Rh4AG209400

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002958
Physical Location & Seq
Forward (+)
50161723 .. 50164472
2750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG209400.1

Sequence Viewer

Length: 1020 bp
ATGGGGTTTGATCTTGAATCTGTTGCAGAGGCAACCTCAGGGGCCATTGGAGCTCTGGTCAGCACCACCATCTTGTACCCACTTGATACCTGCAAGACCAAATACCAAGCTGAAGTCCGAGCTCAGAATCCGCTAAAGTACAGGAACATTTCTGATGTTTTCTGGGAAGCAATTTCTACCCGTCAGTTTTTTTTTAAGAGGTTGTACTTGGAGAAAAGTGGAAACAAAACCATGGGTACAAAAGCAAACTTGATAGTTGCAGCAGCTGCTGGAGCTTGCACAGTCATAGTGACAATGCCATTGGATACAGCATCATCAAGGATGCAAACAAGTGAGTTTGGGAAATCCAAAGGACTTTGGAAGACCCTGTCAAAGGGAACTTGGATTGAAGCGTTTGATGGTCTTGGCATATCACTTCTTTTGACTTCTAACCCATCAATCCAGTATACGGTATTTGATCAGCTGAAGCAAAGGCTATTGATTGGGCAGCTGAGCAAAAGAACAGAAAGGGAGAAAGGGGAATATAGTTCTCAGTCACCAACTCTGCTTTCTGACCTGCCGCCAGAACAATTGGCGTTGAGTGGGTTTGGAAACCAGTTATTGTCTTTGGATGGCCGCCTACCCAACAACATCTTTTCCCACTCGAACAGGGACAGACAAGGGTTTGAGATTCTCGTCCACGGTCAACAACATTCTTGGCTGCACCGCCATAACAAGATAGTAGAGGACATAATGATACTTCCCCAAAATGATGGCTTTCATATCAAGATATACGTGCAGCATGACCAAGAGCTGCTGCTGATAGCAAGAAGCAGTCGGAATGATATGGATTTAGAGTTGATAACCCAAATGCACAAGACCTTGAGCAATGCGCACACAGAAGAGAAGGTTGGCATCTTGAAAGACTGCGCAGCATGGCAGCTATTCTGGCATTATTGGTTCCTGCACCTTAAGGAAACCACTGCAGCCATTGCTACTTCTGAATCTGCATCATGGCTAAGTCTGCTTATGTGTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

339

Amino Acids

38.18

Weight (kDa)

7.18

Isoelectric Point (pI)

