Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002958

Physical Location & Seq

Genomic Coordinates Reverse (-)

3274788 .. 3277866

Gene Structure 3079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g05760.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGATCTAGAGTCTATATCAGAGGCCACTTCGGGAGCCATAGGATCACTGCTGAGCACCACCATTCTGTACCCTCTTGACACCTGCAAAACCAGGTACCAAGCTGACGTCAGAGCCAATGATCAGGCCAAGTACAGGTACCTCTCAGACGTATTCTGGGAAGCAATATCCACGCGGCAGGTTCTTTCACTGTATCAGGGTCTGGAAACAAAAAACCTGCAATCCTTCATTTCTCAGTTCGTTTACTTTTATGGGTATAGCTACTTCAAAAGATTATATCTGGAAACCAGCGGTTCTAAATCAATTGGTACAACAGCAAATTTGATCCTTGCTGCTGCTGCTGGGGCTTGCACTGCCATTGCCACACAGCCTCTGGATACAGCCTCGTCAAGGATGCAGACAACTGCCTTTGGAAAATCCAAAGGGCTGTGGAAGACCCTTACAGAGGGCACCTGGAGTGATGCATTTGATGGTCTTGGAATCTCCCTGTTGCTTACCGCAAACCCTGCAATTCAGTATACAGTGTTTGATCAGCTGAAACAAAGAGTACTGAAGGGAAAACAAGATAAACCATCCAAGGGCTCATCCCCGGAATCCCTTTCTGCCTTTTCAGCATTTGTTCTAGGTGTAAGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005777 GO:0005778 GO:0005779 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0007275 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009056 GO:0009062 GO:0009791 GO:0009850 GO:0009987 GO:0010817 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016042 GO:0016054 GO:0019395 GO:0019752 GO:0019866 GO:0022857 GO:0030258 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032787 GO:0034220 GO:0034440 GO:0034641 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046483 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0055114 GO:0065007 GO:0065008 GO:0071702 GO:0071704 GO:0071705 GO:0072329 GO:0080024 GO:0090351 GO:0098588 GO:0098656 GO:0098805 GO:1901264 GO:1901360 GO:1901505 GO:1901564 GO:1901575 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

213

Amino Acids

23.15

Weight (kDa)

8.97

Isoelectric Point (pI)

