Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002958

Physical Location & Seq

Genomic Coordinates Forward (+)

45542140 .. 45544579

Gene Structure 2440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG221200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGGTTTGATCTTGAATCTGTTGCAGAGGCAACCTCAGGGGCCATTGGAGCTCTGGTCAGCACCACCATCTTGTACCCACTTGATACCTGCAAGACCAAATACCAAGCTGAAGTCCGAGCTCAGAATCAGCTAAAGTACAGGAACATTTCTGATGTTTTCTGGGAAGCAATTTCTACCCGTCAGGTGCTTTCATTATACCAGGGCCTTGGGACAAAGAACCTGCAGTCCTTTATTTCACAATTCATCTACTTCTATGGATACAGTTTTTTTAAAAGGTTGTACTTGGAGAAAAGTGGAAACAAAATCATGGGTACAAAAGCAAACTTGATAGTTGCAGCAGCTGCTGGAGCTTGTACAGTCATAGTGACAATGCCATTGGATACAGCATCATCAAGGATGCAAACAAGTGAGTTTGGGAAATCCAAAGGACTCTGGAAGACCCTGTCAGAGGGAACTTGGATTGAGGCATTTGATGGTCTTGGCATATCACTTCTTTTGACTTCTAACCCATCGATCCAGTATACGGTATTTGATCAGCTGAAGCAAAAGCTATTGATTGGGCAGCTGAGCAAAAGAACTGGTACAGAGTCATCTCCAGAAGCTCTTTCTGCTTTTTCTGCTTTCGCTTTGGGTGCGGTCTCAAAGTGTATCGCATCTTGCTTGACATACCCAGCCATCAGGTGCAAGGTGATGATTCAAGCTGCAGATGAAGATGAAGAAGGTAGCAATGAAGTTCAAGAAAGGTCTCCAAAAACCAAAAAGACAGTTTCAGATGCATTTTATGCCATTTGGAGAAGGGAGGGGCCACTGGGTTTCTTCAAAGGATTACAGGCTCAGATACTAAAAACTGTTCTAAGCTCGGCATTACTATTGATGATCAAGGAGAAGATCACAAAAACCACGTGGGTCCTATTGATTGCACTAAAGAAATTTCTCTTTCTCAAGCAAAGCCGATTAAAGAGCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

323

Amino Acids

35.66

Weight (kDa)

