Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002958

Physical Location & Seq

Genomic Coordinates Forward (+)

28693010 .. 28696012

Gene Structure 3003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G326700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGGAGTTGATCTTGATCTAGAATCTATATCAGAGGCAACTTCAGGAGCCATTGGATCACTCCTGAGCACCACCATCTTGTACCCACTTGACACATGCAAAACCAGGTACCAAGCTGAAGTTCGAGGCAATGATCAGGCCAGATACAAGAACCTTTCAGATGTTTTCTGGGAAGCAATATCCACACGCCAGGTTCTTTCGCTGTATCAGGGTCTGGAAACAAAAAACCTGCAATCTTTCATTGCTCAGTTTGTTTACTTTTATGGGTATAGCTACTTCAAAAGACTATATCTGGAAACAAGTGGTTCTAAATCAATAGGTACAAGAGCGAACTTGATCCTTGCTGCTGCTGCCGGGGCTTGCACTGCAATTGTGACTCAGCCTCTGGACACAGCCTCATCAAGGATGCAGACAAGTGCCTTTGGAAAATCCAAAGGGCTGTTGAAGACCCTTGCAGAGGGCACCTGGATTGATGCATTTGATGGTCTTGGAATCTCCCTGTTGCTAACCGCGAACCCTGCAATCCAGTATACAGTGTTTGATCAGCTAAAACAACGACTTCTTGAAAGGAAAAACAAAACGGGCAACGGTTCATCCCCAGTAGCCCTTTCTGCCCTTGCAGCATTTGCTTTGGGCGCGGTCTCAAAGACTGTGGCCACTGTTCTAACCTACCCTGCCATTAGGTGTAAGGTCATGATCCAAGCTGCTGAGGACGATAATGAAAAAACCAAGAATGCTCGACCTAAGTCCAGCAAAACGATACCAGGAGTTCTATGTGCCATATGGAAAAAGGAAGGGATTCTGGGCTTCTTCAAGGGATTGCATGCTCAGATATTGAAGACTGTCCTCAGCTCGGCATTGCTTTTGATGATCAAGGAAAAACTTTCAGCTGCTACTTGGGTTCTTTTACTTTCAATCAGAAGGTATCTATTGCTTACAAGGGGCAGACTAAAAGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005777 GO:0005778 GO:0005779 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0007275 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009056 GO:0009062 GO:0009791 GO:0009850 GO:0009987 GO:0010817 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016042 GO:0016054 GO:0019395 GO:0019752 GO:0019866 GO:0022857 GO:0030258 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032787 GO:0034220 GO:0034440 GO:0034641 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046483 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0055114 GO:0065007 GO:0065008 GO:0071702 GO:0071704 GO:0071705 GO:0072329 GO:0080024 GO:0090351 GO:0098588 GO:0098656 GO:0098805 GO:1901264 GO:1901360 GO:1901505 GO:1901564 GO:1901575 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

321

Amino Acids

34.86

Weight (kDa)

9.63

Isoelectric Point (pI)

