Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002958

Physical Location & Seq

Genomic Coordinates Forward (+)

25377884 .. 25402788

Gene Structure 24905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0146600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1752 bp

ATGTCGATCATGCTGAGGCATATCCTGAAACGAAATTCGAATTCGTACATTGGGCGGCTGGCTTCGGCTTCCGCGTCTGGACGGCTATTCTCGTGGAGGAGGAGGAGGAGGACTTTCTGCAGTGAACCGCAGAGAGAGTCTATTCAATACGACGTCGTGATCGTTGGGGCGGGACCGGCTGGTTTATCGGCGGCGATTAGGTTCAAACAATTGTGCCGTGAAAATGATACTGATTTATCAGTCTGCGTTGTGGAGAAAGGAGCTGAAGTCGGTGCTCACATTATTTCTGGTAATGTCTTTGAACCCCGGGCTCTGGATGAACTTATCCCACAATGGAGACAGGAAGAGTCACCCATCACCGTCCCTGTTTCTTCTGACAAGTTTTTGTTACTTACAAAGAATCATGCATTTTCGCTGCCTTGTCCTTTTAATAACAGAGGAAACTATGTCATAAGTTTAAGTCAGTTAGTACGATGGATGGGAGTGAAGGCAGAAGAATTGGGAGTAGAAATATATCCAGGCTTTGCTGCTAGTGAGATATTATATGATTCAAATGACACTGTTGTTGGCATTCGAACTAATGATATGGGAATATCCAAAGATGGTTCAAAGAAGGAAAATTTTCAACCTGGCATAGAATTGAAAGGGCGGGTCACACTTCTAGCTGAAGGGTGTCGAGGATCATTGTCAGAGAAAATAATGGATAAATACAACTTGAGAGAGAAGGGGCATGCTCAGCATCAGACTTATGCTTTGGGAATCAAAGAGGTTTGGGAAATTGATGAGAGAAAACACAAACCAGGTGCTGTGATTCACACGCTTGGTTGGCCCTTGGATCAGAAGACATATGGAGGTTCATTTCTGTACCACATGAAAGATAGACAGATTTCTATTGGCTTTGTGGTTGCTTTGAATTATCAAAACCCTTTCTTAAGTCCATATGAAGAATTCCAGAAATTAAAGCATCATCCTGCAATCAAGCCACTGCTAGAGGGTGGGACTGTTCTTCAATATGGTGCTCGCACCTTGAATGAAGGTGGCTTTCAGTCTATCCCATATCCAGCTTTCCCTGGAGGAGCAGTTATTGGATGCTCTGCTGGCTTTTTAAATGTACCAAAAATTAAGGGAACACATACTGCAATGAAATCAGGCATGCTAGCTGCGGAAGCATCGTTTGGTGTTCTTCATAAAGGCTCAAGTATGGAAAAATACTGGGATGCTTTAAGGAATTCGTGGATATGGGAAGAATTATATAGAGCACGGAACTTCCGACCGGCATTTGAGTATGGACTTATTCCTGGCTTGGCCATAAGTGCGTTAGAACACTACATAATGAAAGGGAGAGCTGCCTTAACGCTGAAGAATGGAAAACCTGATAATGAAGCAACAAATGTTGCAGAGTTCCACTGTCCAATTAAATATCCAAAGCCAGATGGGGTTTTATCTTTTGATATTCCAACCTCCCTACACAGGAGCAATACAAATCATGAGCATGACCAACCAGCTCACCTTCGGTTGAAGGACCCGAAGAAGCCTGAACTTGTCAACTTGCCAGTGTATGCTGGTCCTGAGTCACGATATTGTCCTGCACGTGTTTACGAGTATAACCCTGATGAAACGGGTCAGCTGAAGTTGCAGATCAACGCTCAGAATTGCTTACATTGCAAGGCTTGCGATATCAAAGACCCTAAGCAAAACATACAGTGGACTGCGCCAGAAGGAGGTGGTGGTCCAGGCTATTCAATAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

583

Amino Acids

65.04

Weight (kDa)

8.81

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ETFQO_UQ-bd	PF21162	250 - 343	2.4e-43	ETF-QO, ubiquinone-binding