30.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	5 - 95	4e-15	Mitochondrial carrier protein
Mito_carr	PF00153	103 - 185	1.1e-07	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05290 AT5G27520
fragaria_vesca	FvH4_4g14900 FvH4_6g05760
malus_domestica	MD04G1205900.v1.1 MD12G1220000.v1.1 MD13G1186400.v1.1 MD16G1187100.v1.1
prunus_persica	Prupe.1G154100_v2.0.a1 Prupe.1G154100_v2.0.a1 Prupe.6G326700_v2.0.a1
pyrus_communis	pycom04g18220 pycom12g20540 pycom13g16130 pycom16g15710
rosa_chinensis	RchiOBHm_Chr3g0454671 RchiOBHm_Chr4g0417191 RchiOBHm_Chr4g0417301
rosa_laevigata	RLG00000007919 RLG00000025425
rosa_multiflora	Rmu_sc0000646.1_g000002 Rmu_sc0002129.1_g000048
rosa_roxburghii	Rroxscaffold_5G00361050 Rroxscaffold_6G00424870
rosa_rugosa	Rorug03G0001100.1 Rorug04G0146200 Rorug04G0146600
rosa_samantha	Rh3AG061000 Rh3CG061700 Rh3DG062600 Rh4AG209400 Rh4AG210200 Rh4CG220600 Rh4CG221200 Rh4DG207200 Rh4DG208200
rosa_wichuraiana	Rw3G004750 Rw4G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	92
AatII	GACGTC	1 cut(s)	111
Acc36I	ACCTGC	3 cut(s)	92, 169, 225
Acc65I	GGTACC	2 cut(s)	96, 138
AccB1I	GGYRCC	3 cut(s)	96, 138, 449
AccI	GTMKAC	1 cut(s)	518
AccII	CGCG	1 cut(s)	175
AciI	CCGC	3 cut(s)	175, 291, 498
AclWI	GGATC	3 cut(s)	12, 52, 319
AcsI	RAATTY	1 cut(s)	319
AcuI	CTGAAG	1 cut(s)	572
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	6 cut(s)	71, 98, 134, 140, 310, 549
AfiI	CCNNNNNNNGG	4 cut(s)	135, 390, 445, 578
AgsI	TTSAA	1 cut(s)	268
AjnI	CCWGG	2 cut(s)	92, 452
AluBI	AGCT	3 cut(s)	104, 261, 535
AluI	AGCT	3 cut(s)	104, 261, 535
Alw21I	GWGCWC	1 cut(s)	59
AlwI	GGATC	3 cut(s)	12, 52, 319
AlwNI	CAGNNNCTG	2 cut(s)	202, 373
AoxI	GGCC	2 cut(s)	24, 126
ApeKI	GCWGC	3 cut(s)	332, 335, 338
ApoI	RAATTY	1 cut(s)	319
Asp718I	GGTACC	2 cut(s)	96, 138
AsuC2I	CCSGG	1 cut(s)	590
BaeGI	GKGCMC	1 cut(s)	452
BanI	GGYRCC	3 cut(s)	96, 138, 449
BanII	GRGCYC	1 cut(s)	584
BarI	GAAGNNNNNNTAC	2 cut(s)	248, 280
BbsI	GAAGAC	1 cut(s)	440
Bbv12I	GWGCWC	1 cut(s)	59
BbvI	GCAGC	3 cut(s)	319, 322, 325
BccI	CCATC	2 cut(s)	464, 580
BciT130I	CCWGG	2 cut(s)	94, 454
BciVI	GTATCC	1 cut(s)	370
BclI	TGATCA	2 cut(s)	121, 529
BcnI	CCSGG	1 cut(s)	590
BfaI	CTAG	2 cut(s)	8, 623
BfuAI	ACCTGC	3 cut(s)	92, 169, 225
BfuI	GTATCC	1 cut(s)	370
BisI	GCNGC	4 cut(s)	176, 333, 336, 339
BlpI	GCTNAGC	1 cut(s)	53
BlsI	GCNGC	4 cut(s)	177, 334, 337, 340
BmcAI	AGTACT	1 cut(s)	549
Bme1390I	CCNGG	3 cut(s)	94, 454, 590
BmiI	GGNNCC	4 cut(s)	37, 98, 140, 451
BmrFI	CCNGG	3 cut(s)	94, 454, 590
BmsI	GCATC	2 cut(s)	384, 451
BpiI	GAAGAC	1 cut(s)	440
BpmI	CTGGAG	1 cut(s)	475
Bpu1102I	GCTNAGC	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	590
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	2 cut(s)	576, 588
Bsc4I	CCNNNNNNNGG	4 cut(s)	135, 390, 445, 578
Bse3DI	GCAATG	1 cut(s)	357
BseBI	CCWGG	2 cut(s)	94, 454
BseDI	CCNNGG	2 cut(s)	576, 588
BseGI	GGATG	3 cut(s)	399, 572, 584
BseLI	CCNNNNNNNGG	4 cut(s)	135, 390, 445, 578
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	3 cut(s)	44, 159, 248
BseSI	GKGCMC	1 cut(s)	452
