Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002958

Physical Location & Seq

Genomic Coordinates Forward (+)

40153872 .. 40155788

Gene Structure 1917 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG207200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGGGTTTGATCTTGAATCTGTTGCAGAGGCAACCTCAGGGGCCATTGGAGCTCTGGTCAGCACCACCATCTTGTACCCACTTGATACCTGCAAGACCAAATACCAAGCTGAAGGCCGAGCTCAGAATCCGCTAAGGTACAGGAACATTTCTGATGTTTTCTGGGAAGCAATTTCTACCCGTCAGTTTTTTTTTAAGAGGTTGTACTTGGAGAAAAGTGGAAACAAAACCATGGGTACAAAAGCAAACTTGATAGTTGCAGCAGCTGCTGGAGCTTGCACAGTCATAGTGACAATGCCATTGGATACAGCATCATCAAGGATGCAAACAAGTGAGTTTGGGAAATCCAAAGGACTTTGGAAGACCCTGTCAAAGGGAACTTGGATTGAAGCGTTTGATGGTCTTGGCATATCACTTCTTTTGACTTCTAATCCATCAATCCAGTATACGGTATTTGATCAGCTGAAGCAAAGGCTATTGATTGGGCAGCCGAGCAAAAGAACAGGTACAGAGTCATCTCCAGAAGCTCTTTCTGCTTTCGCTTTGGGTACGGTCTCAAAGTGTATAGCGTCTTGCTTGACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

194

Amino Acids

20.98

Weight (kDa)

