Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002958

Physical Location & Seq

Genomic Coordinates Reverse (-)

11863834 .. 11866129

Gene Structure 2296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g16130.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGGAATTGATCTGGAATCAGTTGCAGAGGCAACGTCCGGCGCCATTGGAGCTCTGGTCAGCACCACCATCCTGTACCCTCTTGACACCTGCAAGACCAAGTACCAAGCTGAAGTCCGAGCCCACCATCAGCAGAAATACAGGAACATTTCTGATGTGTTATGGGAAGCAATTTCTACCCATCAGGTGCTTTCTTTGTACCAGGGCCTTGGGACAAAGAACTTTCAGTCCTTTATTTCCCAGTTCATCTACTTCTATGGATACAGTTTTTTTAAGAGGTTATACTTGGAGAAAAGTGGAAATAAAAACATGGGAACAAGAGCAAACTTGATGGTTGCAGCCGCTGCCGGGGCTTGTACAGTCATAGTGACACAGCCCTTGGATACAGCATCCTCAAAGATGCAGACAAGTGAGTTTGGGAAATCCAAAGGACTCTGGAAGACGCTTTCAGAGGGGACGTGGATTGAGGCATTTGACGGTCTTGGCATATCTCTTCTTTTGACATCTAACCCATCTATCCAGTACACAGTATTTGATCGAGCTCAAACAAAGGCTTTTGAGAGGACAGCTGAGCAAAAGAACAGGTACAAAGTCATCTCCAGAAGCTCTTTCTGCCCTTTCTGCTTTCGTATTGGGTGCTGTCTCAAAGTGTATTGCATCCTGCTTGACATACCCAGCCATCAGGTGCAAGGTCATGATTCAAGCTGCAGAAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

240

Amino Acids

26.77

Weight (kDa)