9.43

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	6 - 98	1.2e-15	Mitochondrial carrier protein
Mito_carr	PF00153	108 - 185	1.7e-06	Mitochondrial carrier protein
Mito_carr	PF00153	203 - 300	2.6e-15	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05290 AT5G27520
fragaria_vesca	FvH4_4g14900 FvH4_6g05760
malus_domestica	MD04G1205900.v1.1 MD12G1220000.v1.1 MD13G1186400.v1.1 MD16G1187100.v1.1
prunus_persica	Prupe.1G154100_v2.0.a1 Prupe.1G154100_v2.0.a1 Prupe.6G326700_v2.0.a1
pyrus_communis	pycom04g18220 pycom12g20540 pycom13g16130 pycom16g15710
rosa_chinensis	RchiOBHm_Chr3g0454671 RchiOBHm_Chr4g0417191 RchiOBHm_Chr4g0417301
rosa_laevigata	RLG00000007919 RLG00000025425
rosa_multiflora	Rmu_sc0000646.1_g000002 Rmu_sc0002129.1_g000048
rosa_roxburghii	Rroxscaffold_5G00361050 Rroxscaffold_6G00424870
rosa_rugosa	Rorug03G0001100.1 Rorug04G0146200 Rorug04G0146600
rosa_samantha	Rh3AG061000 Rh3CG061700 Rh3DG062600 Rh4AG209400 Rh4AG210200 Rh4CG220600 Rh4CG221200 Rh4DG207200 Rh4DG208200
rosa_wichuraiana	Rw3G004750 Rw4G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	98, 231
AccI	GTMKAC	1 cut(s)	524
AciI	CCGC	1 cut(s)	638
AclWI	GGATC	1 cut(s)	511
AcsI	RAATTY	1 cut(s)	932
AcuI	CTGAAG	2 cut(s)	132, 563
AcvI	CACGTG	1 cut(s)	906
AfaI	GTAC	6 cut(s)	77, 140, 284, 316, 358, 586
AfeI	AGCGCT	1 cut(s)	967
AfiI	CCNNNNNNNGG	2 cut(s)	451, 526
AgsI	TTSAA	4 cut(s)	17, 701, 740, 823
AjnI	CCWGG	1 cut(s)	201
AloI	GAACNNNNNNTCC	2 cut(s)	212, 244
Alw21I	GWGCWC	2 cut(s)	55, 124
Alw26I	GTCTC	2 cut(s)	646, 753
AlwI	GGATC	1 cut(s)	511
AlwNI	CAGNNNCTG	2 cut(s)	344, 347
Aor51HI	AGCGCT	1 cut(s)	967
AoxI	GGCC	3 cut(s)	42, 205, 806
ApeKI	GCWGC	5 cut(s)	338, 341, 344, 565, 704
ApoI	RAATTY	1 cut(s)	932
AspLEI	GCGC	1 cut(s)	968
AspS9I	GGNCC	4 cut(s)	42, 205, 806, 910
AsuHPI	GGTGA	1 cut(s)	703
AvaII	GGWCC	1 cut(s)	910
AxyI	CCTNAGG	1 cut(s)	37
BanII	GRGCYC	2 cut(s)	55, 124
BbrPI	CACGTG	1 cut(s)	906
BbsI	GAAGAC	1 cut(s)	446
Bbv12I	GWGCWC	2 cut(s)	55, 124
BbvI	GCAGC	5 cut(s)	331, 350, 353, 577, 691
BccI	CCATC	4 cut(s)	77, 470, 520, 686
BciT130I	CCWGG	1 cut(s)	203
BciVI	GTATCC	2 cut(s)	254, 376
BclI	TGATCA	2 cut(s)	535, 879
BcoDI	GTCTC	2 cut(s)	646, 753
BfmI	CTRYAG	2 cut(s)	224, 705
BfoI	RGCGCY	1 cut(s)	969
BfuAI	ACCTGC	2 cut(s)	98, 231
BfuI	GTATCC	2 cut(s)	254, 376
BisI	GCNGC	5 cut(s)	339, 342, 345, 566, 705
BlpI	GCTNAGC	1 cut(s)	569
BlsI	GCNGC	5 cut(s)	340, 343, 346, 567, 706
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	1 cut(s)	910
BmgT120I	GGNCC	4 cut(s)	42, 205, 806, 910
BmiI	GGNNCC	3 cut(s)	43, 807, 911
BmrFI	CCNGG	1 cut(s)	203
BmrI	ACTGGG	1 cut(s)	821
BmsI	GCATC	4 cut(s)	390, 398, 665, 766
