Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002958

Physical Location & Seq

Genomic Coordinates Forward (+)

41694554 .. 41697773

Gene Structure 3220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00361050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGGGTTTGATCTTGAATCTGTTGCAGAGGCAACCTCAGGGGCCATTGGAGCTCTGGTCAGCACCACCATCTTGTACCCACTTGATACCTGCAAGACCAAATACCAAGCTGAAGTCCGAGCTCAGAATCAGCAAAAGTACAGGAACATTTCTGATGTTTTCTGGGAAGCAATTTCTACCCGTCAGCCATTGGATACAGCATCATCAAGGATGCAAACAAGTGAGTTTGGGAAATCCAAAGGACTCTGGAAGACCCTGTCAGAGGGAACTTGGATTGAGGCGTTTGATGGTCTTGGCATATCACTTCTTTTGACTTCTAACCCATCGATCCAGTATACGGTATTTGATCAGCTGAAGCAAAAGCTATTGATTGGGCAGCTGAGCAAAAGAACAGGTACAGAGTCATCTCCAGAAGCTCTTTCTGCTTTTTGTGCTTTCGCTTTGGGTGCGGTCTCAAAGTGTATTGCATCTTGCTTGACATACCCAGCCATCAGGTGCAAGGTGATGATTCAAGCTGCAGATGAAGATGAAGAAGGTAGCAATGAAGTTCAAGAAAGGTCTCCAAAAACCAAAAAGACAGTTTCAGATGCATTTTATGCCATTTGGAGAAGGGAGGGGCCGCTGGGTTTCTTCAAAGGATTACAGGCTCAGATACTAAAAACTGTTCTAAGCTCGGCATTGCTATTGATGATCAAGGAGAAGATCACAAAGACCACCTGGGTCCTATTGATTGCACTAAAGAAATTTCTCTTTCTCAAGCAAAGCCGATTAAAGAGCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

260

Amino Acids

28.76

Weight (kDa)

9.2

Isoelectric Point (pI)