20.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05290 AT5G27520
fragaria_vesca	FvH4_4g14900 FvH4_6g05760
malus_domestica	MD04G1205900.v1.1 MD12G1220000.v1.1 MD13G1186400.v1.1 MD16G1187100.v1.1
prunus_persica	Prupe.1G154100_v2.0.a1 Prupe.1G154100_v2.0.a1 Prupe.6G326700_v2.0.a1
pyrus_communis	pycom04g18220 pycom12g20540 pycom13g16130 pycom16g15710
rosa_chinensis	RchiOBHm_Chr3g0454671 RchiOBHm_Chr4g0417191 RchiOBHm_Chr4g0417301
rosa_laevigata	RLG00000007919 RLG00000025425
rosa_multiflora	Rmu_sc0000646.1_g000002 Rmu_sc0002129.1_g000048
rosa_roxburghii	Rroxscaffold_5G00361050 Rroxscaffold_6G00424870
rosa_rugosa	Rorug03G0001100.1 Rorug04G0146200 Rorug04G0146600
rosa_samantha	Rh3AG061000 Rh3CG061700 Rh3DG062600 Rh4AG209400 Rh4AG210200 Rh4CG220600 Rh4CG221200 Rh4DG207200 Rh4DG208200
rosa_wichuraiana	Rw3G004750 Rw4G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	237
Acc65I	GGTACC	1 cut(s)	108
AccB1I	GGYRCC	2 cut(s)	108, 461
AccI	GTMKAC	1 cut(s)	530
AccII	CGCG	2 cut(s)	512, 638
AciI	CCGC	2 cut(s)	510, 638
AclWI	GGATC	3 cut(s)	64, 331, 691
AcoI	YGGCCR	1 cut(s)	654
AcuI	CTGAAG	2 cut(s)	27, 138
AfaI	GTAC	3 cut(s)	83, 110, 322
AfiI	CCNNNNNNNGG	3 cut(s)	402, 457, 853
AgsI	TTSAA	6 cut(s)	280, 445, 566, 814, 838, 915
AjnI	CCWGG	4 cut(s)	104, 189, 464, 763
AjuI	GAANNNNNNNTTGG	2 cut(s)	105, 137
AluBI	AGCT	6 cut(s)	116, 273, 547, 704, 852, 890
AluI	AGCT	6 cut(s)	116, 273, 547, 704, 852, 890
Alw21I	GWGCWC	1 cut(s)	71
Alw26I	GTCTC	1 cut(s)	646
AlwI	GGATC	3 cut(s)	64, 331, 691
AlwNI	CAGNNNCTG	2 cut(s)	214, 385
AoxI	GGCC	2 cut(s)	138, 654
ApeKI	GCWGC	6 cut(s)	344, 347, 350, 620, 704, 890
Asp700I	GAANNNNTTC	1 cut(s)	798
Asp718I	GGTACC	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	638
AsuC2I	CCSGG	1 cut(s)	355
BaeGI	GKGCMC	1 cut(s)	464
BalI	TGGCCA	1 cut(s)	656
BanI	GGYRCC	2 cut(s)	108, 461
BarI	GAAGNNNNNNTAC	2 cut(s)	260, 292
BbsI	GAAGAC	2 cut(s)	452, 845
Bbv12I	GWGCWC	1 cut(s)	71
BbvCI	CCTCAGC	2 cut(s)	708, 848
BbvI	GCAGC	6 cut(s)	331, 334, 337, 632, 691, 877
BccI	CCATC	2 cut(s)	83, 476
BciT130I	CCWGG	4 cut(s)	106, 191, 466, 765
BclI	TGATCA	3 cut(s)	133, 541, 870
BcnI	CCSGG	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	646
BfaI	CTAG	1 cut(s)	20
BfuAI	ACCTGC	1 cut(s)	237
BisI	GCNGC	6 cut(s)	345, 348, 351, 621, 705, 891
BlsI	GCNGC	6 cut(s)	346, 349, 352, 622, 706, 892
Bme1390I	CCNGG	5 cut(s)	106, 191, 355, 466, 765
BmiI	GGNNCC	3 cut(s)	49, 110, 463
BmrFI	CCNGG	5 cut(s)	106, 191, 355, 466, 765
BmrI	ACTGGG	1 cut(s)	593
