Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002958

Physical Location & Seq

Genomic Coordinates Forward (+)

45989209 .. 45992205

Gene Structure 2997 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00424870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGATCTAGAATCTATATCAGAGGCCACTTCAGGAGCCATAGGATCACTGTTGAGCACCACCATTCTGTACCCACTTGACACCTGCAAAACCAGGTACCAAGCTGACGTCAGAGCCAATGATCAGGCCAAGTACAGGAACCTCTCAGATGTATTCTGGGAAGCAATATCCACTCGGCAGGTTCTTTCACTGTATCAGGGTCTGGAAACCAAAAACCTGCAATCCTTCATTTCTCAGTTTGTTTACTTTTATGGGTATAGCTACTTCAAAAGATTATATCTGGAAACCAGCGGCTCTAAATCAATAGGTACAACGGCAAACTTGATCCTTGCTGCTGCTGCTGGGGCTTGCACTGCCATTGCCACCCAGCCTCTGGATACAGCTTCATCAAGGATGCAGACAAGTGCCTTTGGAAAATCCAAAGGGCTGTGGAAGACCCTTACAGAGGGCACCTGGAGTGATGCATTTGATGGTCTTGGAATCTCCCTATTGCTTACTGCGAACCCTGCAATTCAGTATACAGTGTTTGATCAGCTAAAACAAAGACTCCTGAAAGGAAAACAAGATAAATCGGCCAAGGGTTCATCCCCGGAAGCCCTTTCTGCCTTTTCAGCATTTGTTCTAGGTGCAGTCTCAAAAAGTGTTGCTACTGTTTTAACCTATCCTGCCATCAGGTGTAAGGTCATGATCCAAGCTGCTGACCCAGATGATGATGATAAAACCAAGGAAGCCCGCCCAAGGATCCGAAAAACGATTCCAGGAACTCTCAGTGCTATATGGAAAAGGGAAGGGATTCCAGGCTACTTCAAAGGATTGCATGCCCAGATCTTGAAAACTGTTCTGAGCTCCGCATTGCTTTTGATGATCAAGGAAAAATTTCTGCTACTACTTGGGTTCTCATACTTGCAATCAGAAGGTATCTATTCCTCACAAGAGGCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005777 GO:0005778 GO:0005779 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0007275 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009056 GO:0009062 GO:0009791 GO:0009850 GO:0009987 GO:0010817 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016042 GO:0016054 GO:0019395 GO:0019752 GO:0019866 GO:0022857 GO:0030258 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032787 GO:0034220 GO:0034440 GO:0034641 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046483 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0055114 GO:0065007 GO:0065008 GO:0071702 GO:0071704 GO:0071705 GO:0072329 GO:0080024 GO:0090351 GO:0098588 GO:0098656 GO:0098805 GO:1901264 GO:1901360 GO:1901505 GO:1901564 GO:1901575 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

314

Amino Acids

34.34

Weight (kDa)

9.12

Isoelectric Point (pI)