42.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 82 - 159 2.2e-06 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 873, 910
Acc36I ACCTGC 2 cut(s) 98, 564
AccI GTMKAC 1 cut(s) 446
AciI CCGC 4 cut(s) 131, 560, 616, 706
AcoI YGGCCR 1 cut(s) 613
AcuI CTGAAG 2 cut(s) 132, 485
AfaI GTAC 4 cut(s) 77, 140, 206, 238
AfiI CCNNNNNNNGG 2 cut(s) 373, 448
AflII CTTAAG 1 cut(s) 950
AgsI TTSAA 3 cut(s) 17, 389, 901
AjuI GAANNNNNNNTTGG 4 cut(s) 532, 564, 873, 905
AluBI AGCT 9 cut(s) 53, 110, 122, 266, 275, 463, 490, 793, 922
AluI AGCT 9 cut(s) 53, 110, 122, 266, 275, 463, 490, 793, 922
Alw21I GWGCWC 2 cut(s) 55, 124
AlwNI CAGNNNCTG 2 cut(s) 266, 269
AoxI GGCC 2 cut(s) 42, 613
AspLEI GCGC 2 cut(s) 874, 911
AspS9I GGNCC 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 528
AxyI CCTNAGG 1 cut(s) 37
BanII GRGCYC 2 cut(s) 55, 124
BbsI GAAGAC 1 cut(s) 368
Bbv12I GWGCWC 2 cut(s) 55, 124
BccI CCATC 5 cut(s) 77, 392, 442, 605, 746
BciVI GTATCC 1 cut(s) 298
BclI TGATCA 1 cut(s) 457
BfmI CTRYAG 1 cut(s) 963
BfrI CTTAAG 1 cut(s) 950
BfuAI ACCTGC 2 cut(s) 98, 564
BfuI GTATCC 1 cut(s) 298
BlpI GCTNAGC 1 cut(s) 491
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 2 cut(s) 43, 941
BmsI GCATC 4 cut(s) 312, 320, 903, 998
BpiI GAAGAC 1 cut(s) 368
BplI GAGNNNNNCTC 2 cut(s) 20, 52
BpmI CTGGAG 1 cut(s) 291
Bpu1102I GCTNAGC 1 cut(s) 491
BpuEI CTTGAG 1 cut(s) 883
BsaAI YACGTR 1 cut(s) 775
BsaJI CCNNGG 2 cut(s) 231, 679
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bsc4I CCNNNNNNNGG 2 cut(s) 373, 448
Bse1I ACTGG 2 cut(s) 442, 595
Bse21I CCTNAGG 1 cut(s) 37
Bse3DI GCAATG 2 cut(s) 874, 969
BseDI CCNNGG 2 cut(s) 231, 679
BseGI GGATG 2 cut(s) 327, 616
BseLI CCNNNNNNNGG 2 cut(s) 373, 448
BseMI GCAATG 2 cut(s) 874, 969
BseMII CTCAG 4 cut(s) 51, 137, 482, 545
BseNI ACTGG 2 cut(s) 442, 595
BsgI GTGCAG 3 cut(s) 686, 797, 929
BshFI GGCC 2 cut(s) 44, 615
BsiHKAI GWGCWC 2 cut(s) 55, 124
BslFI GGGAC 1 cut(s) 665
BslI CCNNNNNNNGG 2 cut(s) 373, 448
BsmFI GGGAC 1 cut(s) 665
BsnI GGCC 2 cut(s) 44, 615
Bsp1286I GDGCHC 2 cut(s) 55, 124
Bsp143I GATC 2 cut(s) 10, 457
Bsp1720I GCTNAGC 1 cut(s) 491
Bsp19I CCATGG 1 cut(s) 231
BspACI CCGC 4 cut(s) 131, 560, 616, 706
BspANI GGCC 2 cut(s) 44, 615
BspCNI CTCAG 4 cut(s) 50, 136, 483, 544
BspLI GGNNCC 2 cut(s) 43, 941
BspMAI CTGCAG 1 cut(s) 967
BspMI ACCTGC 2 cut(s) 98, 564
BspTI CTTAAG 1 cut(s) 950
BsrDI GCAATG 2 cut(s) 874, 969
BsrI ACTGG 2 cut(s) 442, 595