9.21

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	6 - 58	3.7e-06	Mitochondrial carrier protein
Mito_carr	PF00153	82 - 159	7e-07	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05290 AT5G27520
fragaria_vesca	FvH4_4g14900 FvH4_6g05760
malus_domestica	MD04G1205900.v1.1 MD12G1220000.v1.1 MD13G1186400.v1.1 MD16G1187100.v1.1
prunus_persica	Prupe.1G154100_v2.0.a1 Prupe.1G154100_v2.0.a1 Prupe.6G326700_v2.0.a1
pyrus_communis	pycom04g18220 pycom12g20540 pycom13g16130 pycom16g15710
rosa_chinensis	RchiOBHm_Chr3g0454671 RchiOBHm_Chr4g0417191 RchiOBHm_Chr4g0417301
rosa_laevigata	RLG00000007919 RLG00000025425
rosa_multiflora	Rmu_sc0000646.1_g000002 Rmu_sc0002129.1_g000048
rosa_roxburghii	Rroxscaffold_5G00361050 Rroxscaffold_6G00424870
rosa_rugosa	Rorug03G0001100.1 Rorug04G0146200 Rorug04G0146600
rosa_samantha	Rh3AG061000 Rh3CG061700 Rh3DG062600 Rh4AG209400 Rh4AG210200 Rh4CG220600 Rh4CG221200 Rh4DG207200 Rh4DG208200
rosa_wichuraiana	Rw3G004750 Rw4G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	98
AccI	GTMKAC	1 cut(s)	446
AciI	CCGC	1 cut(s)	131
AcuI	CTGAAG	2 cut(s)	132, 485
AfaI	GTAC	6 cut(s)	77, 140, 206, 238, 508, 550
AfiI	CCNNNNNNNGG	2 cut(s)	373, 448
AgsI	TTSAA	2 cut(s)	17, 389
AluBI	AGCT	7 cut(s)	53, 110, 122, 266, 275, 463, 527
AluI	AGCT	7 cut(s)	53, 110, 122, 266, 275, 463, 527
Alw21I	GWGCWC	2 cut(s)	55, 124
Alw26I	GTCTC	1 cut(s)	559
AlwNI	CAGNNNCTG	2 cut(s)	266, 269
AoxI	GGCC	2 cut(s)	42, 115
ApeKI	GCWGC	4 cut(s)	260, 263, 266, 487
AspS9I	GGNCC	1 cut(s)	42
AxyI	CCTNAGG	1 cut(s)	37
BanII	GRGCYC	2 cut(s)	55, 124
BbsI	GAAGAC	1 cut(s)	368
Bbv12I	GWGCWC	2 cut(s)	55, 124
BbvI	GCAGC	4 cut(s)	253, 272, 275, 499
BccI	CCATC	3 cut(s)	77, 392, 442
BciVI	GTATCC	1 cut(s)	298
BclI	TGATCA	1 cut(s)	457
BcoDI	GTCTC	1 cut(s)	559
BfuAI	ACCTGC	1 cut(s)	98
BfuI	GTATCC	1 cut(s)	298
BisI	GCNGC	4 cut(s)	261, 264, 267, 488
BlsI	GCNGC	4 cut(s)	262, 265, 268, 489
BmgT120I	GGNCC	1 cut(s)	42
BmiI	GGNNCC	1 cut(s)	43
BmsI	GCATC	2 cut(s)	312, 320
BpiI	GAAGAC	1 cut(s)	368
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	2 cut(s)	291, 504
Bpu10I	CCTNAGC	1 cut(s)	134
BsaI	GGTCTC	1 cut(s)	559
BsaJI	CCNNGG	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	2 cut(s)	373, 448
Bse1I	ACTGG	1 cut(s)	442
Bse21I	CCTNAGG	1 cut(s)	37
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	2 cut(s)	373, 448
BseMII	CTCAG	2 cut(s)	51, 137
BseNI	ACTGG	1 cut(s)	442
BseXI	GCAGC	4 cut(s)	253, 272, 275, 499
BshFI	GGCC	2 cut(s)	44, 117
BsiHKAI	GWGCWC	2 cut(s)	55, 124
BslI	CCNNNNNNNGG	2 cut(s)	373, 448
BsmAI	GTCTC	1 cut(s)	559
BsnI	GGCC	2 cut(s)	44, 117
Bso31I	GGTCTC	1 cut(s)	559
Bsp1286I	GDGCHC	2 cut(s)	55, 124
Bsp143I	GATC	2 cut(s)	10, 457
Bsp19I	CCATGG	1 cut(s)	231
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	2 cut(s)	44, 117
BspCNI	CTCAG	2 cut(s)	50, 136
BspLI	GGNNCC	1 cut(s)	43
BspMI	ACCTGC	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	559
BsrI	ACTGG	1 cut(s)	442
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	2 cut(s)	10, 457
BssNAI	GTATAC	1 cut(s)	447
BssT1I	CCWWGG	1 cut(s)	231
Bst1107I	GTATAC	1 cut(s)	447
Bst4CI	ACNGT	3 cut(s)	283, 451, 553
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	3 cut(s)	37, 123, 134
BstDSI	CCRYGG	1 cut(s)	231
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstF5I	GGATG	1 cut(s)	327
BstKTI	GATC	2 cut(s)	13, 460
BstMAI	GTCTC	1 cut(s)	559
BstMBI	GATC	2 cut(s)	10, 457
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 266, 272, 533
BstV1I	GCAGC	4 cut(s)	253, 272, 275, 499
BstV2I	GAAGAC	1 cut(s)	368
BstZ17I	GTATAC	1 cut(s)	447
Bsu36I	CCTNAGG	1 cut(s)	37
BsuI	GTATCC	1 cut(s)	298