38.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	6 - 57	1.4e-06	Mitochondrial carrier protein
Mito_carr	PF00153	141 - 237	3.7e-15	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05290 AT5G27520
fragaria_vesca	FvH4_4g14900 FvH4_6g05760
malus_domestica	MD04G1205900.v1.1 MD12G1220000.v1.1 MD13G1186400.v1.1 MD16G1187100.v1.1
prunus_persica	Prupe.1G154100_v2.0.a1 Prupe.1G154100_v2.0.a1 Prupe.6G326700_v2.0.a1
pyrus_communis	pycom04g18220 pycom12g20540 pycom13g16130 pycom16g15710
rosa_chinensis	RchiOBHm_Chr3g0454671 RchiOBHm_Chr4g0417191 RchiOBHm_Chr4g0417301
rosa_laevigata	RLG00000007919 RLG00000025425
rosa_multiflora	Rmu_sc0000646.1_g000002 Rmu_sc0002129.1_g000048
rosa_roxburghii	Rroxscaffold_5G00361050 Rroxscaffold_6G00424870
rosa_rugosa	Rorug03G0001100.1 Rorug04G0146200 Rorug04G0146600
rosa_samantha	Rh3AG061000 Rh3CG061700 Rh3DG062600 Rh4AG209400 Rh4AG210200 Rh4CG220600 Rh4CG221200 Rh4DG207200 Rh4DG208200
rosa_wichuraiana	Rw3G004750 Rw4G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	98
AccI	GTMKAC	1 cut(s)	335
AciI	CCGC	2 cut(s)	449, 620
AclWI	GGATC	1 cut(s)	322
AcsI	RAATTY	1 cut(s)	743
AcuI	CTGAAG	2 cut(s)	132, 374
AfaI	GTAC	3 cut(s)	77, 140, 397
AfeI	AGCGCT	1 cut(s)	778
AfiI	CCNNNNNNNGG	2 cut(s)	262, 337
AgsI	TTSAA	4 cut(s)	17, 512, 551, 634
AjnI	CCWGG	1 cut(s)	716
AluBI	AGCT	9 cut(s)	53, 110, 122, 352, 364, 379, 416, 515, 672
AluI	AGCT	9 cut(s)	53, 110, 122, 352, 364, 379, 416, 515, 672
Alw21I	GWGCWC	2 cut(s)	55, 124
Alw26I	GTCTC	2 cut(s)	457, 564
AlwI	GGATC	1 cut(s)	322
Aor51HI	AGCGCT	1 cut(s)	778
AoxI	GGCC	2 cut(s)	42, 617
ApeKI	GCWGC	2 cut(s)	376, 515
ApoI	RAATTY	1 cut(s)	743
AspLEI	GCGC	1 cut(s)	779
AspS9I	GGNCC	3 cut(s)	42, 617, 721
AsuHPI	GGTGA	1 cut(s)	514
AvaII	GGWCC	1 cut(s)	721
AxyI	CCTNAGG	1 cut(s)	37
BanII	GRGCYC	2 cut(s)	55, 124
BbsI	GAAGAC	1 cut(s)	257
Bbv12I	GWGCWC	2 cut(s)	55, 124
BbvI	GCAGC	2 cut(s)	388, 502
BccI	CCATC	4 cut(s)	77, 281, 331, 497
BciT130I	CCWGG	1 cut(s)	718
BciVI	GTATCC	1 cut(s)	187
BclI	TGATCA	2 cut(s)	346, 690
BcoDI	GTCTC	2 cut(s)	457, 564
BfmI	CTRYAG	1 cut(s)	516
BfoI	RGCGCY	1 cut(s)	780
BfuAI	ACCTGC	1 cut(s)	98
BfuI	GTATCC	1 cut(s)	187
BisI	GCNGC	3 cut(s)	377, 516, 620
BlpI	GCTNAGC	1 cut(s)	380
BlsI	GCNGC	3 cut(s)	378, 517, 621
Bme1390I	CCNGG	1 cut(s)	718
Bme18I	GGWCC	1 cut(s)	721
BmgT120I	GGNCC	3 cut(s)	42, 617, 721
BmiI	GGNNCC	3 cut(s)	43, 618, 722
BmrFI	CCNGG	1 cut(s)	718
BmsI	GCATC	4 cut(s)	201, 209, 476, 577
BpiI	GAAGAC	1 cut(s)	257
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	1 cut(s)	393
Bpu1102I	GCTNAGC	1 cut(s)	380
BpuEI	CTTGAG	1 cut(s)	740
Bsa29I	ATCGAT	1 cut(s)	326
BsaI	GGTCTC	2 cut(s)	457, 564
BsaJI	CCNNGG	1 cut(s)	717
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 337
Bse1I	ACTGG	1 cut(s)	331
Bse21I	CCTNAGG	1 cut(s)	37
Bse3DI	GCAATG	2 cut(s)	547, 677
BseBI	CCWGG	1 cut(s)	718
BseCI	ATCGAT	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	717
BseGI	GGATG	1 cut(s)	216