Fer4_ETF_QO	PF05187	479 - 581	2.8e-45	Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05290 AT5G27520
fragaria_vesca	FvH4_4g14900 FvH4_6g05760
malus_domestica	MD04G1205900.v1.1 MD12G1220000.v1.1 MD13G1186400.v1.1 MD16G1187100.v1.1
prunus_persica	Prupe.1G154100_v2.0.a1 Prupe.1G154100_v2.0.a1 Prupe.6G326700_v2.0.a1
pyrus_communis	pycom04g18220 pycom12g20540 pycom13g16130 pycom16g15710
rosa_chinensis	RchiOBHm_Chr3g0454671 RchiOBHm_Chr4g0417191 RchiOBHm_Chr4g0417301
rosa_laevigata	RLG00000007919 RLG00000025425
rosa_multiflora	Rmu_sc0000646.1_g000002 Rmu_sc0002129.1_g000048
rosa_roxburghii	Rroxscaffold_5G00361050 Rroxscaffold_6G00424870
rosa_rugosa	Rorug03G0001100.1 Rorug04G0146200 Rorug04G0146600
rosa_samantha	Rh3AG061000 Rh3CG061700 Rh3DG062600 Rh4AG209400 Rh4AG210200 Rh4CG220600 Rh4CG221200 Rh4DG207200 Rh4DG208200
rosa_wichuraiana	Rw3G004750 Rw4G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	156
AccII	CGCG	1 cut(s)	74
AciI	CCGC	7 cut(s)	55, 72, 128, 170, 191, 649, 1163
AclWI	GGATC	2 cut(s)	688, 843
AcoI	YGGCCR	1 cut(s)	1305
AcsI	RAATTY	5 cut(s)	34, 40, 619, 947, 1228
AcuI	CTGAAG	4 cut(s)	285, 687, 1379, 1649
AcvI	CACGTG	1 cut(s)	1592
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	4 cut(s)	47, 471, 866, 1113
AfiI	CCNNNNNNNGG	3 cut(s)	313, 1470, 1721
AflII	CTTAAG	1 cut(s)	931
AflIII	ACRYGT	1 cut(s)	1591
AjnI	CCWGG	6 cut(s)	517, 628, 799, 1069, 1297, 1732
AjuI	GAANNNNNNNTTGG	2 cut(s)	1158, 1190
AluBI	AGCT	7 cut(s)	263, 665, 1064, 1160, 1346, 1505, 1627
AluI	AGCT	7 cut(s)	263, 665, 1064, 1160, 1346, 1505, 1627
Alw21I	GWGCWC	3 cut(s)	277, 1021, 1261
Alw26I	GTCTC	1 cut(s)	331
AlwI	GGATC	2 cut(s)	688, 843
AlwNI	CAGNNNCTG	1 cut(s)	806
Ama87I	CYCGRG	1 cut(s)	306
AoxI	GGCC	2 cut(s)	827, 1305
ApeKI	GCWGC	4 cut(s)	415, 527, 1160, 1346
ApoI	RAATTY	5 cut(s)	34, 40, 619, 947, 1228
ArsI	GACNNNNNNTTYG	2 cut(s)	736, 768
Asp700I	GAANNNNTTC	1 cut(s)	621
AspLEI	GCGC	1 cut(s)	1714
AspS9I	GGNCC	5 cut(s)	173, 828, 1522, 1565, 1730
AsuC2I	CCSGG	2 cut(s)	307, 308
AsuHPI	GGTGA	3 cut(s)	342, 349, 1499
AsuII	TTCGAA	2 cut(s)	38, 574
AsuNHI	GCTAGC	1 cut(s)	1156
AvaI	CYCGRG	1 cut(s)	306
AvaII	GGWCC	4 cut(s)	173, 1522, 1565, 1730
BalI	TGGCCA	1 cut(s)	1307
BanII	GRGCYC	1 cut(s)	313
BauI	CACGAG	1 cut(s)	91
BbrPI	CACGTG	1 cut(s)	1592
BbsI	GAAGAC	1 cut(s)	848