BssECI CCNNGG 2 cut(s) 231, 679
BssMI GATC 2 cut(s) 10, 457
BssNAI GTATAC 1 cut(s) 447
BssT1I CCWWGG 1 cut(s) 231
Bst1107I GTATAC 1 cut(s) 447
Bst4CI ACNGT 3 cut(s) 283, 451, 683
Bst6I CTCTTC 1 cut(s) 876
BstAFI CTTAAG 1 cut(s) 950
BstAPI GCANNNNNTGC 2 cut(s) 266, 971
BstBAI YACGTR 1 cut(s) 775
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 5 cut(s) 37, 123, 491, 531, 998
BstDSI CCRYGG 2 cut(s) 231, 679
BstENI CCTNNNNNAGG 1 cut(s) 371
BstF5I GGATG 2 cut(s) 327, 616
BstHHI GCGC 2 cut(s) 874, 911
BstKTI GATC 2 cut(s) 13, 460
BstMBI GATC 2 cut(s) 10, 457
BstMWI GCNNNNNNNGC 6 cut(s) 50, 266, 272, 928, 971, 1003
BstSFI CTRYAG 1 cut(s) 963
BstV2I GAAGAC 1 cut(s) 368
BstXI CCANNNNNNTGG 1 cut(s) 752
BstZ17I GTATAC 1 cut(s) 447
Bsu36I CCTNAGG 1 cut(s) 37
BsuI GTATCC 1 cut(s) 298
BsuRI GGCC 2 cut(s) 44, 615
BtgI CCRYGG 2 cut(s) 231, 679
BtsCI GGATG 2 cut(s) 327, 616
BtsI GCAGTG 1 cut(s) 960
BtsIMutI CAGTG 1 cut(s) 960
BveI ACCTGC 2 cut(s) 98, 564
Cac8I GCNNGC 1 cut(s) 277
CaiI CAGNNNCTG 2 cut(s) 266, 269
CfoI GCGC 2 cut(s) 874, 911
Cfr13I GGNCC 1 cut(s) 42
Csp6I GTAC 4 cut(s) 76, 139, 205, 237
CviAII CATG 4 cut(s) 232, 782, 915, 993
CviQI GTAC 4 cut(s) 76, 139, 205, 237
DdeI CTNAG 5 cut(s) 37, 123, 491, 531, 998
DpnI GATC 2 cut(s) 12, 459
DpnII GATC 2 cut(s) 10, 457
EaeI YGGCCR 1 cut(s) 613
Eam1104I CTCTTC 1 cut(s) 876
EarI CTCTTC 1 cut(s) 876
Ecl136II GAGCTC 2 cut(s) 53, 122
Eco130I CCWWGG 1 cut(s) 231
Eco24I GRGCYC 2 cut(s) 55, 124
Eco53kI GAGCTC 2 cut(s) 53, 122
Eco57I CTGAAG 2 cut(s) 132, 485
Eco81I CCTNAGG 1 cut(s) 37
EcoICRI GAGCTC 2 cut(s) 53, 122
EcoNI CCTNNNNNAGG 1 cut(s) 371
EcoT14I CCWWGG 1 cut(s) 231
EcoT38I GRGCYC 2 cut(s) 55, 124
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 4 cut(s) 235, 785, 918, 996
FaqI GGGAC 1 cut(s) 665
FatI CATG 4 cut(s) 231, 781, 914, 992
FbaI TGATCA 1 cut(s) 457
FblI GTMKAC 1 cut(s) 446
FokI GGATG 2 cut(s) 334, 623
FriOI GRGCYC 2 cut(s) 55, 124
FspAI RTGCGCAY 1 cut(s) 873
FspI TGCGCA 2 cut(s) 873, 910
GlaI GCGC 2 cut(s) 873, 910
GsuI CTGGAG 1 cut(s) 291
HaeIII GGCC 2 cut(s) 44, 615
HhaI GCGC 2 cut(s) 874, 911
Hin1II CATG 4 cut(s) 235, 785, 918, 996
Hin6I GCGC 2 cut(s) 872, 909
HinP1I GCGC 2 cut(s) 872, 909
HincII GTYRAC 1 cut(s) 686
HindII GTYRAC 1 cut(s) 686
HinfI GANTC 4 cut(s) 17, 127, 670, 983
HphI GGTGA 1 cut(s) 528
Hpy166II GTNNAC 3 cut(s) 447, 679, 686
Hpy188I TCNGA 6 cut(s) 119, 126, 154, 553, 819, 982
Hpy188III TCNNGA 3 cut(s) 14, 766, 898