9.16

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05290 AT5G27520
fragaria_vesca	FvH4_4g14900 FvH4_6g05760
malus_domestica	MD04G1205900.v1.1 MD12G1220000.v1.1 MD13G1186400.v1.1 MD16G1187100.v1.1
prunus_persica	Prupe.1G154100_v2.0.a1 Prupe.1G154100_v2.0.a1 Prupe.6G326700_v2.0.a1
pyrus_communis	pycom04g18220 pycom12g20540 pycom13g16130 pycom16g15710
rosa_chinensis	RchiOBHm_Chr3g0454671 RchiOBHm_Chr4g0417191 RchiOBHm_Chr4g0417301
rosa_laevigata	RLG00000007919 RLG00000025425
rosa_multiflora	Rmu_sc0000646.1_g000002 Rmu_sc0002129.1_g000048
rosa_roxburghii	Rroxscaffold_5G00361050 Rroxscaffold_6G00424870
rosa_rugosa	Rorug03G0001100.1 Rorug04G0146200 Rorug04G0146600
rosa_samantha	Rh3AG061000 Rh3CG061700 Rh3DG062600 Rh4AG209400 Rh4AG210200 Rh4CG220600 Rh4CG221200 Rh4DG207200 Rh4DG208200
rosa_wichuraiana	Rw3G004750 Rw4G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	98
Acc36I	ACCTGC	1 cut(s)	98
AccB1I	GGYRCC	1 cut(s)	41
AciI	CCGC	1 cut(s)	342
AcuI	CTGAAG	1 cut(s)	132
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	6 cut(s)	77, 104, 200, 358, 524, 587
AfiI	CCNNNNNNNGG	1 cut(s)	348
AgsI	TTSAA	1 cut(s)	702
AjiI	CACGTC	1 cut(s)	459
AjnI	CCWGG	1 cut(s)	201
AloI	GAACNNNNNNTCC	2 cut(s)	212, 244
AluBI	AGCT	6 cut(s)	53, 110, 542, 569, 606, 705
AluI	AGCT	6 cut(s)	53, 110, 542, 569, 606, 705
Alw21I	GWGCWC	2 cut(s)	55, 544
Alw26I	GTCTC	1 cut(s)	647
AlwNI	CAGNNNCTG	1 cut(s)	344
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	3 cut(s)	338, 344, 705
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	205
AsuC2I	CCSGG	1 cut(s)	349
BanI	GGYRCC	1 cut(s)	41
BanII	GRGCYC	3 cut(s)	55, 124, 544
BbsI	GAAGAC	1 cut(s)	446
Bbv12I	GWGCWC	2 cut(s)	55, 544
BbvI	GCAGC	3 cut(s)	331, 350, 692
BccI	CCATC	6 cut(s)	77, 135, 189, 325, 520, 687
BciT130I	CCWGG	1 cut(s)	203
BciVI	GTATCC	2 cut(s)	254, 376
BcnI	CCSGG	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	647
BfmI	CTRYAG	1 cut(s)	706
BfoI	RGCGCY	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	98
BfuI	GTATCC	2 cut(s)	254, 376
BisI	GCNGC	4 cut(s)	339, 342, 345, 706
BlpI	GCTNAGC	1 cut(s)	570
BlsI	GCNGC	4 cut(s)	340, 343, 346, 707
Bme1390I	CCNGG	2 cut(s)	203, 349
BmgBI	CACGTC	1 cut(s)	459
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	2 cut(s)	203, 349
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	3 cut(s)	390, 398, 666
BmuI	ACTGGG	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	446
BpmI	CTGGAG	1 cut(s)	583
Bpu1102I	GCTNAGC	1 cut(s)	570
BpuMI	CCSGG	1 cut(s)	349
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	4 cut(s)	202, 208, 348, 378
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse1I	ACTGG	2 cut(s)	241, 520
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	4 cut(s)	202, 208, 348, 378
BseGI	GGATG	3 cut(s)	69, 389, 657
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	561
BseNI	ACTGG	2 cut(s)	241, 520
BseXI	GCAGC	3 cut(s)	331, 350, 692
BseYI	CCCAGC	1 cut(s)	674
BshFI	GGCC	1 cut(s)	207
BshNI	GGYRCC	1 cut(s)	41
BsiHKAI	GWGCWC	2 cut(s)	55, 544
BsiSI	CCGG	2 cut(s)	39, 348
BslFI	GGGAC	2 cut(s)	226, 469
BslI	CCNNNNNNNGG	1 cut(s)	348
BsmAI	GTCTC	1 cut(s)	647
BsmFI	GGGAC	2 cut(s)	226, 469
BsnI	GGCC	1 cut(s)	207
Bsp1286I	GDGCHC	3 cut(s)	55, 124, 544
Bsp1407I	TGTACA	1 cut(s)	356
Bsp143I	GATC	2 cut(s)	10, 535
Bsp1720I	GCTNAGC	1 cut(s)	570
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	1 cut(s)	562
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	1 cut(s)	43
BspMAI	CTGCAG	1 cut(s)	710
BspMI	ACCTGC	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	41
BsrGI	TGTACA	1 cut(s)	356
BsrI	ACTGG	2 cut(s)	241, 520
BssECI	CCNNGG	4 cut(s)	202, 208, 348, 378
BssMI	GATC	2 cut(s)	10, 535
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	2 cut(s)	208, 378
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	4 cut(s)	266, 361, 479, 529
Bst6I	CTCTTC	1 cut(s)	498
BstACI	GRCGYC	1 cut(s)	42
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstAUI	TGTACA	1 cut(s)	356
BstDEI	CTNAG	1 cut(s)	570
BstF5I	GGATG	3 cut(s)	69, 389, 657
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	2 cut(s)	13, 538
BstMAI	GTCTC	1 cut(s)	647
BstMBI	GATC	2 cut(s)	10, 535
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 344, 350, 612, 621
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	2 cut(s)	201, 347
BstSFI	CTRYAG	1 cut(s)	706
BstV1I	GCAGC	3 cut(s)	331, 350, 692
BstV2I	GAAGAC	1 cut(s)	446
BstXI	CCANNNNNNTGG	1 cut(s)	209
BsuI	GTATCC	2 cut(s)	254, 376
BsuRI	GGCC	1 cut(s)	207
BtrI	CACGTC	1 cut(s)	459
