Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002958

Physical Location & Seq

Genomic Coordinates Reverse (-)

12124644 .. 12128185

Gene Structure 3542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G154100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGCTTTGATCTTGAATCTGTAGCAGAGGCAACATCAGGGGCCATTGGAGCTTTGGTTAGCACCACCATCTTGTACCCACTTGATACCTGCAAGACCAAGTATCAAGCTGAAGTCCGAGCTCACCATCAGCAGAAGTACAGGAACATTTCTGATGTTTTATGGGAAGCAATTTCTACCCGTCAGGTGCTTTCTTTATACCAGGGCCTTGGGACAAAGAACTTCCAGTCCTTTATTTCACAGTTCATGTACTTCTATGGATACAGTTTTTTTAAGAGGTTATACTTGGAGAAAAGTGGAAATAAAACCATGGGAACTAAAGCAAACTTGATAATTGCAGCCGCTGCCGGGGCTTGCACAGTGATAGTGACACAGCCCTTGGATACAGCATCCTCAAAGATGCAGACAAGTGAGTTTGGGAAATCCAAAGGACTCTGGAAGACTCTTTCAGAGGGAACTTGGACTGAGGCATTTGACGGTCTTGGTATATCTCTTCTTTTGACATCTAACCCATCTATCCAGTACACTGTATTTGATCAGCTGAAACAAAGACTGTTGAGGGGGCAGCTGAGCAAAAGAACAGGTACAGAGTCATCTCCAGAAGCTCTTTCTGCCTTCTCTGCTTTTGTATTGGGTGCTGTCTCAAAGTGTATTGCATCCTGCTTGACTTACCCAGCCATCAGGTGCAAGGTCATGATTCAAGCAGCAGAAGAAGATGAAGAAGGTAACAAGGAAGCTCAAAACGGATCGAAAAAATCCAAAAAGACAATTTCAGGTGCATTTTTTGCCATTTGGAAAAAAGAGGGTCTATTGGGTTTCTTCAAGGGATTACAGGCCCAGATACTAAAAACTGTGCTAAGCTCGGCATTGCTTTTGATGATAAAGGAAAAGATCACAAAGACCACCTGGGTCCTATTGCTTGCTCTGAGGAGGTTTTTTTTCCTCAACAAGAGCAGATTAAAGAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

324

Amino Acids

35.69

Weight (kDa)

9.63

Isoelectric Point (pI)

