v1.1 MD12G1220000.v1.1 MD13G1186400.v1.1 MD16G1187100.v1.1
prunus_persica	Prupe.1G154100_v2.0.a1 Prupe.1G154100_v2.0.a1 Prupe.6G326700_v2.0.a1
pyrus_communis	pycom04g18220 pycom12g20540 pycom13g16130 pycom16g15710
rosa_chinensis	RchiOBHm_Chr3g0454671 RchiOBHm_Chr4g0417191 RchiOBHm_Chr4g0417301
rosa_laevigata	RLG00000007919 RLG00000025425
rosa_multiflora	Rmu_sc0000646.1_g000002 Rmu_sc0002129.1_g000048
rosa_roxburghii	Rroxscaffold_5G00361050 Rroxscaffold_6G00424870
rosa_rugosa	Rorug03G0001100.1 Rorug04G0146200 Rorug04G0146600
rosa_samantha	Rh3AG061000 Rh3CG061700 Rh3DG062600 Rh4AG209400 Rh4AG210200 Rh4CG220600 Rh4CG221200 Rh4DG207200 Rh4DG208200
rosa_wichuraiana	Rw3G004750 Rw4G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	104
AatII	GACGTC	1 cut(s)	44
Acc36I	ACCTGC	2 cut(s)	104, 237
Acc65I	GGTACC	1 cut(s)	108
AccB1I	GGYRCC	1 cut(s)	108
AccBSI	CCGCTC	1 cut(s)	88
AccI	GTMKAC	1 cut(s)	530
AciI	CCGC	3 cut(s)	86, 510, 888
AclWI	GGATC	1 cut(s)	691
AcoI	YGGCCR	1 cut(s)	740
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	2 cut(s)	83, 110
AfiI	CCNNNNNNNGG	3 cut(s)	147, 402, 853
AgsI	TTSAA	5 cut(s)	280, 565, 814, 838, 915
AjnI	CCWGG	2 cut(s)	104, 189
AjuI	GAANNNNNNNTTGG	2 cut(s)	105, 137
AluBI	AGCT	7 cut(s)	273, 347, 359, 465, 547, 704, 852
AluI	AGCT	7 cut(s)	273, 347, 359, 465, 547, 704, 852
Alw21I	GWGCWC	2 cut(s)	71, 854
Alw26I	GTCTC	4 cut(s)	218, 491, 646, 930
AlwI	GGATC	1 cut(s)	691
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	2 cut(s)	138, 740
ApeKI	GCWGC	5 cut(s)	344, 347, 350, 704, 890
Asp700I	GAANNNNTTC	1 cut(s)	798
Asp718I	GGTACC	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	779
AsuC2I	CCSGG	1 cut(s)	739
BanI	GGYRCC	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	854
BauI	CACGAG	1 cut(s)	62
BbsI	GAAGAC	3 cut(s)	452, 653, 845
Bbv12I	GWGCWC	2 cut(s)	71, 854
BbvI	GCAGC	5 cut(s)	334, 337, 356, 691, 877
BccI	CCATC	4 cut(s)	452, 476, 686, 713
BceAI	ACGGC	1 cut(s)	35
BciT130I	CCWGG	2 cut(s)	106, 191
BciVI	GTATCC	1 cut(s)	382
BclI	TGATCA	1 cut(s)	870
BcnI	CCSGG	1 cut(s)	739
BcoDI	GTCTC	4 cut(s)	218, 491, 646, 930
BfuAI	ACCTGC	2 cut(s)	104, 237
BfuI	GTATCC	1 cut(s)	382
BglII	AGATCT	2 cut(s)	831, 882
BisI	GCNGC	5 cut(s)	345, 348, 351, 705, 891
BlsI	GCNGC	5 cut(s)	346, 349, 352, 706, 892
Bme1390I	CCNGG	3 cut(s)	106, 191, 739
BmiI	GGNNCC	3 cut(s)	49, 110, 152
BmrFI	CCNGG	3 cut(s)	106, 191, 739
BmsI	GCATC	2 cut(s)	396, 463
BpiI	GAAGAC	3 cut(s)	452, 653, 845
BplI	GAGNNNNNCTC	2 cut(s)	58, 90