BseXI	GCAGC	3 cut(s)	319, 322, 325
BseYI	CCCAGC	1 cut(s)	341
Bsh1236I	CGCG	1 cut(s)	175
BshFI	GGCC	2 cut(s)	26, 128
BshNI	GGYRCC	3 cut(s)	96, 138, 449
BsiHKAI	GWGCWC	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	590
BslI	CCNNNNNNNGG	4 cut(s)	135, 390, 445, 578
BsnI	GGCC	2 cut(s)	26, 128
Bsp1286I	GDGCHC	3 cut(s)	59, 452, 584
Bsp143I	GATC	5 cut(s)	4, 44, 121, 324, 529
Bsp1720I	GCTNAGC	1 cut(s)	53
BspACI	CCGC	3 cut(s)	175, 291, 498
BspANI	GGCC	2 cut(s)	26, 128
BspCNI	CTCAG	3 cut(s)	45, 158, 247
BspFNI	CGCG	1 cut(s)	175
BspHI	TCATGA	1 cut(s)	635
BspLI	GGNNCC	4 cut(s)	37, 98, 140, 451
BspMI	ACCTGC	3 cut(s)	92, 169, 225
BspPI	GGATC	3 cut(s)	12, 52, 319
BspT107I	GGYRCC	3 cut(s)	96, 138, 449
BsrDI	GCAATG	1 cut(s)	357
BssECI	CCNNGG	2 cut(s)	576, 588
BssMI	GATC	5 cut(s)	4, 44, 121, 324, 529
BssNAI	GTATAC	1 cut(s)	519
BssNI	GRCGYC	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	576
Bst1107I	GTATAC	1 cut(s)	519
Bst2UI	CCWGG	2 cut(s)	94, 454
Bst4CI	ACNGT	2 cut(s)	192, 523
BstACI	GRCGYC	1 cut(s)	108
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	3 cut(s)	53, 145, 234
BstENI	CCTNNNNNAGG	2 cut(s)	388, 443
BstF5I	GGATG	3 cut(s)	399, 572, 584
BstFNI	CGCG	1 cut(s)	175
BstKTI	GATC	5 cut(s)	7, 47, 124, 327, 532
BstMBI	GATC	5 cut(s)	4, 44, 121, 324, 529
BstMWI	GCNNNNNNNGC	5 cut(s)	338, 344, 353, 506, 611
BstNI	CCWGG	2 cut(s)	94, 454
BstSCI	CCNGG	3 cut(s)	92, 452, 588
BstSLI	GKGCMC	1 cut(s)	452
BstUI	CGCG	1 cut(s)	175
BstV1I	GCAGC	3 cut(s)	319, 322, 325
BstV2I	GAAGAC	1 cut(s)	440
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BstZ17I	GTATAC	1 cut(s)	519
BsuI	GTATCC	1 cut(s)	370
BsuRI	GGCC	2 cut(s)	26, 128
BtsCI	GGATG	3 cut(s)	399, 572, 584
BtsI	GCAGTG	2 cut(s)	47, 351
BtsIMutI	CAGTG	4 cut(s)	47, 188, 351, 528
BveI	ACCTGC	3 cut(s)	92, 169, 225
Cac8I	GCNNGC	1 cut(s)	349
CaiI	CAGNNNCTG	2 cut(s)	202, 373
CciI	TCATGA	1 cut(s)	635
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	6 cut(s)	70, 97, 133, 139, 309, 548
CviAII	CATG	1 cut(s)	636
CviQI	GTAC	6 cut(s)	70, 97, 133, 139, 309, 548
DdeI	CTNAG	3 cut(s)	53, 145, 234
DpnI	GATC	5 cut(s)	6, 46, 123, 326, 531
DpnII	GATC	5 cut(s)	4, 44, 121, 324, 529
Eco130I	CCWWGG	1 cut(s)	576
Eco24I	GRGCYC	1 cut(s)	584
Eco57I	CTGAAG	1 cut(s)	572
EcoNI	CCTNNNNNAGG	2 cut(s)	388, 443
EcoRII	CCWGG	2 cut(s)	92, 452
EcoT14I	CCWWGG	1 cut(s)	576
EcoT22I	ATGCAT	1 cut(s)	466
EcoT38I	GRGCYC	1 cut(s)	584
ErhI	CCWWGG	1 cut(s)	576
FaeI	CATG	1 cut(s)	639
FaiI	YATR	7 cut(s)	17, 41, 252, 258, 277, 519, 637
FatI	CATG	1 cut(s)	635
FbaI	TGATCA	2 cut(s)	121, 529
FblI	GTMKAC	1 cut(s)	518
Fnu4HI	GCNGC	4 cut(s)	176, 333, 336, 339
FokI	GGATG	3 cut(s)	406, 559, 571
FriOI	GRGCYC	1 cut(s)	584
Fsp4HI	GCNGC	4 cut(s)	176, 333, 336, 339
FspBI	CTAG	2 cut(s)	8, 623
GluI	GCNGC	4 cut(s)	176, 333, 336, 339
GsaI	CCCAGC	1 cut(s)	345
GsuI	CTGGAG	1 cut(s)	475
HaeIII	GGCC	2 cut(s)	26, 128
HapII	CCGG	1 cut(s)	590
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	1 cut(s)	639
HinfI	GANTC	3 cut(s)	11, 480, 593
HpaII	CCGG	1 cut(s)	590