33.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05290 AT5G27520
fragaria_vesca	FvH4_4g14900 FvH4_6g05760
malus_domestica	MD04G1205900.v1.1 MD12G1220000.v1.1 MD13G1186400.v1.1 MD16G1187100.v1.1
prunus_persica	Prupe.1G154100_v2.0.a1 Prupe.1G154100_v2.0.a1 Prupe.6G326700_v2.0.a1
pyrus_communis	pycom04g18220 pycom12g20540 pycom13g16130 pycom16g15710
rosa_chinensis	RchiOBHm_Chr3g0454671 RchiOBHm_Chr4g0417191 RchiOBHm_Chr4g0417301
rosa_laevigata	RLG00000007919 RLG00000025425
rosa_multiflora	Rmu_sc0000646.1_g000002 Rmu_sc0002129.1_g000048
rosa_roxburghii	Rroxscaffold_5G00361050 Rroxscaffold_6G00424870
rosa_rugosa	Rorug03G0001100.1 Rorug04G0146200 Rorug04G0146600
rosa_samantha	Rh3AG061000 Rh3CG061700 Rh3DG062600 Rh4AG209400 Rh4AG210200 Rh4CG220600 Rh4CG221200 Rh4DG207200 Rh4DG208200
rosa_wichuraiana	Rw3G004750 Rw4G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	98
AciI	CCGC	1 cut(s)	342
AclWI	GGATC	1 cut(s)	754
AcuI	CTGAAG	1 cut(s)	132
AfaI	GTAC	5 cut(s)	77, 140, 251, 524, 586
AfiI	CCNNNNNNNGG	1 cut(s)	348
AgsI	TTSAA	3 cut(s)	17, 701, 823
AjnI	CCWGG	2 cut(s)	201, 905
AloI	GAACNNNNNNTCC	2 cut(s)	212, 244
AluBI	AGCT	8 cut(s)	53, 110, 122, 541, 568, 605, 737, 861
AluI	AGCT	8 cut(s)	53, 110, 122, 541, 568, 605, 737, 861
Alw21I	GWGCWC	1 cut(s)	124
Alw26I	GTCTC	1 cut(s)	646
AlwI	GGATC	1 cut(s)	754
AlwNI	CAGNNNCTG	1 cut(s)	344
AoxI	GGCC	3 cut(s)	42, 205, 834
ApeKI	GCWGC	4 cut(s)	338, 344, 565, 704
AspS9I	GGNCC	4 cut(s)	42, 205, 835, 910
AsuC2I	CCSGG	1 cut(s)	349
AsuHPI	GGTGA	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	910
BanII	GRGCYC	1 cut(s)	124
BbsI	GAAGAC	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	4 cut(s)	331, 350, 577, 716
BccI	CCATC	4 cut(s)	77, 135, 520, 686
BciT130I	CCWGG	2 cut(s)	203, 907
BciVI	GTATCC	2 cut(s)	254, 376
BclI	TGATCA	1 cut(s)	535
BcnI	CCSGG	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	646
BfmI	CTRYAG	1 cut(s)	21
BfuAI	ACCTGC	1 cut(s)	98
BfuI	GTATCC	2 cut(s)	254, 376
BisI	GCNGC	5 cut(s)	339, 342, 345, 566, 705
BlpI	GCTNAGC	2 cut(s)	569, 857
BlsI	GCNGC	5 cut(s)	340, 343, 346, 567, 706
Bme1390I	CCNGG	3 cut(s)	203, 349, 907
Bme18I	GGWCC	1 cut(s)	910
BmgT120I	GGNCC	4 cut(s)	42, 205, 835, 910
BmiI	GGNNCC	2 cut(s)	43, 911
BmrFI	CCNGG	3 cut(s)	203, 349, 907
BmsI	GCATC	3 cut(s)	390, 398, 665
BpiI	GAAGAC	1 cut(s)	446
BpmI	CTGGAG	1 cut(s)	582
Bpu1102I	GCTNAGC	2 cut(s)	569, 857
BpuMI	CCSGG	1 cut(s)	349
BsaJI	CCNNGG	6 cut(s)	202, 208, 309, 348, 378, 906
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse1I	ACTGG	2 cut(s)	226, 520
Bse3DI	GCAATG	1 cut(s)	866
BseBI	CCWGG	2 cut(s)	203, 907
BseDI	CCNNGG	6 cut(s)	202, 208, 309, 348, 378, 906
BseGI	GGATG	2 cut(s)	389, 656
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseMI	GCAATG	1 cut(s)	866
BseMII	CTCAG	3 cut(s)	456, 560, 917
BseNI	ACTGG	2 cut(s)	226, 520
BseRI	GAGGAG	1 cut(s)	943
BseXI	GCAGC	4 cut(s)	331, 350, 577, 716
BseYI	CCCAGC	1 cut(s)	673
BshFI	GGCC	3 cut(s)	44, 207, 836
BsiHKAI	GWGCWC	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	348