BpmI	CTGGAG	1 cut(s)	375
Bpu10I	CCTNAGC	1 cut(s)	848
BpuMI	CCSGG	1 cut(s)	739
BsaBI	GATNNNNATC	1 cut(s)	15
BsaHI	GRCGYC	1 cut(s)	41
BsaI	GGTCTC	3 cut(s)	218, 491, 930
BsaJI	CCNNGG	2 cut(s)	33, 737
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 402, 853
Bse3DI	GCAATG	3 cut(s)	136, 240, 857
Bse8I	GATNNNNATC	1 cut(s)	15
BseBI	CCWGG	2 cut(s)	106, 191
BseDI	CCNNGG	2 cut(s)	33, 737
BseGI	GGATG	2 cut(s)	166, 411
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	3 cut(s)	147, 402, 853
BseMI	GCAATG	3 cut(s)	136, 240, 857
BseMII	CTCAG	5 cut(s)	260, 392, 568, 839, 842
BseXI	GCAGC	5 cut(s)	334, 337, 356, 691, 877
BsgI	GTGCAG	1 cut(s)	657
BshFI	GGCC	2 cut(s)	140, 742
BshNI	GGYRCC	1 cut(s)	108
BsiHKAI	GWGCWC	2 cut(s)	71, 854
BsiSI	CCGG	1 cut(s)	739
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	3 cut(s)	147, 402, 853
BsmAI	GTCTC	4 cut(s)	218, 491, 646, 930
BsmFI	GGGAC	1 cut(s)	334
BsnI	GGCC	2 cut(s)	140, 742
Bso31I	GGTCTC	3 cut(s)	218, 491, 930
Bsp1286I	GDGCHC	2 cut(s)	71, 854
Bsp143I	GATC	8 cut(s)	10, 16, 56, 541, 696, 831, 870, 882
BspACI	CCGC	3 cut(s)	86, 510, 888
BspANI	GGCC	2 cut(s)	140, 742
BspCNI	CTCAG	5 cut(s)	259, 391, 567, 840, 841
BspHI	TCATGA	1 cut(s)	693
BspLI	GGNNCC	3 cut(s)	49, 110, 152
BspMI	ACCTGC	2 cut(s)	104, 237
BspPI	GGATC	1 cut(s)	691
BspT107I	GGYRCC	1 cut(s)	108
BspTNI	GGTCTC	3 cut(s)	218, 491, 930
BsrBI	CCGCTC	1 cut(s)	88
BsrDI	GCAATG	3 cut(s)	136, 240, 857
BssECI	CCNNGG	2 cut(s)	33, 737
BssMI	GATC	8 cut(s)	10, 16, 56, 541, 696, 831, 870, 882
BssNAI	GTATAC	1 cut(s)	531
BssNI	GRCGYC	1 cut(s)	41
BssSI	CACGAG	1 cut(s)	62
Bst1107I	GTATAC	1 cut(s)	531
Bst2BI	CACGAG	1 cut(s)	62
Bst2UI	CCWGG	2 cut(s)	106, 191
Bst4CI	ACNGT	5 cut(s)	204, 535, 652, 661, 844
BstACI	GRCGYC	1 cut(s)	41
BstAPI	GCANNNNNTGC	2 cut(s)	350, 518
BstC8I	GCNNGC	2 cut(s)	361, 825
BstDEI	CTNAG	6 cut(s)	246, 334, 378, 554, 828, 848
BstENI	CCTNNNNNAGG	1 cut(s)	400
BstF5I	GGATG	2 cut(s)	166, 411
BstHHI	GCGC	1 cut(s)	779
BstKTI	GATC	8 cut(s)	13, 19, 59, 544, 699, 834, 873, 885
BstMAI	GTCTC	4 cut(s)	218, 491, 646, 930
BstMBI	GATC	8 cut(s)	10, 16, 56, 541, 696, 831, 870, 882
BstMWI	GCNNNNNNNGC	7 cut(s)	85, 350, 356, 365, 518, 611, 620
BstNI	CCWGG	2 cut(s)	106, 191
BstNSI	RCATGY	1 cut(s)	827
BstSCI	CCNGG	3 cut(s)	104, 189, 737
BstV1I	GCAGC	5 cut(s)	334, 337, 356, 691, 877
BstV2I	GAAGAC	3 cut(s)	452, 653, 845
BstX2I	RGATCY	2 cut(s)	831, 882
BstYI	RGATCY	2 cut(s)	831, 882
BstZ17I	GTATAC	1 cut(s)	531
BsuI	GTATCC	1 cut(s)	382