BseLI	CCNNNNNNNGG	2 cut(s)	262, 337
BseMI	GCAATG	2 cut(s)	547, 677
BseMII	CTCAG	4 cut(s)	51, 137, 371, 662
BseNI	ACTGG	1 cut(s)	331
BseXI	GCAGC	2 cut(s)	388, 502
BseYI	CCCAGC	2 cut(s)	484, 622
BshFI	GGCC	2 cut(s)	44, 619
BshVI	ATCGAT	1 cut(s)	326
BsiHKAI	GWGCWC	2 cut(s)	55, 124
BslI	CCNNNNNNNGG	2 cut(s)	262, 337
BsmAI	GTCTC	2 cut(s)	457, 564
BsnI	GGCC	2 cut(s)	44, 619
Bso31I	GGTCTC	2 cut(s)	457, 564
Bsp1286I	GDGCHC	2 cut(s)	55, 124
Bsp143I	GATC	5 cut(s)	10, 327, 346, 690, 702
Bsp1720I	GCTNAGC	1 cut(s)	380
BspACI	CCGC	2 cut(s)	449, 620
BspANI	GGCC	2 cut(s)	44, 619
BspCNI	CTCAG	4 cut(s)	50, 136, 372, 661
BspDI	ATCGAT	1 cut(s)	326
BspLI	GGNNCC	3 cut(s)	43, 618, 722
BspMAI	CTGCAG	1 cut(s)	520
BspMI	ACCTGC	1 cut(s)	98
BspPI	GGATC	1 cut(s)	322
BspTNI	GGTCTC	2 cut(s)	457, 564
BsrDI	GCAATG	2 cut(s)	547, 677
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	1 cut(s)	717
BssMI	GATC	5 cut(s)	10, 327, 346, 690, 702
BssNAI	GTATAC	1 cut(s)	336
Bst1107I	GTATAC	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	718
Bst4CI	ACNGT	3 cut(s)	340, 580, 664
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstDEI	CTNAG	5 cut(s)	37, 123, 380, 648, 668
BstENI	CCTNNNNNAGG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	216
BstH2I	RGCGCY	1 cut(s)	780
BstHHI	GCGC	1 cut(s)	779
BstKTI	GATC	5 cut(s)	13, 330, 349, 693, 705
BstMAI	GTCTC	2 cut(s)	457, 564
BstMBI	GATC	5 cut(s)	10, 327, 346, 690, 702
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 422, 431, 446, 596
BstNI	CCWGG	1 cut(s)	718
BstSCI	CCNGG	1 cut(s)	716
BstSFI	CTRYAG	1 cut(s)	516
BstV1I	GCAGC	2 cut(s)	388, 502
BstV2I	GAAGAC	1 cut(s)	257
BstZ17I	GTATAC	1 cut(s)	336
Bsu15I	ATCGAT	1 cut(s)	326
Bsu36I	CCTNAGG	1 cut(s)	37
BsuI	GTATCC	1 cut(s)	187
BsuRI	GGCC	2 cut(s)	44, 619
BsuTUI	ATCGAT	1 cut(s)	326
BtsCI	GGATG	1 cut(s)	216
BveI	ACCTGC	1 cut(s)	98
CfoI	GCGC	1 cut(s)	779
Cfr13I	GGNCC	3 cut(s)	42, 617, 721
ClaI	ATCGAT	1 cut(s)	326
Csp6I	GTAC	3 cut(s)	76, 139, 396
CviQI	GTAC	3 cut(s)	76, 139, 396
DdeI	CTNAG	5 cut(s)	37, 123, 380, 648, 668
DpnI	GATC	5 cut(s)	12, 329, 348, 692, 704
DpnII	GATC	5 cut(s)	10, 327, 346, 690, 702
Ecl136II	GAGCTC	2 cut(s)	53, 122
Eco24I	GRGCYC	2 cut(s)	55, 124
Eco31I	GGTCTC	2 cut(s)	457, 564
Eco47I	GGWCC	1 cut(s)	721
Eco47III	AGCGCT	1 cut(s)	778
Eco53kI	GAGCTC	2 cut(s)	53, 122
Eco57I	CTGAAG	2 cut(s)	132, 374
Eco81I	CCTNAGG	1 cut(s)	37
EcoICRI	GAGCTC	2 cut(s)	53, 122
EcoNI	CCTNNNNNAGG	1 cut(s)	260
EcoO109I	RGGNCCY	1 cut(s)	721
EcoRII	CCWGG	1 cut(s)	716
EcoT22I	ATGCAT	1 cut(s)	592
EcoT38I	GRGCYC	2 cut(s)	55, 124
FaiI	YATR	4 cut(s)	299, 336, 481, 597
FbaI	TGATCA	2 cut(s)	346, 690
FblI	GTMKAC	1 cut(s)	335
Fnu4HI	GCNGC	3 cut(s)	377, 516, 620
FokI	GGATG	1 cut(s)	223
FriOI	GRGCYC	2 cut(s)	55, 124
Fsp4HI	GCNGC	3 cut(s)	377, 516, 620
GlaI	GCGC	1 cut(s)	778
GluI	GCNGC	3 cut(s)	377, 516, 620
GsaI	CCCAGC	2 cut(s)	488, 626
GsuI	CTGGAG	1 cut(s)	393
HaeII	RGCGCY	1 cut(s)	780
HaeIII	GGCC	2 cut(s)	44, 619