Hpy8I GTNNAC 3 cut(s) 447, 679, 686
HpyAV CCTTC 1 cut(s) 880
HpyCH4III ACNGT 3 cut(s) 283, 451, 683
HpyCH4IV ACGT 1 cut(s) 774
HpyF10VI GCNNNNNNNGC 6 cut(s) 50, 266, 272, 928, 971, 1003
HpyF3I CTNAG 5 cut(s) 37, 123, 491, 531, 998
HpySE526I ACGT 1 cut(s) 774
Hsp92II CATG 4 cut(s) 235, 785, 918, 996
HspAI GCGC 2 cut(s) 872, 909
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 2 cut(s) 10, 457
LmnI GCTCC 2 cut(s) 50, 272
LweI GCATC 4 cut(s) 312, 320, 903, 998
MaeII ACGT 1 cut(s) 774
MaeIII GTNAC 2 cut(s) 289, 534
MalI GATC 2 cut(s) 12, 459
MboI GATC 2 cut(s) 10, 457
MboII GAAGA 2 cut(s) 373, 893
MfeI CAATTG 1 cut(s) 569
MhlI GDGCHC 2 cut(s) 55, 124
MluCI AATT 2 cut(s) 171, 569
MmeI TCCRAC 1 cut(s) 797
MnlI CCTC 4 cut(s) 22, 46, 192, 718
MseI TTAA 2 cut(s) 195, 951
MspA1I CMGCKG 3 cut(s) 266, 463, 490
MspCI CTTAAG 1 cut(s) 950
MunI CAATTG 1 cut(s) 569
MwoI GCNNNNNNNGC 6 cut(s) 50, 266, 272, 928, 971, 1003
NcoI CCATGG 1 cut(s) 231
NdeII GATC 2 cut(s) 10, 457
NlaIII CATG 4 cut(s) 235, 785, 918, 996
NlaIV GGNNCC 2 cut(s) 43, 941
NmuCI GTSAC 2 cut(s) 289, 534
NsbI TGCGCA 2 cut(s) 873, 910
PfeI GAWTC 4 cut(s) 17, 127, 670, 983
PflFI GACNNNGTC 1 cut(s) 367
Ppu21I YACGTR 1 cut(s) 775
Psp124BI GAGCTC 2 cut(s) 55, 124
PspN4I GGNNCC 2 cut(s) 43, 941
PspPI GGNCC 1 cut(s) 42
PstI CTGCAG 1 cut(s) 967
PstNI CAGNNNCTG 2 cut(s) 266, 269
PsyI GACNNNGTC 1 cut(s) 367
PvuII CAGCTG 3 cut(s) 266, 463, 490
RsaI GTAC 4 cut(s) 77, 140, 206, 238
RsaNI GTAC 4 cut(s) 76, 139, 205, 237
SacI GAGCTC 2 cut(s) 55, 124
SaqAI TTAA 2 cut(s) 195, 951
Sau3AI GATC 2 cut(s) 10, 457
Sau96I GGNCC 1 cut(s) 42
SduI GDGCHC 2 cut(s) 55, 124
SfaNI GCATC 4 cut(s) 312, 320, 903, 998
SfcI CTRYAG 1 cut(s) 963
SmlI CTYRAG 2 cut(s) 862, 950
SmoI CTYRAG 2 cut(s) 862, 950
Sse9I AATT 2 cut(s) 171, 569
SsiI CCGC 4 cut(s) 131, 560, 616, 706
SstI GAGCTC 2 cut(s) 55, 124
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 3 cut(s) 283, 451, 683
TaiI ACGT 1 cut(s) 777
TaqI TCGA 1 cut(s) 644
TasI AATT 2 cut(s) 171, 569
TatI WGTACW 2 cut(s) 138, 204
TauI GCSGC 2 cut(s) 562, 618
TfiI GAWTC 4 cut(s) 17, 127, 670, 983
Tru1I TTAA 2 cut(s) 195, 951
Tru9I TTAA 2 cut(s) 195, 951
TscAI CASTG 1 cut(s) 967
TseFI GTSAC 2 cut(s) 289, 534
Tsp45I GTSAC 2 cut(s) 289, 534
TspDTI ATGAA 1 cut(s) 749
TspRI CASTG 1 cut(s) 967
Tth111I GACNNNGTC 1 cut(s) 367
Vha464I CTTAAG 1 cut(s) 950
XagI CCTNNNNNAGG 1 cut(s) 371
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.