Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002958

Physical Location & Seq

Genomic Coordinates Forward (+)

39927232 .. 39929671

Gene Structure 2440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G017760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGGGTTTGATCTTGAATCTGTTGCAGAGGCAACCTCAGGGGCCATTGGAGCTCTGGTCAGCACCACCATCTTGTACCCACTTGATACCTGCAAGACCAAATACCAAGCTGAAGTCCGAGCTCAGAATCAGCTAAAGTACAGGAACATTTCTGATGTTTTCTGGGAAGCAATTTCTACCCGTCAGGTGCTTTCATTATACCAGGGCCTTGGGACAAAGAACCTGCAGTCCTTTATTTCACAATTCATCTACTTCTATGGATACAGTTTTTTTAAAAGGTTGTACTTGGAGAAAAGTGGAAACAAAATCATGGGTACAAAAGCAAACTTGATAGTTGCAGCAGCTGCTGGAGCTTGTACAGTCATAGTGACAATGGCGAGTCATCGTACATTTTCATTTTCACCATTGGATACAGCATCATCAAGGATGCAAACAAGTGAGTTTGGGAAATCCAAAGGACTCTGGAAGACCCTGTCAGAGGGAACTTGGATTGAGGCATTTGATGGTCTTGGCATATCACTTCTTTTGACTTCTAACCCATCGATCCAGTATACGGTATTTGATCAGCTGAAGCAAAAGCTATTGATTGCGCAGCTGAGCAAAAGAACTGGTACAGAGTCATCTCCAGTAGCTCTTTCTGCTTTTTCTGCTTTCGCTTTGGGTGCGGTCTCAAAGTGTATCGCATCTTGCTTGACATACCCAGCCATCAGGTGCAAGGTGATGATTCAAGCTGCAGATGAAGATGAAGAAGGTAGCAATGAAGTTCAAGAAAGGTCTCCAAAAACCAAAAAGACAGTTTCAGATGCATTTTATGCCATTTGGAGAAGGGAGGGGCCACTGGGTTTCTTCAAAGGATTACAGGCTCAGATACTAAAAACTGTTCTAAGCTCGGCATTGCTATTGATGATCAAGGAGAAGATCACAAAAACCACCTGGGTCCTATTGATTGCACTAAAGAAATTTCTCTTTCTCAAGCAAAGCCGATTAAAGAGCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

332

Amino Acids

36.67

Weight (kDa)