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	348
BsmAI	GTCTC	1 cut(s)	646
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	3 cut(s)	44, 207, 836
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	4 cut(s)	10, 535, 746, 891
Bsp1720I	GCTNAGC	2 cut(s)	569, 857
Bsp19I	CCATGG	1 cut(s)	309
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	3 cut(s)	44, 207, 836
BspCNI	CTCAG	3 cut(s)	457, 561, 918
BspHI	TCATGA	1 cut(s)	693
BspLI	GGNNCC	2 cut(s)	43, 911
BspMI	ACCTGC	1 cut(s)	98
BspPI	GGATC	1 cut(s)	754
BsrDI	GCAATG	1 cut(s)	866
BsrI	ACTGG	2 cut(s)	226, 520
BssECI	CCNNGG	6 cut(s)	202, 208, 309, 348, 378, 906
BssMI	GATC	4 cut(s)	10, 535, 746, 891
BssT1I	CCWWGG	3 cut(s)	208, 309, 378
Bst2UI	CCWGG	2 cut(s)	203, 907
Bst4CI	ACNGT	7 cut(s)	243, 266, 361, 479, 529, 555, 853
Bst6I	CTCTTC	1 cut(s)	498
BstAPI	GCANNNNNTGC	2 cut(s)	344, 785
BstC8I	GCNNGC	2 cut(s)	355, 921
BstDEI	CTNAG	4 cut(s)	465, 569, 857, 926
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	2 cut(s)	389, 656
BstKTI	GATC	4 cut(s)	13, 538, 749, 894
BstMAI	GTCTC	1 cut(s)	646
BstMBI	GATC	4 cut(s)	10, 535, 746, 891
BstMWI	GCNNNNNNNGC	6 cut(s)	50, 344, 350, 611, 620, 785
BstNI	CCWGG	2 cut(s)	203, 907
BstSCI	CCNGG	3 cut(s)	201, 347, 905
BstSFI	CTRYAG	1 cut(s)	21
BstV1I	GCAGC	4 cut(s)	331, 350, 577, 716
BstV2I	GAAGAC	1 cut(s)	446
BstXI	CCANNNNNNTGG	1 cut(s)	209
BsuI	GTATCC	2 cut(s)	254, 376
BsuRI	GGCC	3 cut(s)	44, 207, 836
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	389, 656
BtsIMutI	CAGTG	2 cut(s)	366, 525
BveI	ACCTGC	1 cut(s)	98
Cac8I	GCNNGC	2 cut(s)	355, 921
CaiI	CAGNNNCTG	1 cut(s)	344
CciI	TCATGA	1 cut(s)	693
Cfr13I	GGNCC	4 cut(s)	42, 205, 835, 910
Csp6I	GTAC	5 cut(s)	76, 139, 250, 523, 585
CviAII	CATG	3 cut(s)	247, 310, 694
CviQI	GTAC	5 cut(s)	76, 139, 250, 523, 585
DdeI	CTNAG	4 cut(s)	465, 569, 857, 926
DpnI	GATC	4 cut(s)	12, 537, 748, 893
DpnII	GATC	4 cut(s)	10, 535, 746, 891
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Ecl136II	GAGCTC	1 cut(s)	122
Eco130I	CCWWGG	3 cut(s)	208, 309, 378
Eco24I	GRGCYC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	910
Eco53kI	GAGCTC	1 cut(s)	122
Eco57I	CTGAAG	1 cut(s)	132
EcoICRI	GAGCTC	1 cut(s)	122
EcoO109I	RGGNCCY	2 cut(s)	205, 910
EcoRII	CCWGG	2 cut(s)	201, 905
EcoT14I	CCWWGG	3 cut(s)	208, 309, 378
EcoT38I	GRGCYC	1 cut(s)	124
ErhI	CCWWGG	3 cut(s)	208, 309, 378
FaeI	CATG	3 cut(s)	250, 313, 697
FaiI	YATR	8 cut(s)	163, 199, 248, 258, 283, 311, 488, 695
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	3 cut(s)	246, 309, 693
FbaI	TGATCA	1 cut(s)	535
Fnu4HI	GCNGC	5 cut(s)	339, 342, 345, 566, 705
FokI	GGATG	2 cut(s)	376, 643
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	5 cut(s)	339, 342, 345, 566, 705
GluI	GCNGC	5 cut(s)	339, 342, 345, 566, 705
GsaI	CCCAGC	1 cut(s)	677
GsuI	CTGGAG	1 cut(s)	582
HaeIII	GGCC	3 cut(s)	44, 207, 836
HapII	CCGG	1 cut(s)	348
Hin1II	CATG	3 cut(s)	250, 313, 697
HinfI	GANTC	5 cut(s)	17, 432, 442, 590, 697
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	525