BmuI	ACTGGG	1 cut(s)	821
BpiI	GAAGAC	1 cut(s)	446
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	2 cut(s)	369, 582
Bpu1102I	GCTNAGC	1 cut(s)	569
BpuEI	CTTGAG	1 cut(s)	929
Bsa29I	ATCGAT	1 cut(s)	515
BsaAI	YACGTR	1 cut(s)	906
BsaI	GGTCTC	2 cut(s)	646, 753
BsaJI	CCNNGG	2 cut(s)	202, 208
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	2 cut(s)	451, 526
Bse1I	ACTGG	3 cut(s)	520, 586, 816
Bse21I	CCTNAGG	1 cut(s)	37
Bse3DI	GCAATG	1 cut(s)	736
BseBI	CCWGG	1 cut(s)	203
BseCI	ATCGAT	1 cut(s)	515
BseDI	CCNNGG	2 cut(s)	202, 208
BseGI	GGATG	1 cut(s)	405
BseLI	CCNNNNNNNGG	2 cut(s)	451, 526
BseMI	GCAATG	1 cut(s)	736
BseMII	CTCAG	4 cut(s)	51, 137, 560, 851
BseNI	ACTGG	3 cut(s)	520, 586, 816
BseXI	GCAGC	5 cut(s)	331, 350, 353, 577, 691
BseYI	CCCAGC	1 cut(s)	673
BshFI	GGCC	3 cut(s)	44, 207, 808
BshVI	ATCGAT	1 cut(s)	515
BsiHKAI	GWGCWC	2 cut(s)	55, 124
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	2 cut(s)	451, 526
BsmAI	GTCTC	2 cut(s)	646, 753
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	3 cut(s)	44, 207, 808
Bso31I	GGTCTC	2 cut(s)	646, 753
Bsp1286I	GDGCHC	2 cut(s)	55, 124
Bsp1407I	TGTACA	1 cut(s)	356
Bsp143I	GATC	5 cut(s)	10, 516, 535, 879, 891
Bsp1720I	GCTNAGC	1 cut(s)	569
BspACI	CCGC	1 cut(s)	638
BspANI	GGCC	3 cut(s)	44, 207, 808
BspCNI	CTCAG	4 cut(s)	50, 136, 561, 850
BspDI	ATCGAT	1 cut(s)	515
BspLI	GGNNCC	3 cut(s)	43, 807, 911
BspMAI	CTGCAG	2 cut(s)	228, 709
BspMI	ACCTGC	2 cut(s)	98, 231
BspPI	GGATC	1 cut(s)	511
BspTNI	GGTCTC	2 cut(s)	646, 753
BsrDI	GCAATG	1 cut(s)	736
BsrGI	TGTACA	1 cut(s)	356
BsrI	ACTGG	3 cut(s)	520, 586, 816
BssECI	CCNNGG	2 cut(s)	202, 208
BssMI	GATC	5 cut(s)	10, 516, 535, 879, 891
BssNAI	GTATAC	1 cut(s)	525
BssT1I	CCWWGG	1 cut(s)	208
Bst1107I	GTATAC	1 cut(s)	525
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	5 cut(s)	266, 361, 529, 769, 853
BstAPI	GCANNNNNTGC	2 cut(s)	344, 785
BstAUI	TGTACA	1 cut(s)	356
BstBAI	YACGTR	1 cut(s)	906
BstDEI	CTNAG	5 cut(s)	37, 123, 569, 837, 857
BstENI	CCTNNNNNAGG	1 cut(s)	449
BstF5I	GGATG	1 cut(s)	405
BstH2I	RGCGCY	1 cut(s)	969
BstHHI	GCGC	1 cut(s)	968
BstKTI	GATC	5 cut(s)	13, 519, 538, 882, 894
BstMAI	GTCTC	2 cut(s)	646, 753
BstMBI	GATC	5 cut(s)	10, 516, 535, 879, 891
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 344, 350, 611, 620, 635, 785
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	201
BstSFI	CTRYAG	2 cut(s)	224, 705
BstV1I	GCAGC	5 cut(s)	331, 350, 353, 577, 691
BstV2I	GAAGAC	1 cut(s)	446
BstXI	CCANNNNNNTGG	1 cut(s)	209
BstZ17I	GTATAC	1 cut(s)	525
Bsu15I	ATCGAT	1 cut(s)	515
Bsu36I	CCTNAGG	1 cut(s)	37
BsuI	GTATCC	2 cut(s)	254, 376
BsuRI	GGCC	3 cut(s)	44, 207, 808