9.54

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	6 - 98	1.3e-15	Mitochondrial carrier protein
Mito_carr	PF00153	212 - 309	3.2e-15	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05290 AT5G27520
fragaria_vesca	FvH4_4g14900 FvH4_6g05760
malus_domestica	MD04G1205900.v1.1 MD12G1220000.v1.1 MD13G1186400.v1.1 MD16G1187100.v1.1
prunus_persica	Prupe.1G154100_v2.0.a1 Prupe.1G154100_v2.0.a1 Prupe.6G326700_v2.0.a1
pyrus_communis	pycom04g18220 pycom12g20540 pycom13g16130 pycom16g15710
rosa_chinensis	RchiOBHm_Chr3g0454671 RchiOBHm_Chr4g0417191 RchiOBHm_Chr4g0417301
rosa_laevigata	RLG00000007919 RLG00000025425
rosa_multiflora	Rmu_sc0000646.1_g000002 Rmu_sc0002129.1_g000048
rosa_roxburghii	Rroxscaffold_5G00361050 Rroxscaffold_6G00424870
rosa_rugosa	Rorug03G0001100.1 Rorug04G0146200 Rorug04G0146600
rosa_samantha	Rh3AG061000 Rh3CG061700 Rh3DG062600 Rh4AG209400 Rh4AG210200 Rh4CG220600 Rh4CG221200 Rh4DG207200 Rh4DG208200
rosa_wichuraiana	Rw3G004750 Rw4G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	591
Acc36I	ACCTGC	2 cut(s)	98, 231
AccI	GTMKAC	1 cut(s)	551
AciI	CCGC	1 cut(s)	665
AclWI	GGATC	1 cut(s)	538
AcsI	RAATTY	1 cut(s)	959
AcuI	CTGAAG	2 cut(s)	132, 590
AfaI	GTAC	7 cut(s)	77, 140, 284, 316, 358, 388, 613
AfeI	AGCGCT	1 cut(s)	994
AfiI	CCNNNNNNNGG	2 cut(s)	478, 553
AgsI	TTSAA	4 cut(s)	17, 728, 767, 850
AjnI	CCWGG	2 cut(s)	201, 932
AloI	GAACNNNNNNTCC	2 cut(s)	212, 244
Alw21I	GWGCWC	2 cut(s)	55, 124
Alw26I	GTCTC	2 cut(s)	673, 780
AlwI	GGATC	1 cut(s)	538
AlwNI	CAGNNNCTG	2 cut(s)	344, 347
Aor51HI	AGCGCT	1 cut(s)	994
AoxI	GGCC	3 cut(s)	42, 205, 833
ApeKI	GCWGC	5 cut(s)	338, 341, 344, 592, 731
ApoI	RAATTY	1 cut(s)	959
AspLEI	GCGC	2 cut(s)	592, 995
AspS9I	GGNCC	4 cut(s)	42, 205, 833, 937
AsuHPI	GGTGA	2 cut(s)	393, 730
AvaII	GGWCC	1 cut(s)	937
AxyI	CCTNAGG	1 cut(s)	37
BanII	GRGCYC	2 cut(s)	55, 124
BbsI	GAAGAC	1 cut(s)	473
Bbv12I	GWGCWC	2 cut(s)	55, 124
BbvI	GCAGC	5 cut(s)	331, 350, 353, 604, 718
BccI	CCATC	4 cut(s)	77, 497, 547, 713
BciT130I	CCWGG	2 cut(s)	203, 934
BciVI	GTATCC	2 cut(s)	254, 403
BclI	TGATCA	2 cut(s)	562, 906
BcoDI	GTCTC	2 cut(s)	673, 780
BfmI	CTRYAG	2 cut(s)	224, 732
BfoI	RGCGCY	1 cut(s)	996
BfuAI	ACCTGC	2 cut(s)	98, 231
BfuI	GTATCC	2 cut(s)	254, 403
BisI	GCNGC	5 cut(s)	339, 342, 345, 593, 732
BlpI	GCTNAGC	1 cut(s)	596
BlsI	GCNGC	5 cut(s)	340, 343, 346, 594, 733
Bme1390I	CCNGG	2 cut(s)	203, 934
Bme18I	GGWCC	1 cut(s)	937
BmgT120I	GGNCC	4 cut(s)	42, 205, 833, 937
BmiI	GGNNCC	3 cut(s)	43, 834, 938
BmrFI	CCNGG	2 cut(s)	203, 934
BmrI	ACTGGG	1 cut(s)	848
BmsI	GCATC	4 cut(s)	417, 425, 692, 793
BmuI	ACTGGG	1 cut(s)	848