BmsI	GCATC	3 cut(s)	396, 463, 946
BmuI	ACTGGG	1 cut(s)	593
BoxI	GACNNNNGTC	1 cut(s)	745
BpiI	GAAGAC	2 cut(s)	452, 845
Bpu10I	CCTNAGC	3 cut(s)	65, 708, 848
BpuMI	CCSGG	1 cut(s)	355
BsaBI	GATNNNNATC	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	646
BsaJI	CCNNGG	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	3 cut(s)	402, 457, 853
Bse1I	ACTGG	2 cut(s)	526, 599
Bse3DI	GCAATG	3 cut(s)	136, 240, 857
Bse8I	GATNNNNATC	1 cut(s)	15
BseBI	CCWGG	4 cut(s)	106, 191, 466, 765
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	2 cut(s)	411, 593
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	3 cut(s)	402, 457, 853
BseMI	GCAATG	3 cut(s)	136, 240, 857
BseMII	CTCAG	6 cut(s)	56, 260, 392, 699, 842, 862
BseNI	ACTGG	2 cut(s)	526, 599
BseSI	GKGCMC	1 cut(s)	464
BseXI	GCAGC	6 cut(s)	331, 334, 337, 632, 691, 877
Bsh1236I	CGCG	2 cut(s)	512, 638
BshFI	GGCC	2 cut(s)	140, 656
BshNI	GGYRCC	2 cut(s)	108, 461
BsiHKAI	GWGCWC	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	354
BslI	CCNNNNNNNGG	3 cut(s)	402, 457, 853
BsmAI	GTCTC	1 cut(s)	646
BsmI	GAATGC	1 cut(s)	739
BsnI	GGCC	2 cut(s)	140, 656
Bso31I	GGTCTC	1 cut(s)	646
Bsp1286I	GDGCHC	2 cut(s)	71, 464
Bsp143I	GATC	8 cut(s)	10, 16, 56, 133, 336, 541, 696, 870
BspACI	CCGC	2 cut(s)	510, 638
BspANI	GGCC	2 cut(s)	140, 656
BspCNI	CTCAG	6 cut(s)	57, 259, 391, 700, 841, 861
BspFNI	CGCG	2 cut(s)	512, 638
BspHI	TCATGA	1 cut(s)	693
BspLI	GGNNCC	3 cut(s)	49, 110, 463
BspMI	ACCTGC	1 cut(s)	237
BspPI	GGATC	3 cut(s)	64, 331, 691
BspT107I	GGYRCC	2 cut(s)	108, 461
BspTNI	GGTCTC	1 cut(s)	646
BsrDI	GCAATG	3 cut(s)	136, 240, 857
BsrI	ACTGG	2 cut(s)	526, 599
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	8 cut(s)	10, 16, 56, 133, 336, 541, 696, 870
BssNAI	GTATAC	1 cut(s)	531
Bst1107I	GTATAC	1 cut(s)	531
Bst2UI	CCWGG	4 cut(s)	106, 191, 466, 765
Bst4CI	ACNGT	5 cut(s)	535, 590, 652, 661, 844
BstAPI	GCANNNNNTGC	1 cut(s)	626
BstC8I	GCNNGC	2 cut(s)	361, 825
BstDEI	CTNAG	7 cut(s)	65, 246, 378, 708, 744, 828, 848
BstENI	CCTNNNNNAGG	2 cut(s)	400, 455
BstF5I	GGATG	2 cut(s)	411, 593
BstFNI	CGCG	2 cut(s)	512, 638
BstHHI	GCGC	1 cut(s)	638
BstKTI	GATC	8 cut(s)	13, 19, 59, 136, 339, 544, 699, 873
BstMAI	GTCTC	1 cut(s)	646
BstMBI	GATC	8 cut(s)	10, 16, 56, 133, 336, 541, 696, 870
BstMWI	GCNNNNNNNGC	8 cut(s)	350, 356, 365, 518, 611, 620, 626, 635
BstNI	CCWGG	4 cut(s)	106, 191, 466, 765
BstNSI	RCATGY	2 cut(s)	99, 827
BstPAI	GACNNNNGTC	1 cut(s)	745
BstSCI	CCNGG	5 cut(s)	104, 189, 353, 464, 763