HhaI	GCGC	1 cut(s)	779
Hin6I	GCGC	1 cut(s)	777
HinP1I	GCGC	1 cut(s)	777
HinfI	GANTC	5 cut(s)	17, 127, 243, 401, 508
HphI	GGTGA	1 cut(s)	514
Hpy166II	GTNNAC	1 cut(s)	336
Hpy188I	TCNGA	6 cut(s)	119, 126, 154, 262, 586, 651
Hpy188III	TCNNGA	4 cut(s)	14, 247, 410, 551
Hpy8I	GTNNAC	1 cut(s)	336
HpyAV	CCTTC	2 cut(s)	527, 603
HpyCH4III	ACNGT	3 cut(s)	340, 580, 664
HpyCH4V	TGCA	8 cut(s)	26, 93, 214, 467, 498, 518, 590, 734
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 422, 431, 446, 596
HpyF3I	CTNAG	5 cut(s)	37, 123, 380, 648, 668
HspAI	GCGC	1 cut(s)	777
Ksp22I	TGATCA	2 cut(s)	346, 690
Kzo9I	GATC	5 cut(s)	10, 327, 346, 690, 702
LmnI	GCTCC	1 cut(s)	50
Lsp1109I	GCAGC	2 cut(s)	388, 502
LweI	GCATC	4 cut(s)	201, 209, 476, 577
MalI	GATC	5 cut(s)	12, 329, 348, 692, 704
MboI	GATC	5 cut(s)	10, 327, 346, 690, 702
MboII	GAAGA	5 cut(s)	262, 536, 542, 622, 712
MhlI	GDGCHC	2 cut(s)	55, 124
MluCI	AATT	2 cut(s)	171, 743
MlyI	GAGTC	2 cut(s)	237, 410
MnlI	CCTC	5 cut(s)	22, 46, 256, 271, 607
Mph1103I	ATGCAT	1 cut(s)	592
MseI	TTAA	1 cut(s)	770
MspA1I	CMGCKG	3 cut(s)	352, 379, 622
MspR9I	CCNGG	1 cut(s)	718
MvaI	CCWGG	1 cut(s)	718
MwoI	GCNNNNNNNGC	5 cut(s)	50, 422, 431, 446, 596
NdeII	GATC	5 cut(s)	10, 327, 346, 690, 702
NlaIV	GGNNCC	3 cut(s)	43, 618, 722
NmeAIII	GCCGAG	1 cut(s)	653
NsiI	ATGCAT	1 cut(s)	592
PfeI	GAWTC	3 cut(s)	17, 127, 508
PflFI	GACNNNGTC	1 cut(s)	256
PkrI	GCNGC	3 cut(s)	378, 517, 621
PleI	GAGTC	2 cut(s)	237, 409
PpsI	GAGTC	2 cut(s)	237, 409
PpuMI	RGGWCCY	1 cut(s)	721
Psp124BI	GAGCTC	2 cut(s)	55, 124
Psp5II	RGGWCCY	1 cut(s)	721
Psp6I	CCWGG	1 cut(s)	716
PspFI	CCCAGC	2 cut(s)	484, 622
PspGI	CCWGG	1 cut(s)	716
PspN4I	GGNNCC	3 cut(s)	43, 618, 722
PspPI	GGNCC	3 cut(s)	42, 617, 721
PspPPI	RGGWCCY	1 cut(s)	721
PstI	CTGCAG	1 cut(s)	520
PsyI	GACNNNGTC	1 cut(s)	256
PvuII	CAGCTG	2 cut(s)	352, 379
RsaI	GTAC	3 cut(s)	77, 140, 397
RsaNI	GTAC	3 cut(s)	76, 139, 396
SacI	GAGCTC	2 cut(s)	55, 124
SaqAI	TTAA	1 cut(s)	770
SatI	GCNGC	3 cut(s)	377, 516, 620
Sau3AI	GATC	5 cut(s)	10, 327, 346, 690, 702
Sau96I	GGNCC	3 cut(s)	42, 617, 721
SchI	GAGTC	2 cut(s)	237, 410
ScrFI	CCNGG	1 cut(s)	718
SduI	GDGCHC	2 cut(s)	55, 124
SfaNI	GCATC	4 cut(s)	201, 209, 476, 577
SfcI	CTRYAG	1 cut(s)	516
SinI	GGWCC	1 cut(s)	721
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
Sse9I	AATT	2 cut(s)	171, 743
SsiI	CCGC	2 cut(s)	449, 620
SstI	GAGCTC	2 cut(s)	55, 124
StyD4I	CCNGG	1 cut(s)	716
TaaI	ACNGT	3 cut(s)	340, 580, 664
TaqI	TCGA	1 cut(s)	326
TasI	AATT	2 cut(s)	171, 743
TatI	WGTACW	1 cut(s)	138
TauI	GCSGC	1 cut(s)	622
TfiI	GAWTC	3 cut(s)	17, 127, 508
Tru1I	TTAA	1 cut(s)	770
Tru9I	TTAA	1 cut(s)	770
TseI	GCWGC	2 cut(s)	376, 515
TspDTI	ATGAA	3 cut(s)	537, 543, 558
Tth111I	GACNNNGTC	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	721
XagI	CCTNNNNNAGG	1 cut(s)	260
XapI	RAATTY	1 cut(s)	743
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	335
Zsp2I	ATGCAT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.