BpiI	GAAGAC	1 cut(s)	473
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	2 cut(s)	369, 609
Bpu1102I	GCTNAGC	1 cut(s)	596
BpuEI	CTTGAG	1 cut(s)	956
Bsa29I	ATCGAT	1 cut(s)	542
BsaI	GGTCTC	2 cut(s)	673, 780
BsaJI	CCNNGG	3 cut(s)	202, 208, 933
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	2 cut(s)	478, 553
Bse1I	ACTGG	4 cut(s)	547, 613, 626, 843
Bse21I	CCTNAGG	1 cut(s)	37
Bse3DI	GCAATG	2 cut(s)	763, 893
BseBI	CCWGG	2 cut(s)	203, 934
BseCI	ATCGAT	1 cut(s)	542
BseDI	CCNNGG	3 cut(s)	202, 208, 933
BseGI	GGATG	1 cut(s)	432
BseLI	CCNNNNNNNGG	2 cut(s)	478, 553
BseMI	GCAATG	2 cut(s)	763, 893
BseMII	CTCAG	4 cut(s)	51, 137, 587, 878
BseNI	ACTGG	4 cut(s)	547, 613, 626, 843
BseXI	GCAGC	5 cut(s)	331, 350, 353, 604, 718
BseYI	CCCAGC	1 cut(s)	700
BshFI	GGCC	3 cut(s)	44, 207, 835
BshVI	ATCGAT	1 cut(s)	542
BsiHKAI	GWGCWC	2 cut(s)	55, 124
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	2 cut(s)	478, 553
BsmAI	GTCTC	2 cut(s)	673, 780
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	3 cut(s)	44, 207, 835
Bso31I	GGTCTC	2 cut(s)	673, 780
Bsp1286I	GDGCHC	2 cut(s)	55, 124
Bsp1407I	TGTACA	1 cut(s)	356
Bsp143I	GATC	5 cut(s)	10, 543, 562, 906, 918
Bsp1720I	GCTNAGC	1 cut(s)	596
BspACI	CCGC	1 cut(s)	665
BspANI	GGCC	3 cut(s)	44, 207, 835
BspCNI	CTCAG	4 cut(s)	50, 136, 588, 877
BspDI	ATCGAT	1 cut(s)	542
BspLI	GGNNCC	3 cut(s)	43, 834, 938
BspMAI	CTGCAG	2 cut(s)	228, 736
BspMI	ACCTGC	2 cut(s)	98, 231
BspPI	GGATC	1 cut(s)	538
BspTNI	GGTCTC	2 cut(s)	673, 780
BsrDI	GCAATG	2 cut(s)	763, 893
BsrGI	TGTACA	1 cut(s)	356
BsrI	ACTGG	4 cut(s)	547, 613, 626, 843
BssECI	CCNNGG	3 cut(s)	202, 208, 933
BssMI	GATC	5 cut(s)	10, 543, 562, 906, 918
BssNAI	GTATAC	1 cut(s)	552
BssT1I	CCWWGG	1 cut(s)	208
Bst1107I	GTATAC	1 cut(s)	552
Bst2UI	CCWGG	2 cut(s)	203, 934
Bst4CI	ACNGT	5 cut(s)	266, 361, 556, 796, 880
BstAPI	GCANNNNNTGC	2 cut(s)	344, 812
BstAUI	TGTACA	1 cut(s)	356
BstDEI	CTNAG	5 cut(s)	37, 123, 596, 864, 884
BstENI	CCTNNNNNAGG	1 cut(s)	476
BstF5I	GGATG	1 cut(s)	432
BstH2I	RGCGCY	1 cut(s)	996
BstHHI	GCGC	2 cut(s)	592, 995
BstKTI	GATC	5 cut(s)	13, 546, 565, 909, 921
BstMAI	GTCTC	2 cut(s)	673, 780
BstMBI	GATC	5 cut(s)	10, 543, 562, 906, 918
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 344, 350, 638, 647, 662, 812
BstNI	CCWGG	2 cut(s)	203, 934
BstSCI	CCNGG	2 cut(s)	201, 932
BstSFI	CTRYAG	2 cut(s)	224, 732
BstV1I	GCAGC	5 cut(s)	331, 350, 353, 604, 718
BstV2I	GAAGAC	1 cut(s)	473
BstXI	CCANNNNNNTGG	1 cut(s)	209
BstZ17I	GTATAC	1 cut(s)	552
Bsu15I	ATCGAT	1 cut(s)	542
Bsu36I	CCTNAGG	1 cut(s)	37
BsuI	GTATCC	2 cut(s)	254, 403
BsuRI	GGCC	3 cut(s)	44, 207, 835