Bbv12I	GWGCWC	3 cut(s)	277, 1021, 1261
BbvCI	CCTCAGC	1 cut(s)	14
BbvI	GCAGC	4 cut(s)	402, 514, 1147, 1333
BccI	CCATC	5 cut(s)	362, 468, 472, 596, 1427
BceAI	ACGGC	2 cut(s)	98, 201
BciT130I	CCWGG	6 cut(s)	519, 630, 801, 1071, 1299, 1734
BcnI	CCSGG	2 cut(s)	307, 308
BcoDI	GTCTC	1 cut(s)	331
BfaI	CTAG	4 cut(s)	531, 662, 989, 1157
BfmI	CTRYAG	1 cut(s)	118
BfrI	CTTAAG	1 cut(s)	931
BisI	GCNGC	6 cut(s)	56, 192, 416, 528, 1161, 1347
BlpI	GCTNAGC	1 cut(s)	735
BlsI	GCNGC	6 cut(s)	57, 193, 417, 529, 1162, 1348
Bme1390I	CCNGG	8 cut(s)	307, 308, 519, 630, 801, 1071, 1299, 1734
Bme18I	GGWCC	4 cut(s)	173, 1522, 1565, 1730
BmeT110I	CYCGRG	1 cut(s)	306
BmgT120I	GGNCC	5 cut(s)	173, 828, 1522, 1565, 1730
BmiI	GGNNCC	2 cut(s)	174, 1524
BmrFI	CCNGG	8 cut(s)	307, 308, 519, 630, 801, 1071, 1299, 1734
BmrI	ACTGGG	1 cut(s)	1222
BmsI	GCATC	5 cut(s)	748, 973, 1079, 1178, 1207
BmtI	GCTAGC	1 cut(s)	1160
BmuI	ACTGGG	1 cut(s)	1222
BpiI	GAAGAC	1 cut(s)	848
BpmI	CTGGAG	1 cut(s)	1092
Bpu10I	CCTNAGC	2 cut(s)	14, 1689
Bpu1102I	GCTNAGC	1 cut(s)	735
Bpu14I	TTCGAA	2 cut(s)	38, 574
BpuEI	CTTGAG	2 cut(s)	736, 1180
BpuMI	CCSGG	2 cut(s)	307, 308
BsaAI	YACGTR	1 cut(s)	1592
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	4 cut(s)	305, 306, 831, 1069
BsaXI	ACNNNNNCTCC	4 cut(s)	252, 282, 1065, 1095
Bsc4I	CCNNNNNNNGG	3 cut(s)	313, 1470, 1721
Bse118I	RCCGGY	2 cut(s)	175, 1273
Bse1I	ACTGG	2 cut(s)	1217, 1553
Bse3DI	GCAATG	2 cut(s)	1146, 1660
BseBI	CCWGG	6 cut(s)	519, 630, 801, 1071, 1299, 1734
BseDI	CCNNGG	4 cut(s)	305, 306, 831, 1069
BseGI	GGATG	5 cut(s)	322, 483, 967, 1094, 1222
BseLI	CCNNNNNNNGG	3 cut(s)	313, 1470, 1721
BseMI	GCAATG	2 cut(s)	1146, 1660
BseMII	CTCAG	4 cut(s)	5, 749, 1560, 1661
BseNI	ACTGG	2 cut(s)	1217, 1553
BseRI	GAGGAG	5 cut(s)	112, 115, 118, 121, 1089
BseXI	GCAGC	4 cut(s)	402, 514, 1147, 1333
BsgI	GTGCAG	1 cut(s)	1572
Bsh1236I	CGCG	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	1274
BshFI	GGCC	2 cut(s)	829, 1307
BsiEI	CGRYCG	1 cut(s)	1274
BsiHKAI	GWGCWC	3 cut(s)	277, 1021, 1261
BsiHKCI	CYCGRG	1 cut(s)	306
BsiSI	CCGG	3 cut(s)	176, 307, 1274
BslFI	GGGAC	3 cut(s)	186, 347, 1012
BslI	CCNNNNNNNGG	3 cut(s)	313, 1470, 1721
BsmAI	GTCTC	1 cut(s)	331
BsmFI	GGGAC	3 cut(s)	186, 347, 1012
BsmI	GAATGC	1 cut(s)	570
BsnI	GGCC	2 cut(s)	829, 1307
BsoBI	CYCGRG	1 cut(s)	306