BsuTUI	ATCGAT	1 cut(s)	515
BtsCI	GGATG	1 cut(s)	405
BtsIMutI	CAGTG	1 cut(s)	809
BveI	ACCTGC	2 cut(s)	98, 231
CaiI	CAGNNNCTG	2 cut(s)	344, 347
CfoI	GCGC	1 cut(s)	968
Cfr13I	GGNCC	4 cut(s)	42, 205, 806, 910
ClaI	ATCGAT	1 cut(s)	515
Csp6I	GTAC	6 cut(s)	76, 139, 283, 315, 357, 585
CviAII	CATG	1 cut(s)	310
CviQI	GTAC	6 cut(s)	76, 139, 283, 315, 357, 585
DdeI	CTNAG	5 cut(s)	37, 123, 569, 837, 857
DpnI	GATC	5 cut(s)	12, 518, 537, 881, 893
DpnII	GATC	5 cut(s)	10, 516, 535, 879, 891
DraI	TTTAAA	1 cut(s)	274
Ecl136II	GAGCTC	2 cut(s)	53, 122
Eco130I	CCWWGG	1 cut(s)	208
Eco24I	GRGCYC	2 cut(s)	55, 124
Eco31I	GGTCTC	2 cut(s)	646, 753
Eco47I	GGWCC	1 cut(s)	910
Eco47III	AGCGCT	1 cut(s)	967
Eco53kI	GAGCTC	2 cut(s)	53, 122
Eco57I	CTGAAG	2 cut(s)	132, 563
Eco72I	CACGTG	1 cut(s)	906
Eco81I	CCTNAGG	1 cut(s)	37
EcoICRI	GAGCTC	2 cut(s)	53, 122
EcoNI	CCTNNNNNAGG	1 cut(s)	449
EcoO109I	RGGNCCY	2 cut(s)	205, 910
EcoRII	CCWGG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	208
EcoT22I	ATGCAT	1 cut(s)	781
EcoT38I	GRGCYC	2 cut(s)	55, 124
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	1 cut(s)	313
FaiI	YATR	8 cut(s)	199, 258, 311, 365, 488, 525, 670, 786
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	1 cut(s)	309
FbaI	TGATCA	2 cut(s)	535, 879
FblI	GTMKAC	1 cut(s)	524
Fnu4HI	GCNGC	5 cut(s)	339, 342, 345, 566, 705
FokI	GGATG	1 cut(s)	412
FriOI	GRGCYC	2 cut(s)	55, 124
Fsp4HI	GCNGC	5 cut(s)	339, 342, 345, 566, 705
GlaI	GCGC	1 cut(s)	967
GluI	GCNGC	5 cut(s)	339, 342, 345, 566, 705
GsaI	CCCAGC	1 cut(s)	677
GsuI	CTGGAG	2 cut(s)	369, 582
HaeII	RGCGCY	1 cut(s)	969
HaeIII	GGCC	3 cut(s)	44, 207, 808
HhaI	GCGC	1 cut(s)	968
Hin1II	CATG	1 cut(s)	313
Hin6I	GCGC	1 cut(s)	966
HinP1I	GCGC	1 cut(s)	966
HinfI	GANTC	5 cut(s)	17, 127, 432, 590, 697
HphI	GGTGA	1 cut(s)	703
Hpy166II	GTNNAC	1 cut(s)	525
Hpy188I	TCNGA	6 cut(s)	119, 126, 154, 451, 775, 840
Hpy188III	TCNNGA	4 cut(s)	14, 436, 599, 740
Hpy8I	GTNNAC	1 cut(s)	525
HpyAV	CCTTC	2 cut(s)	716, 792
HpyCH4III	ACNGT	5 cut(s)	266, 361, 529, 769, 853
HpyCH4IV	ACGT	1 cut(s)	905
HpyCH4V	TGCA	9 cut(s)	26, 93, 226, 338, 403, 687, 707, 779, 923
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 344, 350, 611, 620, 635, 785
HpyF3I	CTNAG	5 cut(s)	37, 123, 569, 837, 857
HpySE526I	ACGT	1 cut(s)	905
Hsp92II	CATG	1 cut(s)	313
HspAI	GCGC	1 cut(s)	966
Ksp22I	TGATCA	2 cut(s)	535, 879
Kzo9I	GATC	5 cut(s)	10, 516, 535, 879, 891
LmnI	GCTCC	2 cut(s)	50, 350
Lsp1109I	GCAGC	5 cut(s)	331, 350, 353, 577, 691
LweI	GCATC	4 cut(s)	390, 398, 665, 766
MaeII	ACGT	1 cut(s)	905
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	5 cut(s)	12, 518, 537, 881, 893
MboI	GATC	5 cut(s)	10, 516, 535, 879, 891