Hpy166II	GTNNAC	2 cut(s)	244, 519
Hpy188I	TCNGA	3 cut(s)	22, 113, 148
Hpy188III	TCNNGA	7 cut(s)	8, 33, 77, 203, 281, 374, 636
Hpy8I	GTNNAC	2 cut(s)	244, 519
HpyAV	CCTTC	2 cut(s)	235, 547
HpyCH4III	ACNGT	2 cut(s)	192, 523
HpyCH4IV	ACGT	2 cut(s)	108, 150
HpyCH4V	TGCA	6 cut(s)	87, 220, 351, 397, 464, 509
HpyF10VI	GCNNNNNNNGC	5 cut(s)	338, 344, 353, 506, 611
HpyF3I	CTNAG	3 cut(s)	53, 145, 234
HpySE526I	ACGT	2 cut(s)	108, 150
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	639
KpnI	GGTACC	2 cut(s)	100, 142
Ksp22I	TGATCA	2 cut(s)	121, 529
Kzo9I	GATC	5 cut(s)	4, 44, 121, 324, 529
LmnI	GCTCC	1 cut(s)	35
Lsp1109I	GCAGC	3 cut(s)	319, 322, 325
LweI	GCATC	2 cut(s)	384, 451
MabI	ACCWGGT	1 cut(s)	92
MaeI	CTAG	2 cut(s)	8, 623
MaeII	ACGT	2 cut(s)	108, 150
MalI	GATC	5 cut(s)	6, 46, 123, 326, 531
MboI	GATC	5 cut(s)	4, 44, 121, 324, 529
MboII	GAAGA	1 cut(s)	445
MfeI	CAATTG	1 cut(s)	303
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	3 cut(s)	59, 452, 584
MluCI	AATT	3 cut(s)	303, 319, 510
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	6 cut(s)	16, 84, 152, 381, 394, 439
Mph1103I	ATGCAT	1 cut(s)	466
MspA1I	CMGCKG	2 cut(s)	291, 535
MspI	CCGG	1 cut(s)	590
MspR9I	CCNGG	3 cut(s)	94, 454, 590
MunI	CAATTG	1 cut(s)	303
MvaI	CCWGG	2 cut(s)	94, 454
MvnI	CGCG	1 cut(s)	175
MwoI	GCNNNNNNNGC	5 cut(s)	338, 344, 353, 506, 611
NciI	CCSGG	1 cut(s)	590
NdeII	GATC	5 cut(s)	4, 44, 121, 324, 529
NlaIII	CATG	1 cut(s)	639
NlaIV	GGNNCC	4 cut(s)	37, 98, 140, 451
NsiI	ATGCAT	1 cut(s)	466
PagI	TCATGA	1 cut(s)	635
PaqCI	CACCTGC	1 cut(s)	92
PfeI	GAWTC	2 cut(s)	480, 593
PkrI	GCNGC	4 cut(s)	177, 334, 337, 340
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Psp6I	CCWGG	2 cut(s)	92, 452
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	2 cut(s)	92, 452
PspN4I	GGNNCC	4 cut(s)	37, 98, 140, 451
PstNI	CAGNNNCTG	2 cut(s)	202, 373
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	535
RsaI	GTAC	6 cut(s)	71, 98, 134, 140, 310, 549
RsaNI	GTAC	6 cut(s)	70, 97, 133, 139, 309, 548
SatI	GCNGC	4 cut(s)	176, 333, 336, 339
Sau3AI	GATC	5 cut(s)	4, 44, 121, 324, 529
ScaI	AGTACT	1 cut(s)	549
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	3 cut(s)	94, 454, 590
SduI	GDGCHC	3 cut(s)	59, 452, 584
SexAI	ACCWGGT	1 cut(s)	92
SfaNI	GCATC	2 cut(s)	384, 451
Sse9I	AATT	3 cut(s)	303, 319, 510
SsiI	CCGC	3 cut(s)	175, 291, 498
SspMI	CTAG	2 cut(s)	8, 623
StyD4I	CCNGG	3 cut(s)	92, 452, 588
StyI	CCWWGG	1 cut(s)	576
TaaI	ACNGT	2 cut(s)	192, 523
TaiI	ACGT	2 cut(s)	111, 153
TasI	AATT	3 cut(s)	303, 319, 510
TatI	WGTACW	2 cut(s)	132, 547
TauI	GCSGC	1 cut(s)	178
TfiI	GAWTC	2 cut(s)	480, 593
TscAI	CASTG	4 cut(s)	54, 195, 358, 528
TseI	GCWGC	3 cut(s)	332, 335, 338
TspDTI	ATGAA	1 cut(s)	217
TspRI	CASTG	4 cut(s)	54, 195, 358, 528
XagI	CCTNNNNNAGG	2 cut(s)	388, 443
XapI	RAATTY	1 cut(s)	319
XbaI	TCTAGA	1 cut(s)	7
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
XmiI	GTMKAC	1 cut(s)	518
XspI	CTAG	2 cut(s)	8, 623
ZraI	GACGTC	1 cut(s)	109
ZrmI	AGTACT	1 cut(s)	549
Zsp2I	ATGCAT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.