Bsp119I	TTCGAA	2 cut(s)	38, 574
Bsp1286I	GDGCHC	4 cut(s)	277, 313, 1021, 1261
Bsp143I	GATC	5 cut(s)	6, 159, 680, 835, 1638
Bsp1720I	GCTNAGC	1 cut(s)	735
BspACI	CCGC	7 cut(s)	55, 72, 128, 170, 191, 649, 1163
BspANI	GGCC	2 cut(s)	829, 1307
BspCNI	CTCAG	4 cut(s)	6, 748, 1561, 1660
BspFNI	CGCG	1 cut(s)	74
BspHI	TCATGA	1 cut(s)	1486
BspLI	GGNNCC	2 cut(s)	174, 1524
BspMAI	CTGCAG	1 cut(s)	122
BspOI	GCTAGC	1 cut(s)	1160
BspPI	GGATC	2 cut(s)	688, 843
BspT104I	TTCGAA	2 cut(s)	38, 574
BspTI	CTTAAG	1 cut(s)	931
BsrDI	GCAATG	2 cut(s)	1146, 1660
BsrFI	RCCGGY	2 cut(s)	175, 1273
BsrI	ACTGG	2 cut(s)	1217, 1553
BssAI	RCCGGY	2 cut(s)	175, 1273
BssECI	CCNNGG	4 cut(s)	305, 306, 831, 1069
BssMI	GATC	5 cut(s)	6, 159, 680, 835, 1638
BssNI	GRCGYC	1 cut(s)	153
BssSI	CACGAG	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	831
Bst2BI	CACGAG	1 cut(s)	91
Bst2UI	CCWGG	6 cut(s)	519, 630, 801, 1071, 1299, 1734
Bst4CI	ACNGT	5 cut(s)	361, 562, 1003, 1409, 1704
Bst6I	CTCTTC	1 cut(s)	339
BstACI	GRCGYC	1 cut(s)	153
BstAFI	CTTAAG	1 cut(s)	931
BstAPI	GCANNNNNTGC	1 cut(s)	1671
BstBAI	YACGTR	1 cut(s)	1592
BstBI	TTCGAA	2 cut(s)	38, 574
BstC8I	GCNNGC	7 cut(s)	60, 732, 1021, 1099, 1154, 1158, 1672
BstDEI	CTNAG	5 cut(s)	14, 735, 1569, 1647, 1689
BstF5I	GGATG	5 cut(s)	322, 483, 967, 1094, 1222
BstFNI	CGCG	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	1714
BstKTI	GATC	5 cut(s)	9, 162, 683, 838, 1641
BstMAI	GTCTC	1 cut(s)	331
BstMBI	GATC	5 cut(s)	6, 159, 680, 835, 1638
BstMCI	CGRYCG	1 cut(s)	1274
BstMWI	GCNNNNNNNGC	9 cut(s)	176, 736, 826, 1098, 1166, 1313, 1633, 1662, 1671
BstNI	CCWGG	6 cut(s)	519, 630, 801, 1071, 1299, 1734
BstNSI	RCATGY	2 cut(s)	734, 1156
BstSCI	CCNGG	8 cut(s)	305, 306, 517, 628, 799, 1069, 1297, 1732
BstSFI	CTRYAG	1 cut(s)	118
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	4 cut(s)	402, 514, 1147, 1333
BstV2I	GAAGAC	1 cut(s)	848
BsuRI	GGCC	2 cut(s)	829, 1307
BtsCI	GGATG	5 cut(s)	322, 483, 967, 1094, 1222
BtsI	GCAGTG	2 cut(s)	127, 983
BtsIMutI	CAGTG	6 cut(s)	127, 558, 983, 1405, 1560, 1709
Cac8I	GCNNGC	7 cut(s)	60, 732, 1021, 1099, 1154, 1158, 1672
CaiI	CAGNNNCTG	1 cut(s)	806
CciI	TCATGA	1 cut(s)	1486
CfoI	GCGC	1 cut(s)	1714
Cfr10I	RCCGGY	2 cut(s)	175, 1273
Cfr13I	GGNCC	5 cut(s)	173, 828, 1522, 1565, 1730
Cfr9I	CCCGGG	1 cut(s)	306