26.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	5 - 95	5.9e-15	Mitochondrial carrier protein
Mito_carr	PF00153	103 - 185	6.1e-08	Mitochondrial carrier protein
Mito_carr	PF00153	200 - 297	1.5e-12	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05290 AT5G27520
fragaria_vesca	FvH4_4g14900 FvH4_6g05760
malus_domestica	MD04G1205900.v1.1 MD12G1220000.v1.1 MD13G1186400.v1.1 MD16G1187100.v1.1
prunus_persica	Prupe.1G154100_v2.0.a1 Prupe.1G154100_v2.0.a1 Prupe.6G326700_v2.0.a1
pyrus_communis	pycom04g18220 pycom12g20540 pycom13g16130 pycom16g15710
rosa_chinensis	RchiOBHm_Chr3g0454671 RchiOBHm_Chr4g0417191 RchiOBHm_Chr4g0417301
rosa_laevigata	RLG00000007919 RLG00000025425
rosa_multiflora	Rmu_sc0000646.1_g000002 Rmu_sc0002129.1_g000048
rosa_roxburghii	Rroxscaffold_5G00361050 Rroxscaffold_6G00424870
rosa_rugosa	Rorug03G0001100.1 Rorug04G0146200 Rorug04G0146600
rosa_samantha	Rh3AG061000 Rh3CG061700 Rh3DG062600 Rh4AG209400 Rh4AG210200 Rh4CG220600 Rh4CG221200 Rh4DG207200 Rh4DG208200
rosa_wichuraiana	Rw3G004750 Rw4G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	92
AatII	GACGTC	1 cut(s)	111
Acc36I	ACCTGC	3 cut(s)	92, 169, 225
Acc65I	GGTACC	1 cut(s)	96
AccB1I	GGYRCC	2 cut(s)	96, 449
AccB7I	CCANNNNNTGG	1 cut(s)	373
AccI	GTMKAC	1 cut(s)	518
AciI	CCGC	3 cut(s)	291, 733, 849
AclWI	GGATC	6 cut(s)	12, 52, 319, 682, 736, 749
AcoI	YGGCCR	1 cut(s)	573
AcsI	RAATTY	1 cut(s)	875
AcuI	CTGAAG	1 cut(s)	15
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	4 cut(s)	71, 98, 134, 310
AfiI	CCNNNNNNNGG	4 cut(s)	135, 373, 445, 738
AgsI	TTSAA	3 cut(s)	268, 808, 832
AjnI	CCWGG	4 cut(s)	92, 452, 757, 796
AluBI	AGCT	6 cut(s)	104, 261, 383, 535, 695, 846
AluI	AGCT	6 cut(s)	104, 261, 383, 535, 695, 846
Alw21I	GWGCWC	2 cut(s)	59, 848
Alw26I	GTCTC	1 cut(s)	637
AlwI	GGATC	6 cut(s)	12, 52, 319, 682, 736, 749
AlwNI	CAGNNNCTG	2 cut(s)	202, 373
AoxI	GGCC	3 cut(s)	24, 126, 573
ApeKI	GCWGC	4 cut(s)	332, 335, 338, 695
ApoI	RAATTY	1 cut(s)	875
Asp700I	GAANNNNTTC	2 cut(s)	792, 876
Asp718I	GGTACC	1 cut(s)	96
AsuC2I	CCSGG	1 cut(s)	590
BaeGI	GKGCMC	1 cut(s)	452
BamHI	GGATCC	1 cut(s)	741
BanI	GGYRCC	2 cut(s)	96, 449
BanII	GRGCYC	1 cut(s)	848
BarI	GAAGNNNNNNTAC	2 cut(s)	248, 280
BbsI	GAAGAC	1 cut(s)	440
Bbv12I	GWGCWC	2 cut(s)	59, 848
BbvI	GCAGC	4 cut(s)	319, 322, 325, 682
BccI	CCATC	2 cut(s)	464, 677
BceAI	ACGGC	1 cut(s)	330
BciT130I	CCWGG	4 cut(s)	94, 454, 759, 798
BciVI	GTATCC	1 cut(s)	370
BclI	TGATCA	3 cut(s)	121, 529, 864
BcnI	CCSGG	1 cut(s)	590
BcoDI	GTCTC	1 cut(s)	637
BfaI	CTAG	2 cut(s)	8, 623
BfuAI	ACCTGC	3 cut(s)	92, 169, 225
BfuI	GTATCC	1 cut(s)	370
BglII	AGATCT	1 cut(s)	825