BsuRI	GGCC	2 cut(s)	140, 742
BtgZI	GCGATG	1 cut(s)	579
BtsCI	GGATG	2 cut(s)	166, 411
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	3 cut(s)	200, 363, 540
BveI	ACCTGC	2 cut(s)	104, 237
Cac8I	GCNNGC	2 cut(s)	361, 825
CaiI	CAGNNNCTG	1 cut(s)	350
CciI	TCATGA	1 cut(s)	693
CfoI	GCGC	1 cut(s)	779
CsiI	ACCWGGT	1 cut(s)	104
Csp6I	GTAC	2 cut(s)	82, 109
CviAII	CATG	2 cut(s)	694, 824
CviQI	GTAC	2 cut(s)	82, 109
DdeI	CTNAG	6 cut(s)	246, 334, 378, 554, 828, 848
DpnI	GATC	8 cut(s)	12, 18, 58, 543, 698, 833, 872, 884
DpnII	GATC	8 cut(s)	10, 16, 56, 541, 696, 831, 870, 882
EaeI	YGGCCR	1 cut(s)	740
Ecl136II	GAGCTC	1 cut(s)	852
Eco24I	GRGCYC	1 cut(s)	854
Eco31I	GGTCTC	3 cut(s)	218, 491, 930
Eco53kI	GAGCTC	1 cut(s)	852
EcoICRI	GAGCTC	1 cut(s)	852
EcoNI	CCTNNNNNAGG	1 cut(s)	400
EcoRII	CCWGG	2 cut(s)	104, 189
EcoT22I	ATGCAT	1 cut(s)	478
EcoT38I	GRGCYC	1 cut(s)	854
FaeI	CATG	2 cut(s)	697, 827
FaiI	YATR	9 cut(s)	270, 289, 291, 531, 695, 775, 782, 784, 825
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	2 cut(s)	693, 823
FauI	CCCGC	1 cut(s)	93
FbaI	TGATCA	1 cut(s)	870
FblI	GTMKAC	1 cut(s)	530
Fnu4HI	GCNGC	5 cut(s)	345, 348, 351, 705, 891
FokI	GGATG	2 cut(s)	173, 418
FriOI	GRGCYC	1 cut(s)	854
Fsp4HI	GCNGC	5 cut(s)	345, 348, 351, 705, 891
GlaI	GCGC	1 cut(s)	778
GluI	GCNGC	5 cut(s)	345, 348, 351, 705, 891
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	2 cut(s)	140, 742
HapII	CCGG	1 cut(s)	739
HhaI	GCGC	1 cut(s)	779
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	2 cut(s)	697, 827
Hin6I	GCGC	1 cut(s)	777
HinP1I	GCGC	1 cut(s)	777
HinfI	GANTC	5 cut(s)	23, 492, 558, 760, 799
HpaII	CCGG	1 cut(s)	739
Hpy166II	GTNNAC	1 cut(s)	531
Hpy188I	TCNGA	8 cut(s)	34, 160, 491, 557, 666, 831, 867, 920
Hpy8I	GTNNAC	1 cut(s)	531
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	4 cut(s)	247, 625, 788, 915
HpyCH4III	ACNGT	5 cut(s)	204, 535, 652, 661, 844
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	9 cut(s)	99, 232, 344, 363, 409, 476, 521, 638, 823
HpyF10VI	GCNNNNNNNGC	7 cut(s)	85, 350, 356, 365, 518, 611, 620
HpyF3I	CTNAG	6 cut(s)	246, 334, 378, 554, 828, 848
HpySE526I	ACGT	1 cut(s)	41
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	697, 827
HspAI	GCGC	1 cut(s)	777
KpnI	GGTACC	1 cut(s)	112
Ksp22I	TGATCA	1 cut(s)	870
Kzo9I	GATC	8 cut(s)	10, 16, 56, 541, 696, 831, 870, 882
LmnI	GCTCC	2 cut(s)	47, 356
Lsp1109I	GCAGC	5 cut(s)	334, 337, 356, 691, 877
LweI	GCATC	2 cut(s)	396, 463
MabI	ACCWGGT	1 cut(s)	104