BsuRI	GGCC	2 cut(s)	44, 117
BtgI	CCRYGG	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	327
BveI	ACCTGC	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	277
CaiI	CAGNNNCTG	2 cut(s)	266, 269
Cfr13I	GGNCC	1 cut(s)	42
CseI	GACGC	1 cut(s)	558
Csp6I	GTAC	6 cut(s)	76, 139, 205, 237, 507, 549
CviAII	CATG	1 cut(s)	232
CviQI	GTAC	6 cut(s)	76, 139, 205, 237, 507, 549
DdeI	CTNAG	3 cut(s)	37, 123, 134
DpnI	GATC	2 cut(s)	12, 459
DpnII	GATC	2 cut(s)	10, 457
Ecl136II	GAGCTC	2 cut(s)	53, 122
Eco130I	CCWWGG	1 cut(s)	231
Eco24I	GRGCYC	2 cut(s)	55, 124
Eco31I	GGTCTC	1 cut(s)	559
Eco53kI	GAGCTC	2 cut(s)	53, 122
Eco57I	CTGAAG	2 cut(s)	132, 485
Eco81I	CCTNAGG	1 cut(s)	37
EcoICRI	GAGCTC	2 cut(s)	53, 122
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoT14I	CCWWGG	1 cut(s)	231
EcoT38I	GRGCYC	2 cut(s)	55, 124
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	1 cut(s)	235
FaiI	YATR	5 cut(s)	233, 287, 410, 447, 566
FatI	CATG	1 cut(s)	231
FbaI	TGATCA	1 cut(s)	457
FblI	GTMKAC	1 cut(s)	446
Fnu4HI	GCNGC	4 cut(s)	261, 264, 267, 488
FokI	GGATG	1 cut(s)	334
FriOI	GRGCYC	2 cut(s)	55, 124
Fsp4HI	GCNGC	4 cut(s)	261, 264, 267, 488
GluI	GCNGC	4 cut(s)	261, 264, 267, 488
GsuI	CTGGAG	2 cut(s)	291, 504
HaeIII	GGCC	2 cut(s)	44, 117
HgaI	GACGC	1 cut(s)	558
Hin1II	CATG	1 cut(s)	235
HinfI	GANTC	3 cut(s)	17, 127, 512
Hpy166II	GTNNAC	1 cut(s)	447
Hpy188I	TCNGA	2 cut(s)	126, 154
Hpy188III	TCNNGA	2 cut(s)	14, 521
Hpy8I	GTNNAC	1 cut(s)	447
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	3 cut(s)	283, 451, 553
HpyCH4IV	ACGT	1 cut(s)	581
HpyCH4V	TGCA	5 cut(s)	26, 93, 260, 279, 325
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 266, 272, 533
HpyF3I	CTNAG	3 cut(s)	37, 123, 134
HpySE526I	ACGT	1 cut(s)	581
Hsp92II	CATG	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	2 cut(s)	10, 457
LmnI	GCTCC	2 cut(s)	50, 272
Lsp1109I	GCAGC	4 cut(s)	253, 272, 275, 499
LweI	GCATC	2 cut(s)	312, 320
MaeII	ACGT	1 cut(s)	581
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	2 cut(s)	12, 459
MboI	GATC	2 cut(s)	10, 457
MboII	GAAGA	1 cut(s)	373
MhlI	GDGCHC	2 cut(s)	55, 124
MluCI	AATT	1 cut(s)	171
MlyI	GAGTC	1 cut(s)	521
MnlI	CCTC	3 cut(s)	22, 46, 192
MseI	TTAA	1 cut(s)	195
MspA1I	CMGCKG	2 cut(s)	266, 463
MwoI	GCNNNNNNNGC	4 cut(s)	50, 266, 272, 533
NcoI	CCATGG	1 cut(s)	231
NdeII	GATC	2 cut(s)	10, 457
NlaIII	CATG	1 cut(s)	235
NlaIV	GGNNCC	1 cut(s)	43
NmeAIII	GCCGAG	2 cut(s)	143, 516
NmuCI	GTSAC	1 cut(s)	289
PfeI	GAWTC	2 cut(s)	17, 127
PflFI	GACNNNGTC	1 cut(s)	367
PkrI	GCNGC	4 cut(s)	262, 265, 268, 489
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
Psp124BI	GAGCTC	2 cut(s)	55, 124
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	42
PstNI	CAGNNNCTG	2 cut(s)	266, 269
PsyI	GACNNNGTC	1 cut(s)	367
PvuII	CAGCTG	2 cut(s)	266, 463
RsaI	GTAC	6 cut(s)	77, 140, 206, 238, 508, 550
RsaNI	GTAC	6 cut(s)	76, 139, 205, 237, 507, 549
SacI	GAGCTC	2 cut(s)	55, 124
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	4 cut(s)	261, 264, 267, 488
Sau3AI	GATC	2 cut(s)	10, 457
Sau96I	GGNCC	1 cut(s)	42
SchI	GAGTC	1 cut(s)	521
SduI	GDGCHC	2 cut(s)	55, 124
SfaNI	GCATC	2 cut(s)	312, 320
Sse9I	AATT	1 cut(s)	171
SsiI	CCGC	1 cut(s)	131
SstI	GAGCTC	2 cut(s)	55, 124
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	3 cut(s)	283, 451, 553
TaiI	ACGT	1 cut(s)	584
TasI	AATT	1 cut(s)	171
TatI	WGTACW	1 cut(s)	204
TfiI	GAWTC	2 cut(s)	17, 127
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	4 cut(s)	260, 263, 266, 487
Tsp45I	GTSAC	1 cut(s)	289
Tth111I	GACNNNGTC	1 cut(s)	367
XagI	CCTNNNNNAGG	1 cut(s)	371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.