BisI	GCNGC	5 cut(s)	292, 333, 336, 339, 696
BlsI	GCNGC	5 cut(s)	293, 334, 337, 340, 697
Bme1390I	CCNGG	5 cut(s)	94, 454, 590, 759, 798
BmiI	GGNNCC	5 cut(s)	37, 98, 140, 451, 743
BmrFI	CCNGG	5 cut(s)	94, 454, 590, 759, 798
BmsI	GCATC	2 cut(s)	384, 451
BpiI	GAAGAC	1 cut(s)	440
BpmI	CTGGAG	1 cut(s)	475
BpuMI	CCSGG	1 cut(s)	590
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	4 cut(s)	576, 588, 723, 737
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bsc4I	CCNNNNNNNGG	4 cut(s)	135, 373, 445, 738
Bse3DI	GCAATG	2 cut(s)	357, 851
BseBI	CCWGG	4 cut(s)	94, 454, 759, 798
BseDI	CCNNGG	4 cut(s)	576, 588, 723, 737
BseGI	GGATG	2 cut(s)	399, 584
BseLI	CCNNNNNNNGG	4 cut(s)	135, 373, 445, 738
BseMI	GCAATG	2 cut(s)	357, 851
BseMII	CTCAG	4 cut(s)	159, 248, 781, 833
BseSI	GKGCMC	1 cut(s)	452
BseXI	GCAGC	4 cut(s)	319, 322, 325, 682
BseYI	CCCAGC	2 cut(s)	341, 366
BsgI	GTGCAG	1 cut(s)	648
BshFI	GGCC	3 cut(s)	26, 128, 575
BshNI	GGYRCC	2 cut(s)	96, 449
BsiHKAI	GWGCWC	2 cut(s)	59, 848
BsiSI	CCGG	1 cut(s)	590
BslI	CCNNNNNNNGG	4 cut(s)	135, 373, 445, 738
BsmAI	GTCTC	1 cut(s)	637
BsnI	GGCC	3 cut(s)	26, 128, 575
Bsp1286I	GDGCHC	3 cut(s)	59, 452, 848
Bsp143I	GATC	9 cut(s)	4, 44, 121, 324, 529, 687, 741, 825, 864
BspACI	CCGC	3 cut(s)	291, 733, 849
BspANI	GGCC	3 cut(s)	26, 128, 575
BspCNI	CTCAG	4 cut(s)	158, 247, 780, 834
BspHI	TCATGA	1 cut(s)	684
BspLI	GGNNCC	5 cut(s)	37, 98, 140, 451, 743
BspMI	ACCTGC	3 cut(s)	92, 169, 225
BspPI	GGATC	6 cut(s)	12, 52, 319, 682, 736, 749
BspT107I	GGYRCC	2 cut(s)	96, 449
BsrDI	GCAATG	2 cut(s)	357, 851
BssECI	CCNNGG	4 cut(s)	576, 588, 723, 737
BssMI	GATC	9 cut(s)	4, 44, 121, 324, 529, 687, 741, 825, 864
BssNAI	GTATAC	1 cut(s)	519
BssNI	GRCGYC	1 cut(s)	108
BssT1I	CCWWGG	3 cut(s)	576, 723, 737
Bst1107I	GTATAC	1 cut(s)	519
Bst2UI	CCWGG	4 cut(s)	94, 454, 759, 798
Bst4CI	ACNGT	5 cut(s)	51, 192, 523, 652, 838
BstACI	GRCGYC	1 cut(s)	108
BstC8I	GCNNGC	3 cut(s)	349, 733, 819
BstDEI	CTNAG	4 cut(s)	145, 234, 767, 842
BstENI	CCTNNNNNAGG	1 cut(s)	443
BstF5I	GGATG	2 cut(s)	399, 584
BstKTI	GATC	9 cut(s)	7, 47, 124, 327, 532, 690, 744, 828, 867
BstMAI	GTCTC	1 cut(s)	637
BstMBI	GATC	9 cut(s)	4, 44, 121, 324, 529, 687, 741, 825, 864
BstMWI	GCNNNNNNNGC	6 cut(s)	338, 344, 353, 506, 602, 611
BstNI	CCWGG	4 cut(s)	94, 454, 759, 798
BstNSI	RCATGY	1 cut(s)	821
BstSCI	CCNGG	5 cut(s)	92, 452, 588, 757, 796
BstSLI	GKGCMC	1 cut(s)	452
BstV1I	GCAGC	4 cut(s)	319, 322, 325, 682
BstV2I	GAAGAC	1 cut(s)	440
BstX2I	RGATCY	3 cut(s)	4, 741, 825
BstYI	RGATCY	3 cut(s)	4, 741, 825
BstZ17I	GTATAC	1 cut(s)	519
BsuI	GTATCC	1 cut(s)	370
BsuRI	GGCC	3 cut(s)	26, 128, 575