BsuTUI	ATCGAT	1 cut(s)	542
BtsCI	GGATG	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	836
BveI	ACCTGC	2 cut(s)	98, 231
CaiI	CAGNNNCTG	2 cut(s)	344, 347
CfoI	GCGC	2 cut(s)	592, 995
Cfr13I	GGNCC	4 cut(s)	42, 205, 833, 937
ClaI	ATCGAT	1 cut(s)	542
Csp6I	GTAC	7 cut(s)	76, 139, 283, 315, 357, 387, 612
CviAII	CATG	1 cut(s)	310
CviQI	GTAC	7 cut(s)	76, 139, 283, 315, 357, 387, 612
DdeI	CTNAG	5 cut(s)	37, 123, 596, 864, 884
DpnI	GATC	5 cut(s)	12, 545, 564, 908, 920
DpnII	GATC	5 cut(s)	10, 543, 562, 906, 918
DraI	TTTAAA	1 cut(s)	274
Ecl136II	GAGCTC	2 cut(s)	53, 122
Eco130I	CCWWGG	1 cut(s)	208
Eco24I	GRGCYC	2 cut(s)	55, 124
Eco31I	GGTCTC	2 cut(s)	673, 780
Eco47I	GGWCC	1 cut(s)	937
Eco47III	AGCGCT	1 cut(s)	994
Eco53kI	GAGCTC	2 cut(s)	53, 122
Eco57I	CTGAAG	2 cut(s)	132, 590
Eco81I	CCTNAGG	1 cut(s)	37
EcoICRI	GAGCTC	2 cut(s)	53, 122
EcoNI	CCTNNNNNAGG	1 cut(s)	476
EcoO109I	RGGNCCY	2 cut(s)	205, 937
EcoRII	CCWGG	2 cut(s)	201, 932
EcoT14I	CCWWGG	1 cut(s)	208
EcoT22I	ATGCAT	1 cut(s)	808
EcoT38I	GRGCYC	2 cut(s)	55, 124
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	1 cut(s)	313
FaiI	YATR	8 cut(s)	199, 258, 311, 365, 515, 552, 697, 813
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	1 cut(s)	309
FbaI	TGATCA	2 cut(s)	562, 906
FblI	GTMKAC	1 cut(s)	551
Fnu4HI	GCNGC	5 cut(s)	339, 342, 345, 593, 732
FokI	GGATG	1 cut(s)	439
FriOI	GRGCYC	2 cut(s)	55, 124
Fsp4HI	GCNGC	5 cut(s)	339, 342, 345, 593, 732
FspI	TGCGCA	1 cut(s)	591
GlaI	GCGC	2 cut(s)	591, 994
GluI	GCNGC	5 cut(s)	339, 342, 345, 593, 732
GsaI	CCCAGC	1 cut(s)	704
GsuI	CTGGAG	2 cut(s)	369, 609
HaeII	RGCGCY	1 cut(s)	996
HaeIII	GGCC	3 cut(s)	44, 207, 835
HhaI	GCGC	2 cut(s)	592, 995
Hin1II	CATG	1 cut(s)	313
Hin6I	GCGC	2 cut(s)	590, 993
HinP1I	GCGC	2 cut(s)	590, 993
HinfI	GANTC	6 cut(s)	17, 127, 379, 459, 617, 724
HphI	GGTGA	2 cut(s)	393, 730
Hpy166II	GTNNAC	1 cut(s)	552
Hpy188I	TCNGA	6 cut(s)	119, 126, 154, 478, 802, 867
Hpy188III	TCNNGA	3 cut(s)	14, 463, 767
Hpy8I	GTNNAC	1 cut(s)	552
HpyAV	CCTTC	2 cut(s)	743, 819
HpyCH4III	ACNGT	5 cut(s)	266, 361, 556, 796, 880
HpyCH4V	TGCA	9 cut(s)	26, 93, 226, 338, 430, 714, 734, 806, 950
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 344, 350, 638, 647, 662, 812
HpyF3I	CTNAG	5 cut(s)	37, 123, 596, 864, 884
Hsp92II	CATG	1 cut(s)	313
HspAI	GCGC	2 cut(s)	590, 993
Ksp22I	TGATCA	2 cut(s)	562, 906
Kzo9I	GATC	5 cut(s)	10, 543, 562, 906, 918
LmnI	GCTCC	2 cut(s)	50, 350
Lsp1109I	GCAGC	5 cut(s)	331, 350, 353, 604, 718
LweI	GCATC	4 cut(s)	417, 425, 692, 793
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	5 cut(s)	12, 545, 564, 908, 920
MboI	GATC	5 cut(s)	10, 543, 562, 906, 918