CseI	GACGC	1 cut(s)	63
CsiI	ACCWGGT	1 cut(s)	799
Csp6I	GTAC	4 cut(s)	46, 470, 865, 1112
CviAII	CATG	7 cut(s)	10, 404, 731, 871, 1153, 1487, 1493
CviQI	GTAC	4 cut(s)	46, 470, 865, 1112
DdeI	CTNAG	5 cut(s)	14, 735, 1569, 1647, 1689
DpnI	GATC	5 cut(s)	8, 161, 682, 837, 1640
DpnII	GATC	5 cut(s)	6, 159, 680, 835, 1638
DraI	TTTAAA	1 cut(s)	1107
EaeI	YGGCCR	1 cut(s)	1305
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	831
Eco24I	GRGCYC	1 cut(s)	313
Eco32I	GATATC	1 cut(s)	1678
Eco47I	GGWCC	4 cut(s)	173, 1522, 1565, 1730
Eco57I	CTGAAG	4 cut(s)	285, 687, 1379, 1649
Eco72I	CACGTG	1 cut(s)	1592
Eco88I	CYCGRG	1 cut(s)	306
EcoO109I	RGGNCCY	1 cut(s)	1522
EcoRI	GAATTC	3 cut(s)	40, 947, 1228
EcoRII	CCWGG	6 cut(s)	517, 628, 799, 1069, 1297, 1732
EcoRV	GATATC	1 cut(s)	1678
EcoT14I	CCWWGG	1 cut(s)	831
EcoT22I	ATGCAT	1 cut(s)	409
EcoT38I	GRGCYC	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	831
FaeI	CATG	7 cut(s)	13, 407, 734, 874, 1156, 1490, 1496
FaqI	GGGAC	3 cut(s)	186, 347, 1012
FatI	CATG	7 cut(s)	9, 403, 730, 870, 1152, 1486, 1492
FauI	CCCGC	2 cut(s)	163, 642
FauNDI	CATATG	2 cut(s)	847, 940
Fnu4HI	GCNGC	6 cut(s)	56, 192, 416, 528, 1161, 1347
FokI	GGATG	5 cut(s)	329, 490, 954, 1101, 1229
FriOI	GRGCYC	1 cut(s)	313
Fsp4HI	GCNGC	6 cut(s)	56, 192, 416, 528, 1161, 1347
FspBI	CTAG	4 cut(s)	531, 662, 989, 1157
GlaI	GCGC	1 cut(s)	1713
GluI	GCNGC	6 cut(s)	56, 192, 416, 528, 1161, 1347
GsuI	CTGGAG	1 cut(s)	1092
HaeIII	GGCC	2 cut(s)	829, 1307
HapII	CCGG	3 cut(s)	176, 307, 1274
HgaI	GACGC	1 cut(s)	63
HhaI	GCGC	1 cut(s)	1714
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	7 cut(s)	13, 407, 734, 874, 1156, 1490, 1496
Hin6I	GCGC	1 cut(s)	1712
HinP1I	GCGC	1 cut(s)	1712
HincII	GTYRAC	1 cut(s)	1546
HindII	GTYRAC	1 cut(s)	1546
HinfI	GANTC	7 cut(s)	137, 347, 400, 548, 759, 811, 1571
HpaII	CCGG	3 cut(s)	176, 307, 1274
HphI	GGTGA	3 cut(s)	342, 349, 1499
Hpy166II	GTNNAC	4 cut(s)	125, 1546, 1597, 1707
Hpy188I	TCNGA	6 cut(s)	376, 691, 744, 840, 1271, 1650
Hpy188III	TCNNGA	8 cut(s)	25, 78, 157, 314, 952, 1487, 1568, 1575
Hpy8I	GTNNAC	4 cut(s)	125, 1546, 1597, 1707
Hpy99I	CGWCG	2 cut(s)	155, 158
HpyAV	CCTTC	8 cut(s)	481, 607, 662, 718, 1028, 1513, 1520, 1712
HpyCH4III	ACNGT	5 cut(s)	361, 562, 1003, 1409, 1704
HpyCH4IV	ACGT	2 cut(s)	153, 1591