BtsCI	GGATG	2 cut(s)	399, 584
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	5 cut(s)	47, 188, 351, 528, 775
BveI	ACCTGC	3 cut(s)	92, 169, 225
Cac8I	GCNNGC	3 cut(s)	349, 733, 819
CaiI	CAGNNNCTG	2 cut(s)	202, 373
CciI	TCATGA	1 cut(s)	684
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	4 cut(s)	70, 97, 133, 309
CviAII	CATG	2 cut(s)	685, 818
CviQI	GTAC	4 cut(s)	70, 97, 133, 309
DdeI	CTNAG	4 cut(s)	145, 234, 767, 842
DpnI	GATC	9 cut(s)	6, 46, 123, 326, 531, 689, 743, 827, 866
DpnII	GATC	9 cut(s)	4, 44, 121, 324, 529, 687, 741, 825, 864
EaeI	YGGCCR	1 cut(s)	573
Ecl136II	GAGCTC	1 cut(s)	846
Eco130I	CCWWGG	3 cut(s)	576, 723, 737
Eco24I	GRGCYC	1 cut(s)	848
Eco53kI	GAGCTC	1 cut(s)	846
Eco57I	CTGAAG	1 cut(s)	15
EcoICRI	GAGCTC	1 cut(s)	846
EcoNI	CCTNNNNNAGG	1 cut(s)	443
EcoRII	CCWGG	4 cut(s)	92, 452, 757, 796
EcoT14I	CCWWGG	3 cut(s)	576, 723, 737
EcoT22I	ATGCAT	1 cut(s)	466
EcoT38I	GRGCYC	1 cut(s)	848
ErhI	CCWWGG	3 cut(s)	576, 723, 737
FaeI	CATG	2 cut(s)	688, 821
FatI	CATG	2 cut(s)	684, 817
FauI	CCCGC	1 cut(s)	740
FbaI	TGATCA	3 cut(s)	121, 529, 864
FblI	GTMKAC	1 cut(s)	518
Fnu4HI	GCNGC	5 cut(s)	292, 333, 336, 339, 696
FokI	GGATG	2 cut(s)	406, 571
FriOI	GRGCYC	1 cut(s)	848
Fsp4HI	GCNGC	5 cut(s)	292, 333, 336, 339, 696
FspBI	CTAG	2 cut(s)	8, 623
GluI	GCNGC	5 cut(s)	292, 333, 336, 339, 696
GsaI	CCCAGC	2 cut(s)	345, 370
GsuI	CTGGAG	1 cut(s)	475
HaeIII	GGCC	3 cut(s)	26, 128, 575
HapII	CCGG	1 cut(s)	590
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	688, 821
HinfI	GANTC	5 cut(s)	11, 480, 546, 754, 793
HpaII	CCGG	1 cut(s)	590
Hpy166II	GTNNAC	2 cut(s)	244, 519
Hpy188I	TCNGA	6 cut(s)	22, 113, 148, 746, 843, 913
Hpy188III	TCNNGA	8 cut(s)	8, 33, 203, 281, 374, 550, 685, 829
Hpy8I	GTNNAC	2 cut(s)	244, 519
HpyAV	CCTTC	3 cut(s)	235, 782, 908
HpyCH4III	ACNGT	5 cut(s)	51, 192, 523, 652, 838
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	9 cut(s)	87, 220, 351, 397, 464, 509, 629, 817, 907
HpyF10VI	GCNNNNNNNGC	6 cut(s)	338, 344, 353, 506, 602, 611
HpyF3I	CTNAG	4 cut(s)	145, 234, 767, 842
HpySE526I	ACGT	1 cut(s)	108
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	2 cut(s)	688, 821
KpnI	GGTACC	1 cut(s)	100
Ksp22I	TGATCA	3 cut(s)	121, 529, 864
Kzo9I	GATC	9 cut(s)	4, 44, 121, 324, 529, 687, 741, 825, 864
LmnI	GCTCC	2 cut(s)	35, 851
Lsp1109I	GCAGC	4 cut(s)	319, 322, 325, 682
LweI	GCATC	2 cut(s)	384, 451
MabI	ACCWGGT	1 cut(s)	92
MaeI	CTAG	2 cut(s)	8, 623
MaeII	ACGT	1 cut(s)	108
MalI	GATC	9 cut(s)	6, 46, 123, 326, 531, 689, 743, 827, 866
MboI	GATC	9 cut(s)	4, 44, 121, 324, 529, 687, 741, 825, 864
MboII	GAAGA	1 cut(s)	445
MflI	RGATCY	3 cut(s)	4, 741, 825