Hpy188I	TCNGA	4 cut(s)	119, 154, 451, 927
Hpy188III	TCNNGA	4 cut(s)	14, 436, 599, 694
Hpy8I	GTNNAC	1 cut(s)	525
HpyAV	CCTTC	2 cut(s)	625, 716
HpyCH4III	ACNGT	7 cut(s)	243, 266, 361, 479, 529, 555, 853
HpyCH4V	TGCA	7 cut(s)	93, 338, 357, 403, 656, 687, 779
HpyF10VI	GCNNNNNNNGC	6 cut(s)	50, 344, 350, 611, 620, 785
HpyF3I	CTNAG	4 cut(s)	465, 569, 857, 926
Hsp92II	CATG	3 cut(s)	250, 313, 697
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	4 cut(s)	10, 535, 746, 891
LmnI	GCTCC	1 cut(s)	50
Lsp1109I	GCAGC	4 cut(s)	331, 350, 577, 716
LweI	GCATC	3 cut(s)	390, 398, 665
MaeIII	GTNAC	2 cut(s)	367, 725
MalI	GATC	4 cut(s)	12, 537, 748, 893
MboI	GATC	4 cut(s)	10, 535, 746, 891
MboII	GAAGA	6 cut(s)	451, 485, 722, 725, 731, 811
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	3 cut(s)	171, 333, 768
MlyI	GAGTC	3 cut(s)	426, 436, 599
MseI	TTAA	2 cut(s)	273, 959
MspA1I	CMGCKG	3 cut(s)	344, 541, 568
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	3 cut(s)	203, 349, 907
MvaI	CCWGG	2 cut(s)	203, 907
MwoI	GCNNNNNNNGC	6 cut(s)	50, 344, 350, 611, 620, 785
NciI	CCSGG	1 cut(s)	349
NcoI	CCATGG	1 cut(s)	309
NdeII	GATC	4 cut(s)	10, 535, 746, 891
NlaIII	CATG	3 cut(s)	250, 313, 697
NlaIV	GGNNCC	2 cut(s)	43, 911
NmeAIII	GCCGAG	1 cut(s)	842
NmuCI	GTSAC	1 cut(s)	367
PagI	TCATGA	1 cut(s)	693
PfeI	GAWTC	2 cut(s)	17, 697
PkrI	GCNGC	5 cut(s)	340, 343, 346, 567, 706
PleI	GAGTC	3 cut(s)	426, 436, 598
PpsI	GAGTC	3 cut(s)	426, 436, 598
PpuMI	RGGWCCY	1 cut(s)	910
Psp124BI	GAGCTC	1 cut(s)	124
Psp5II	RGGWCCY	1 cut(s)	910
Psp6I	CCWGG	2 cut(s)	201, 905
PspFI	CCCAGC	1 cut(s)	673
PspGI	CCWGG	2 cut(s)	201, 905
PspN4I	GGNNCC	2 cut(s)	43, 911
PspPI	GGNCC	4 cut(s)	42, 205, 835, 910
PspPPI	RGGWCCY	1 cut(s)	910
PstNI	CAGNNNCTG	1 cut(s)	344
PvuII	CAGCTG	2 cut(s)	541, 568
RsaI	GTAC	5 cut(s)	77, 140, 251, 524, 586
RsaNI	GTAC	5 cut(s)	76, 139, 250, 523, 585
SacI	GAGCTC	1 cut(s)	124
SaqAI	TTAA	2 cut(s)	273, 959
SatI	GCNGC	5 cut(s)	339, 342, 345, 566, 705
Sau3AI	GATC	4 cut(s)	10, 535, 746, 891
Sau96I	GGNCC	4 cut(s)	42, 205, 835, 910
SchI	GAGTC	3 cut(s)	426, 436, 599
ScrFI	CCNGG	3 cut(s)	203, 349, 907
SduI	GDGCHC	1 cut(s)	124
SfaNI	GCATC	3 cut(s)	390, 398, 665
SfcI	CTRYAG	1 cut(s)	21
SinI	GGWCC	1 cut(s)	910
Sse9I	AATT	3 cut(s)	171, 333, 768
SsiI	CCGC	1 cut(s)	342
SstI	GAGCTC	1 cut(s)	124
StyD4I	CCNGG	3 cut(s)	201, 347, 905
StyI	CCWWGG	3 cut(s)	208, 309, 378
TaaI	ACNGT	7 cut(s)	243, 266, 361, 479, 529, 555, 853
TaqI	TCGA	1 cut(s)	749
TasI	AATT	3 cut(s)	171, 333, 768
TatI	WGTACW	3 cut(s)	138, 249, 522
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	2 cut(s)	17, 697
Tru1I	TTAA	2 cut(s)	273, 959
Tru9I	TTAA	2 cut(s)	273, 959
TscAI	CASTG	2 cut(s)	366, 532
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	4 cut(s)	338, 344, 565, 704
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	2 cut(s)	235, 732
TspGWI	ACGGA	1 cut(s)	759
TspRI	CASTG	2 cut(s)	366, 532
VpaK11BI	GGWCC	1 cut(s)	910
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.