HpyCH4V	TGCA	8 cut(s)	120, 407, 974, 1139, 1397, 1589, 1636, 1665
HpyF10VI	GCNNNNNNNGC	9 cut(s)	176, 736, 826, 1098, 1166, 1313, 1633, 1662, 1671
HpyF3I	CTNAG	5 cut(s)	14, 735, 1569, 1647, 1689
HpySE526I	ACGT	2 cut(s)	153, 1591
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	7 cut(s)	13, 407, 734, 874, 1156, 1490, 1496
HspAI	GCGC	1 cut(s)	1712
Kzo9I	GATC	5 cut(s)	6, 159, 680, 835, 1638
LmnI	GCTCC	3 cut(s)	260, 1076, 1473
Lsp1109I	GCAGC	4 cut(s)	402, 514, 1147, 1333
LweI	GCATC	5 cut(s)	748, 973, 1079, 1178, 1207
MabI	ACCWGGT	1 cut(s)	799
MaeI	CTAG	4 cut(s)	531, 662, 989, 1157
MaeII	ACGT	2 cut(s)	153, 1591
MaeIII	GTNAC	4 cut(s)	348, 387, 652, 1572
MalI	GATC	5 cut(s)	8, 161, 682, 837, 1640
MboI	GATC	5 cut(s)	6, 159, 680, 835, 1638
MfeI	CAATTG	1 cut(s)	209
MhlI	GDGCHC	4 cut(s)	277, 313, 1021, 1261
MlsI	TGGCCA	1 cut(s)	1307
MluNI	TGGCCA	1 cut(s)	1307
MlyI	GAGTC	3 cut(s)	146, 356, 1580
MmeI	TCCRAC	2 cut(s)	1294, 1481
Mox20I	TGGCCA	1 cut(s)	1307
Mph1103I	ATGCAT	1 cut(s)	409
MroXI	GAANNNNTTC	1 cut(s)	621
MscI	TGGCCA	1 cut(s)	1307
MseI	TTAA	9 cut(s)	429, 458, 932, 959, 1106, 1122, 1223, 1352, 1416
MslI	CAYNNNNRTG	1 cut(s)	1491
Msp20I	TGGCCA	1 cut(s)	1307
MspA1I	CMGCKG	1 cut(s)	1627
MspCI	CTTAAG	1 cut(s)	931
MspI	CCGG	3 cut(s)	176, 307, 1274
MspR9I	CCNGG	8 cut(s)	307, 308, 519, 630, 801, 1071, 1299, 1734
MunI	CAATTG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	570
MvaI	CCWGG	6 cut(s)	519, 630, 801, 1071, 1299, 1734
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	9 cut(s)	176, 736, 826, 1098, 1166, 1313, 1633, 1662, 1671
NciI	CCSGG	2 cut(s)	307, 308
NdeI	CATATG	2 cut(s)	847, 940
NdeII	GATC	5 cut(s)	6, 159, 680, 835, 1638
NheI	GCTAGC	1 cut(s)	1156
NlaIII	CATG	7 cut(s)	13, 407, 734, 874, 1156, 1490, 1496
NlaIV	GGNNCC	2 cut(s)	174, 1524
NmuCI	GTSAC	3 cut(s)	348, 652, 1572
NsiI	ATGCAT	1 cut(s)	409
NspI	RCATGY	2 cut(s)	734, 1156
NspV	TTCGAA	2 cut(s)	38, 574
PaeI	GCATGC	2 cut(s)	734, 1156
PagI	TCATGA	1 cut(s)	1486
PcsI	WCGNNNNNNNCGW	3 cut(s)	71, 159, 1267
PctI	GAATGC	1 cut(s)	570
PdmI	GAANNNNTTC	1 cut(s)	621
PfeI	GAWTC	4 cut(s)	400, 548, 759, 811
PkrI	GCNGC	6 cut(s)	57, 193, 417, 529, 1162, 1348
PleI	GAGTC	3 cut(s)	145, 355, 1579
PmaCI	CACGTG	1 cut(s)	1592
PmlI	CACGTG	1 cut(s)	1592
PpsI	GAGTC	3 cut(s)	145, 355, 1579
Ppu21I	YACGTR	1 cut(s)	1592