MhlI	GDGCHC	3 cut(s)	59, 452, 848
MluCI	AATT	2 cut(s)	510, 875
MlyI	GAGTC	1 cut(s)	540
MnlI	CCTC	6 cut(s)	16, 152, 381, 439, 928, 937
Mph1103I	ATGCAT	1 cut(s)	466
MroXI	GAANNNNTTC	2 cut(s)	792, 876
MseI	TTAA	1 cut(s)	656
MspA1I	CMGCKG	1 cut(s)	291
MspI	CCGG	1 cut(s)	590
MspR9I	CCNGG	5 cut(s)	94, 454, 590, 759, 798
MvaI	CCWGG	4 cut(s)	94, 454, 759, 798
MwoI	GCNNNNNNNGC	6 cut(s)	338, 344, 353, 506, 602, 611
NciI	CCSGG	1 cut(s)	590
NdeII	GATC	9 cut(s)	4, 44, 121, 324, 529, 687, 741, 825, 864
NlaIII	CATG	2 cut(s)	688, 821
NlaIV	GGNNCC	5 cut(s)	37, 98, 140, 451, 743
NmeAIII	GCCGAG	1 cut(s)	154
NsiI	ATGCAT	1 cut(s)	466
NspI	RCATGY	1 cut(s)	821
PaeI	GCATGC	1 cut(s)	821
PagI	TCATGA	1 cut(s)	684
PaqCI	CACCTGC	1 cut(s)	92
PdmI	GAANNNNTTC	2 cut(s)	792, 876
PfeI	GAWTC	4 cut(s)	11, 480, 754, 793
PflMI	CCANNNNNTGG	1 cut(s)	373
PfoI	TCCNGGA	1 cut(s)	757
PkrI	GCNGC	5 cut(s)	293, 334, 337, 340, 697
PleI	GAGTC	1 cut(s)	540
PpsI	GAGTC	1 cut(s)	540
Psp124BI	GAGCTC	1 cut(s)	848
Psp6I	CCWGG	4 cut(s)	92, 452, 757, 796
PspFI	CCCAGC	2 cut(s)	341, 366
PspGI	CCWGG	4 cut(s)	92, 452, 757, 796
PspN4I	GGNNCC	5 cut(s)	37, 98, 140, 451, 743
PstNI	CAGNNNCTG	2 cut(s)	202, 373
PsuI	RGATCY	3 cut(s)	4, 741, 825
RsaI	GTAC	4 cut(s)	71, 98, 134, 310
RsaNI	GTAC	4 cut(s)	70, 97, 133, 309
SacI	GAGCTC	1 cut(s)	848
SaqAI	TTAA	1 cut(s)	656
SatI	GCNGC	5 cut(s)	292, 333, 336, 339, 696
Sau3AI	GATC	9 cut(s)	4, 44, 121, 324, 529, 687, 741, 825, 864
SchI	GAGTC	1 cut(s)	540
ScrFI	CCNGG	5 cut(s)	94, 454, 590, 759, 798
SduI	GDGCHC	3 cut(s)	59, 452, 848
SexAI	ACCWGGT	1 cut(s)	92
SfaNI	GCATC	2 cut(s)	384, 451
SphI	GCATGC	1 cut(s)	821
Sse9I	AATT	2 cut(s)	510, 875
SsiI	CCGC	3 cut(s)	291, 733, 849
SspMI	CTAG	2 cut(s)	8, 623
SstI	GAGCTC	1 cut(s)	848
StyD4I	CCNGG	5 cut(s)	92, 452, 588, 757, 796
StyI	CCWWGG	3 cut(s)	576, 723, 737
TaaI	ACNGT	5 cut(s)	51, 192, 523, 652, 838
TaiI	ACGT	1 cut(s)	111
TasI	AATT	2 cut(s)	510, 875
TatI	WGTACW	1 cut(s)	132
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	4 cut(s)	11, 480, 754, 793
Tru1I	TTAA	1 cut(s)	656
Tru9I	TTAA	1 cut(s)	656
TscAI	CASTG	5 cut(s)	54, 195, 358, 528, 775
TseI	GCWGC	4 cut(s)	332, 335, 338, 695
TspDTI	ATGAA	3 cut(s)	217, 375, 573
TspRI	CASTG	5 cut(s)	54, 195, 358, 528, 775
Van91I	CCANNNNNTGG	1 cut(s)	373
XagI	CCTNNNNNAGG	1 cut(s)	443
XapI	RAATTY	1 cut(s)	875
XbaI	TCTAGA	1 cut(s)	7
XceI	RCATGY	1 cut(s)	821
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
XmiI	GTMKAC	1 cut(s)	518
XmnI	GAANNNNTTC	2 cut(s)	792, 876
XspI	CTAG	2 cut(s)	8, 623
ZraI	GACGTC	1 cut(s)	109
Zsp2I	ATGCAT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.