BstSLI	GKGCMC	1 cut(s)	464
BstUI	CGCG	2 cut(s)	512, 638
BstV1I	GCAGC	6 cut(s)	331, 334, 337, 632, 691, 877
BstV2I	GAAGAC	2 cut(s)	452, 845
BstZ17I	GTATAC	1 cut(s)	531
BsuRI	GGCC	2 cut(s)	140, 656
BtsCI	GGATG	2 cut(s)	411, 593
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	3 cut(s)	363, 540, 657
BveI	ACCTGC	1 cut(s)	237
Cac8I	GCNNGC	2 cut(s)	361, 825
CaiI	CAGNNNCTG	2 cut(s)	214, 385
CciI	TCATGA	1 cut(s)	693
CfoI	GCGC	1 cut(s)	638
CsiI	ACCWGGT	1 cut(s)	104
Csp6I	GTAC	3 cut(s)	82, 109, 321
CspCI	CAANNNNNGTGG	2 cut(s)	633, 668
CviAII	CATG	3 cut(s)	96, 694, 824
CviQI	GTAC	3 cut(s)	82, 109, 321
DdeI	CTNAG	7 cut(s)	65, 246, 378, 708, 744, 828, 848
DpnI	GATC	8 cut(s)	12, 18, 58, 135, 338, 543, 698, 872
DpnII	GATC	8 cut(s)	10, 16, 56, 133, 336, 541, 696, 870
EaeI	YGGCCR	1 cut(s)	654
Eco31I	GGTCTC	1 cut(s)	646
Eco57I	CTGAAG	2 cut(s)	27, 138
EcoNI	CCTNNNNNAGG	2 cut(s)	400, 455
EcoRII	CCWGG	4 cut(s)	104, 189, 464, 763
EcoT22I	ATGCAT	1 cut(s)	478
FaeI	CATG	3 cut(s)	99, 697, 827
FatI	CATG	3 cut(s)	95, 693, 823
FauNDI	CATATG	1 cut(s)	782
FbaI	TGATCA	3 cut(s)	133, 541, 870
FblI	GTMKAC	1 cut(s)	530
Fnu4HI	GCNGC	6 cut(s)	345, 348, 351, 621, 705, 891
FokI	GGATG	2 cut(s)	418, 580
Fsp4HI	GCNGC	6 cut(s)	345, 348, 351, 621, 705, 891
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	1 cut(s)	637
GluI	GCNGC	6 cut(s)	345, 348, 351, 621, 705, 891
HaeIII	GGCC	2 cut(s)	140, 656
HapII	CCGG	1 cut(s)	354
HhaI	GCGC	1 cut(s)	638
Hin1II	CATG	3 cut(s)	99, 697, 827
Hin6I	GCGC	1 cut(s)	636
HinP1I	GCGC	1 cut(s)	636
HinfI	GANTC	4 cut(s)	23, 376, 492, 799
HpaII	CCGG	1 cut(s)	354
Hpy166II	GTNNAC	2 cut(s)	256, 531
Hpy188I	TCNGA	4 cut(s)	34, 160, 831, 920
Hpy188III	TCNNGA	9 cut(s)	14, 20, 45, 64, 215, 293, 386, 563, 694
Hpy8I	GTNNAC	2 cut(s)	256, 531
HpyAV	CCTTC	2 cut(s)	788, 915
HpyCH4III	ACNGT	5 cut(s)	535, 590, 652, 661, 844
HpyF10VI	GCNNNNNNNGC	8 cut(s)	350, 356, 365, 518, 611, 620, 626, 635
HpyF3I	CTNAG	7 cut(s)	65, 246, 378, 708, 744, 828, 848
Hsp92II	CATG	3 cut(s)	99, 697, 827
HspAI	GCGC	1 cut(s)	636
KpnI	GGTACC	1 cut(s)	112
Ksp22I	TGATCA	3 cut(s)	133, 541, 870
Kzo9I	GATC	8 cut(s)	10, 16, 56, 133, 336, 541, 696, 870
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	6 cut(s)	331, 334, 337, 632, 691, 877
LweI	GCATC	3 cut(s)	396, 463, 946
MabI	ACCWGGT	1 cut(s)	104
MaeI	CTAG	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	8 cut(s)	12, 18, 58, 135, 338, 543, 698, 872
MboI	GATC	8 cut(s)	10, 16, 56, 133, 336, 541, 696, 870