PpuMI	RGGWCCY	1 cut(s)	1522
Psp5II	RGGWCCY	1 cut(s)	1522
Psp6I	CCWGG	6 cut(s)	517, 628, 799, 1069, 1297, 1732
PspCI	CACGTG	1 cut(s)	1592
PspGI	CCWGG	6 cut(s)	517, 628, 799, 1069, 1297, 1732
PspN4I	GGNNCC	2 cut(s)	174, 1524
PspPI	GGNCC	5 cut(s)	173, 828, 1522, 1565, 1730
PspPPI	RGGWCCY	1 cut(s)	1522
PstI	CTGCAG	1 cut(s)	122
PstNI	CAGNNNCTG	1 cut(s)	806
PvuII	CAGCTG	1 cut(s)	1627
RsaI	GTAC	4 cut(s)	47, 471, 866, 1113
RsaNI	GTAC	4 cut(s)	46, 470, 865, 1112
RseI	CAYNNNNRTG	1 cut(s)	1491
SaqAI	TTAA	9 cut(s)	429, 458, 932, 959, 1106, 1122, 1223, 1352, 1416
SatI	GCNGC	6 cut(s)	56, 192, 416, 528, 1161, 1347
Sau3AI	GATC	5 cut(s)	6, 159, 680, 835, 1638
Sau96I	GGNCC	5 cut(s)	173, 828, 1522, 1565, 1730
SchI	GAGTC	3 cut(s)	146, 356, 1580
ScrFI	CCNGG	8 cut(s)	307, 308, 519, 630, 801, 1071, 1299, 1734
SduI	GDGCHC	4 cut(s)	277, 313, 1021, 1261
SexAI	ACCWGGT	1 cut(s)	799
SfaNI	GCATC	5 cut(s)	748, 973, 1079, 1178, 1207
SfcI	CTRYAG	1 cut(s)	118
SfuI	TTCGAA	2 cut(s)	38, 574
SinI	GGWCC	4 cut(s)	173, 1522, 1565, 1730
SmaI	CCCGGG	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	1491
SmlI	CTYRAG	3 cut(s)	715, 931, 1195
SmoI	CTYRAG	3 cut(s)	715, 931, 1195
SphI	GCATGC	2 cut(s)	734, 1156
SsiI	CCGC	7 cut(s)	55, 72, 128, 170, 191, 649, 1163
SspMI	CTAG	4 cut(s)	531, 662, 989, 1157
StyD4I	CCNGG	8 cut(s)	305, 306, 517, 628, 799, 1069, 1297, 1732
StyI	CCWWGG	1 cut(s)	831
TaaI	ACNGT	5 cut(s)	361, 562, 1003, 1409, 1704
TaiI	ACGT	2 cut(s)	156, 1594
TaqI	TCGA	4 cut(s)	5, 38, 574, 676
TauI	GCSGC	2 cut(s)	58, 194
TfiI	GAWTC	4 cut(s)	400, 548, 759, 811
Tru1I	TTAA	9 cut(s)	429, 458, 932, 959, 1106, 1122, 1223, 1352, 1416
Tru9I	TTAA	9 cut(s)	429, 458, 932, 959, 1106, 1122, 1223, 1352, 1416
TscAI	CASTG	6 cut(s)	127, 565, 990, 1412, 1560, 1709
TseFI	GTSAC	3 cut(s)	348, 652, 1572
TseI	GCWGC	4 cut(s)	415, 527, 1160, 1346
Tsp45I	GTSAC	3 cut(s)	348, 652, 1572
TspGWI	ACGGA	1 cut(s)	1276
TspMI	CCCGGG	1 cut(s)	306
TspRI	CASTG	6 cut(s)	127, 565, 990, 1412, 1560, 1709
Vha464I	CTTAAG	1 cut(s)	931
VpaK11BI	GGWCC	4 cut(s)	173, 1522, 1565, 1730
XapI	RAATTY	5 cut(s)	34, 40, 619, 947, 1228
XceI	RCATGY	2 cut(s)	734, 1156
XmaI	CCCGGG	1 cut(s)	306
XmnI	GAANNNNTTC	1 cut(s)	621
XspI	CTAG	4 cut(s)	531, 662, 989, 1157
ZraI	GACGTC	1 cut(s)	154
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.