MboII	GAAGA	5 cut(s)	451, 725, 731, 811, 901
MhlI	GDGCHC	2 cut(s)	55, 124
MluCI	AATT	3 cut(s)	171, 242, 932
MlyI	GAGTC	2 cut(s)	426, 599
MnlI	CCTC	5 cut(s)	22, 46, 445, 460, 796
Mph1103I	ATGCAT	1 cut(s)	781
MseI	TTAA	2 cut(s)	273, 959
MspA1I	CMGCKG	3 cut(s)	344, 541, 568
MspR9I	CCNGG	1 cut(s)	203
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	7 cut(s)	50, 344, 350, 611, 620, 635, 785
NdeII	GATC	5 cut(s)	10, 516, 535, 879, 891
NlaIII	CATG	1 cut(s)	313
NlaIV	GGNNCC	3 cut(s)	43, 807, 911
NmeAIII	GCCGAG	1 cut(s)	842
NmuCI	GTSAC	1 cut(s)	367
NsiI	ATGCAT	1 cut(s)	781
PfeI	GAWTC	3 cut(s)	17, 127, 697
PflFI	GACNNNGTC	1 cut(s)	445
PkrI	GCNGC	5 cut(s)	340, 343, 346, 567, 706
PleI	GAGTC	2 cut(s)	426, 598
PmaCI	CACGTG	1 cut(s)	906
PmlI	CACGTG	1 cut(s)	906
PpsI	GAGTC	2 cut(s)	426, 598
Ppu21I	YACGTR	1 cut(s)	906
PpuMI	RGGWCCY	1 cut(s)	910
Psp124BI	GAGCTC	2 cut(s)	55, 124
Psp5II	RGGWCCY	1 cut(s)	910
Psp6I	CCWGG	1 cut(s)	201
PspCI	CACGTG	1 cut(s)	906
PspFI	CCCAGC	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	3 cut(s)	43, 807, 911
PspPI	GGNCC	4 cut(s)	42, 205, 806, 910
PspPPI	RGGWCCY	1 cut(s)	910
PstI	CTGCAG	2 cut(s)	228, 709
PstNI	CAGNNNCTG	2 cut(s)	344, 347
PsyI	GACNNNGTC	1 cut(s)	445
PvuII	CAGCTG	3 cut(s)	344, 541, 568
RsaI	GTAC	6 cut(s)	77, 140, 284, 316, 358, 586
RsaNI	GTAC	6 cut(s)	76, 139, 283, 315, 357, 585
SacI	GAGCTC	2 cut(s)	55, 124
SaqAI	TTAA	2 cut(s)	273, 959
SatI	GCNGC	5 cut(s)	339, 342, 345, 566, 705
Sau3AI	GATC	5 cut(s)	10, 516, 535, 879, 891
Sau96I	GGNCC	4 cut(s)	42, 205, 806, 910
SchI	GAGTC	2 cut(s)	426, 599
ScrFI	CCNGG	1 cut(s)	203
SduI	GDGCHC	2 cut(s)	55, 124
SfaNI	GCATC	4 cut(s)	390, 398, 665, 766
SfcI	CTRYAG	2 cut(s)	224, 705
SinI	GGWCC	1 cut(s)	910
SmlI	CTYRAG	1 cut(s)	944
SmoI	CTYRAG	1 cut(s)	944
Sse9I	AATT	3 cut(s)	171, 242, 932
SsiI	CCGC	1 cut(s)	638
SstI	GAGCTC	2 cut(s)	55, 124
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	5 cut(s)	266, 361, 529, 769, 853
TaiI	ACGT	1 cut(s)	908
TaqI	TCGA	1 cut(s)	515
TasI	AATT	3 cut(s)	171, 242, 932
TatI	WGTACW	3 cut(s)	138, 282, 356
TfiI	GAWTC	3 cut(s)	17, 127, 697
Tru1I	TTAA	2 cut(s)	273, 959
Tru9I	TTAA	2 cut(s)	273, 959
TscAI	CASTG	1 cut(s)	816
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	5 cut(s)	338, 341, 344, 565, 704
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	5 cut(s)	183, 235, 726, 732, 747
TspRI	CASTG	1 cut(s)	816
Tth111I	GACNNNGTC	1 cut(s)	445
VpaK11BI	GGWCC	1 cut(s)	910
XagI	CCTNNNNNAGG	1 cut(s)	449
XapI	RAATTY	1 cut(s)	932
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	524
Zsp2I	ATGCAT	1 cut(s)	781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.