MboII	GAAGA	3 cut(s)	457, 802, 850
MfeI	CAATTG	1 cut(s)	369
MhlI	GDGCHC	2 cut(s)	71, 464
MlsI	TGGCCA	1 cut(s)	656
MluCI	AATT	1 cut(s)	369
MluNI	TGGCCA	1 cut(s)	656
MlyI	GAGTC	1 cut(s)	370
MnlI	CCTC	7 cut(s)	28, 119, 393, 406, 451, 703, 857
Mox20I	TGGCCA	1 cut(s)	656
Mph1103I	ATGCAT	1 cut(s)	478
MroXI	GAANNNNTTC	1 cut(s)	798
MscI	TGGCCA	1 cut(s)	656
Msp20I	TGGCCA	1 cut(s)	656
MspA1I	CMGCKG	1 cut(s)	890
MspI	CCGG	1 cut(s)	354
MspR9I	CCNGG	5 cut(s)	106, 191, 355, 466, 765
MunI	CAATTG	1 cut(s)	369
Mva1269I	GAATGC	1 cut(s)	739
MvaI	CCWGG	4 cut(s)	106, 191, 466, 765
MvnI	CGCG	2 cut(s)	512, 638
MwoI	GCNNNNNNNGC	8 cut(s)	350, 356, 365, 518, 611, 620, 626, 635
NciI	CCSGG	1 cut(s)	355
NdeI	CATATG	1 cut(s)	782
NdeII	GATC	8 cut(s)	10, 16, 56, 133, 336, 541, 696, 870
NlaIII	CATG	3 cut(s)	99, 697, 827
NlaIV	GGNNCC	3 cut(s)	49, 110, 463
NmeAIII	GCCGAG	1 cut(s)	833
NmuCI	GTSAC	1 cut(s)	373
NsiI	ATGCAT	1 cut(s)	478
NspI	RCATGY	2 cut(s)	99, 827
PaeI	GCATGC	1 cut(s)	827
PagI	TCATGA	1 cut(s)	693
PctI	GAATGC	1 cut(s)	739
PdmI	GAANNNNTTC	1 cut(s)	798
PfeI	GAWTC	3 cut(s)	23, 492, 799
PkrI	GCNGC	6 cut(s)	346, 349, 352, 622, 706, 892
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
PshAI	GACNNNNGTC	1 cut(s)	745
Psp6I	CCWGG	4 cut(s)	104, 189, 464, 763
PspGI	CCWGG	4 cut(s)	104, 189, 464, 763
PspN4I	GGNNCC	3 cut(s)	49, 110, 463
PstNI	CAGNNNCTG	2 cut(s)	214, 385
PvuII	CAGCTG	1 cut(s)	890
RsaI	GTAC	3 cut(s)	83, 110, 322
RsaNI	GTAC	3 cut(s)	82, 109, 321
SatI	GCNGC	6 cut(s)	345, 348, 351, 621, 705, 891
Sau3AI	GATC	8 cut(s)	10, 16, 56, 133, 336, 541, 696, 870
SchI	GAGTC	1 cut(s)	370
ScrFI	CCNGG	5 cut(s)	106, 191, 355, 466, 765
SduI	GDGCHC	2 cut(s)	71, 464
SexAI	ACCWGGT	1 cut(s)	104
SfaNI	GCATC	3 cut(s)	396, 463, 946
SphI	GCATGC	1 cut(s)	827
Sse9I	AATT	1 cut(s)	369
SsiI	CCGC	2 cut(s)	510, 638
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	5 cut(s)	104, 189, 353, 464, 763
TaaI	ACNGT	5 cut(s)	535, 590, 652, 661, 844
TaqI	TCGA	2 cut(s)	124, 739
TasI	AATT	1 cut(s)	369
TfiI	GAWTC	3 cut(s)	23, 492, 799
TscAI	CASTG	3 cut(s)	370, 540, 664
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	6 cut(s)	344, 347, 350, 620, 704, 890
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	3 cut(s)	229, 582, 735
TspRI	CASTG	3 cut(s)	370, 540, 664
XagI	CCTNNNNNAGG	2 cut(s)	400, 455
XbaI	TCTAGA	1 cut(s)	19
XceI	RCATGY	2 cut(s)	99, 827
XmiI	GTMKAC	1 cut(s)	530
XmnI	GAANNNNTTC	1 cut(s)	798
XspI	CTAG	1 cut(s)	20
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.