MboII	GAAGA	5 cut(s)	478, 752, 758, 838, 928
MhlI	GDGCHC	2 cut(s)	55, 124
MluCI	AATT	3 cut(s)	171, 242, 959
MlyI	GAGTC	3 cut(s)	388, 453, 626
MnlI	CCTC	5 cut(s)	22, 46, 472, 487, 823
Mph1103I	ATGCAT	1 cut(s)	808
MseI	TTAA	2 cut(s)	273, 986
MspA1I	CMGCKG	3 cut(s)	344, 568, 595
MspR9I	CCNGG	2 cut(s)	203, 934
MvaI	CCWGG	2 cut(s)	203, 934
MwoI	GCNNNNNNNGC	7 cut(s)	50, 344, 350, 638, 647, 662, 812
NdeII	GATC	5 cut(s)	10, 543, 562, 906, 918
NlaIII	CATG	1 cut(s)	313
NlaIV	GGNNCC	3 cut(s)	43, 834, 938
NmeAIII	GCCGAG	1 cut(s)	869
NmuCI	GTSAC	1 cut(s)	367
NsbI	TGCGCA	1 cut(s)	591
NsiI	ATGCAT	1 cut(s)	808
PfeI	GAWTC	3 cut(s)	17, 127, 724
PflFI	GACNNNGTC	1 cut(s)	472
PkrI	GCNGC	5 cut(s)	340, 343, 346, 594, 733
PleI	GAGTC	3 cut(s)	387, 453, 625
PpsI	GAGTC	3 cut(s)	387, 453, 625
PpuMI	RGGWCCY	1 cut(s)	937
Psp124BI	GAGCTC	2 cut(s)	55, 124
Psp5II	RGGWCCY	1 cut(s)	937
Psp6I	CCWGG	2 cut(s)	201, 932
PspFI	CCCAGC	1 cut(s)	700
PspGI	CCWGG	2 cut(s)	201, 932
PspN4I	GGNNCC	3 cut(s)	43, 834, 938
PspPI	GGNCC	4 cut(s)	42, 205, 833, 937
PspPPI	RGGWCCY	1 cut(s)	937
PstI	CTGCAG	2 cut(s)	228, 736
PstNI	CAGNNNCTG	2 cut(s)	344, 347
PsyI	GACNNNGTC	1 cut(s)	472
PvuII	CAGCTG	3 cut(s)	344, 568, 595
RsaI	GTAC	7 cut(s)	77, 140, 284, 316, 358, 388, 613
RsaNI	GTAC	7 cut(s)	76, 139, 283, 315, 357, 387, 612
SacI	GAGCTC	2 cut(s)	55, 124
SaqAI	TTAA	2 cut(s)	273, 986
SatI	GCNGC	5 cut(s)	339, 342, 345, 593, 732
Sau3AI	GATC	5 cut(s)	10, 543, 562, 906, 918
Sau96I	GGNCC	4 cut(s)	42, 205, 833, 937
SchI	GAGTC	3 cut(s)	388, 453, 626
ScrFI	CCNGG	2 cut(s)	203, 934
SduI	GDGCHC	2 cut(s)	55, 124
SfaNI	GCATC	4 cut(s)	417, 425, 692, 793
SfcI	CTRYAG	2 cut(s)	224, 732
SinI	GGWCC	1 cut(s)	937
SmlI	CTYRAG	1 cut(s)	971
SmoI	CTYRAG	1 cut(s)	971
Sse9I	AATT	3 cut(s)	171, 242, 959
SsiI	CCGC	1 cut(s)	665
SstI	GAGCTC	2 cut(s)	55, 124
StyD4I	CCNGG	2 cut(s)	201, 932
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	5 cut(s)	266, 361, 556, 796, 880
TaqI	TCGA	1 cut(s)	542
TasI	AATT	3 cut(s)	171, 242, 959
TatI	WGTACW	3 cut(s)	138, 282, 356
TfiI	GAWTC	3 cut(s)	17, 127, 724
Tru1I	TTAA	2 cut(s)	273, 986
Tru9I	TTAA	2 cut(s)	273, 986
TscAI	CASTG	1 cut(s)	843
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	5 cut(s)	338, 341, 344, 592, 731
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	6 cut(s)	183, 235, 384, 753, 759, 774
TspRI	CASTG	1 cut(s)	843
Tth111I	GACNNNGTC	1 cut(s)	472
VpaK11BI	GGWCC	1 cut(s)	937
XagI	CCTNNNNNAGG	1 cut(s)	476
XapI	RAATTY	1 cut(s)	959
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	551
Zsp2I	ATGCAT	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.