MaeII	ACGT	1 cut(s)	41
MalI	GATC	8 cut(s)	12, 18, 58, 543, 698, 833, 872, 884
MbiI	CCGCTC	1 cut(s)	88
MboI	GATC	8 cut(s)	10, 16, 56, 541, 696, 831, 870, 882
MboII	GAAGA	6 cut(s)	457, 658, 725, 802, 850, 896
MflI	RGATCY	2 cut(s)	831, 882
MhlI	GDGCHC	2 cut(s)	71, 854
MluCI	AATT	1 cut(s)	522
MlyI	GAGTC	1 cut(s)	552
MnlI	CCTC	3 cut(s)	28, 119, 406
Mph1103I	ATGCAT	1 cut(s)	478
MroXI	GAANNNNTTC	1 cut(s)	798
MseI	TTAA	2 cut(s)	309, 374
MspA1I	CMGCKG	2 cut(s)	347, 890
MspI	CCGG	1 cut(s)	739
MspR9I	CCNGG	3 cut(s)	106, 191, 739
MvaI	CCWGG	2 cut(s)	106, 191
MwoI	GCNNNNNNNGC	7 cut(s)	85, 350, 356, 365, 518, 611, 620
NciI	CCSGG	1 cut(s)	739
NdeII	GATC	8 cut(s)	10, 16, 56, 541, 696, 831, 870, 882
NlaIII	CATG	2 cut(s)	697, 827
NlaIV	GGNNCC	3 cut(s)	49, 110, 152
NmeAIII	GCCGAG	2 cut(s)	783, 833
NsiI	ATGCAT	1 cut(s)	478
NspI	RCATGY	1 cut(s)	827
PaeI	GCATGC	1 cut(s)	827
PagI	TCATGA	1 cut(s)	693
PaqCI	CACCTGC	1 cut(s)	104
PdmI	GAANNNNTTC	1 cut(s)	798
PfeI	GAWTC	4 cut(s)	23, 492, 760, 799
PkrI	GCNGC	5 cut(s)	346, 349, 352, 706, 892
PleI	GAGTC	1 cut(s)	552
PpsI	GAGTC	1 cut(s)	552
Psp124BI	GAGCTC	1 cut(s)	854
Psp6I	CCWGG	2 cut(s)	104, 189
PspGI	CCWGG	2 cut(s)	104, 189
PspN4I	GGNNCC	3 cut(s)	49, 110, 152
PsrI	GAACNNNNNNTAC	2 cut(s)	521, 553
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	2 cut(s)	831, 882
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	2 cut(s)	83, 110
RsaNI	GTAC	2 cut(s)	82, 109
SacI	GAGCTC	1 cut(s)	854
SaqAI	TTAA	2 cut(s)	309, 374
SatI	GCNGC	5 cut(s)	345, 348, 351, 705, 891
Sau3AI	GATC	8 cut(s)	10, 16, 56, 541, 696, 831, 870, 882
SchI	GAGTC	1 cut(s)	552
ScrFI	CCNGG	3 cut(s)	106, 191, 739
SduI	GDGCHC	2 cut(s)	71, 854
SexAI	ACCWGGT	1 cut(s)	104
SfaNI	GCATC	2 cut(s)	396, 463
SphI	GCATGC	1 cut(s)	827
Sse9I	AATT	1 cut(s)	522
SsiI	CCGC	3 cut(s)	86, 510, 888
SstI	GAGCTC	1 cut(s)	854
StyD4I	CCNGG	3 cut(s)	104, 189, 737
TaaI	ACNGT	5 cut(s)	204, 535, 652, 661, 844
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	6 cut(s)	55, 90, 124, 216, 540, 644
TasI	AATT	1 cut(s)	522
TfiI	GAWTC	4 cut(s)	23, 492, 760, 799
Tru1I	TTAA	2 cut(s)	309, 374
Tru9I	TTAA	2 cut(s)	309, 374
TscAI	CASTG	3 cut(s)	207, 370, 540
TseI	GCWGC	5 cut(s)	344, 347, 350, 704, 890
TspDTI	ATGAA	3 cut(s)	229, 582, 726
TspRI	CASTG	3 cut(s)	207, 370, 540
XagI	CCTNNNNNAGG	1 cut(s)	400
XceI	RCATGY	1 cut(s)	827
XmiI	GTMKAC	1 cut(s)	530
XmnI	GAANNNNTTC	1 cut(s)	798
ZraI	GACGTC	1 cut(s)	42
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.