BtsCI	GGATG	3 cut(s)	69, 389, 657
BveI	ACCTGC	1 cut(s)	98
CaiI	CAGNNNCTG	1 cut(s)	344
CciI	TCATGA	1 cut(s)	694
CfoI	GCGC	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	205
CseI	GACGC	1 cut(s)	451
Csp6I	GTAC	6 cut(s)	76, 103, 199, 357, 523, 586
CviAII	CATG	2 cut(s)	310, 695
CviQI	GTAC	6 cut(s)	76, 103, 199, 357, 523, 586
DdeI	CTNAG	1 cut(s)	570
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	2 cut(s)	12, 537
DpnII	GATC	2 cut(s)	10, 535
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Ecl136II	GAGCTC	2 cut(s)	53, 542
Eco130I	CCWWGG	2 cut(s)	208, 378
Eco24I	GRGCYC	3 cut(s)	55, 124, 544
Eco53kI	GAGCTC	2 cut(s)	53, 542
Eco57I	CTGAAG	1 cut(s)	132
EcoICRI	GAGCTC	2 cut(s)	53, 542
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	201
EcoT14I	CCWWGG	2 cut(s)	208, 378
EcoT38I	GRGCYC	3 cut(s)	55, 124, 544
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
ErhI	CCWWGG	2 cut(s)	208, 378
FaeI	CATG	2 cut(s)	313, 698
FaiI	YATR	8 cut(s)	163, 258, 283, 311, 365, 488, 671, 696
FaqI	GGGAC	2 cut(s)	226, 469
FatI	CATG	2 cut(s)	309, 694
Fnu4HI	GCNGC	4 cut(s)	339, 342, 345, 706
FokI	GGATG	3 cut(s)	56, 376, 644
FriOI	GRGCYC	3 cut(s)	55, 124, 544
Fsp4HI	GCNGC	4 cut(s)	339, 342, 345, 706
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	4 cut(s)	339, 342, 345, 706
GsaI	CCCAGC	1 cut(s)	678
GsuI	CTGGAG	1 cut(s)	583
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	2 cut(s)	39, 348
HgaI	GACGC	1 cut(s)	451
HhaI	GCGC	1 cut(s)	44
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	313, 698
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HinfI	GANTC	3 cut(s)	17, 432, 698
HpaII	CCGG	2 cut(s)	39, 348
Hpy166II	GTNNAC	1 cut(s)	525
Hpy188I	TCNGA	3 cut(s)	119, 154, 451
Hpy188III	TCNNGA	5 cut(s)	14, 83, 436, 600, 695
Hpy8I	GTNNAC	1 cut(s)	525
HpyCH4III	ACNGT	4 cut(s)	266, 361, 479, 529
HpyCH4IV	ACGT	2 cut(s)	35, 458
HpyCH4V	TGCA	7 cut(s)	26, 93, 338, 403, 657, 688, 708
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 344, 350, 612, 621
HpyF3I	CTNAG	1 cut(s)	570
HpySE526I	ACGT	2 cut(s)	35, 458
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	313, 698
HspAI	GCGC	1 cut(s)	42
KasI	GGCGCC	1 cut(s)	41
Kzo9I	GATC	2 cut(s)	10, 535
LmnI	GCTCC	1 cut(s)	50
Lsp1109I	GCAGC	3 cut(s)	331, 350, 692
LweI	GCATC	3 cut(s)	390, 398, 666
MaeII	ACGT	2 cut(s)	35, 458
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	2 cut(s)	12, 537
MboI	GATC	2 cut(s)	10, 535
MboII	GAAGA	2 cut(s)	451, 485
MhlI	GDGCHC	3 cut(s)	55, 124, 544
MluCI	AATT	2 cut(s)	6, 171
Mly113I	GGCGCC	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	426
MnlI	CCTC	7 cut(s)	22, 90, 270, 403, 445, 460, 555
MseI	TTAA	1 cut(s)	273
MspA1I	CMGCKG	2 cut(s)	344, 569
MspI	CCGG	2 cut(s)	39, 348
MspR9I	CCNGG	2 cut(s)	203, 349
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	5 cut(s)	50, 344, 350, 612, 621
NarI	GGCGCC	1 cut(s)	42
NciI	CCSGG	1 cut(s)	349
NdeII	GATC	2 cut(s)	10, 535
NlaIII	CATG	2 cut(s)	313, 698
NlaIV	GGNNCC	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	367
PagI	TCATGA	1 cut(s)	694
PaqCI	CACCTGC	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	17, 698
PkrI	GCNGC	4 cut(s)	340, 343, 346, 707
PleI	GAGTC	1 cut(s)	426
PluTI	GGCGCC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	426
Psp124BI	GAGCTC	2 cut(s)	55, 544
Psp6I	CCWGG	1 cut(s)	201
PspFI	CCCAGC	1 cut(s)	674
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	205
PstI	CTGCAG	1 cut(s)	710
PstNI	CAGNNNCTG	1 cut(s)	344
PvuII	CAGCTG	1 cut(s)	569
RsaI	GTAC	6 cut(s)	77, 104, 200, 358, 524, 587
RsaNI	GTAC	6 cut(s)	76, 103, 199, 357, 523, 586
SacI	GAGCTC	2 cut(s)	55, 544
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	4 cut(s)	339, 342, 345, 706
Sau3AI	GATC	2 cut(s)	10, 535
Sau96I	GGNCC	1 cut(s)	205
SchI	GAGTC	1 cut(s)	426
ScrFI	CCNGG	2 cut(s)	203, 349
SduI	GDGCHC	3 cut(s)	55, 124, 544
SfaNI	GCATC	3 cut(s)	390, 398, 666
SfcI	CTRYAG	1 cut(s)	706
SfoI	GGCGCC	1 cut(s)	43
Sse9I	AATT	2 cut(s)	6, 171
SsiI	CCGC	1 cut(s)	342
SspDI	GGCGCC	1 cut(s)	41
SstI	GAGCTC	2 cut(s)	55, 544
StyD4I	CCNGG	2 cut(s)	201, 347
StyI	CCWWGG	2 cut(s)	208, 378
TaaI	ACNGT	4 cut(s)	266, 361, 479, 529
TaiI	ACGT	2 cut(s)	38, 461
TaqI	TCGA	1 cut(s)	538
TasI	AATT	2 cut(s)	6, 171
TatI	WGTACW	2 cut(s)	356, 522
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	2 cut(s)	17, 698
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	3 cut(s)	338, 344, 705
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	1 cut(s)	235
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.