RchiOBHm_Chr3g0454671

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
4681808 .. 4684737
2930 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42167

Sequence Viewer

Length: 1173 bp
ATGAAAAATACAAATCAATCGGGCGACGGCAAAACAAAGCACGTTTTTTCAAAGTGCCAAGAAGACGCCACCGGATCGGACCTCCCCTCTCTGTTTCCTTCAACTTTTCAACGTCCCCCACACTCCCTATATAAACAGACACAATTTTATAAGTTACGTGCTGGTTTTGAAAATAAGCAAATAATTAAGACGAAGAAGAAGAAGAAGAAGATCAGGATGGATCTAGAATCTATATCAGAGGCCACTTCAGGAGCCATAGGGTCACTGTTGAGCACCACCATTCTGTACCCACTTGACACCTGCAAAACCAGGTACCAAGCTGACGTCAGAGCCAATGATCAGGCCAAGTACAGGAACCTCTCAGATGTATTCTGGGAAGCAATATCCACTCGGCAGGTTCTTTCACTGTATCAGGGTCTGGAAACAAAAAACCTGCAATCCTTCATTTCTCAGTTTGTTTACTTTTATGGGTATAGCTACTTCAAAAGATTATATCTGGAAACCAGCGGTTCTAAATCAATAGGTACAACAGCAAACTTGATCCTTGCTGCTGCTGCTGGGGCTTGCACTGCCATTGCCACCCAGCCTCTGGATACAGCATCGTCAAGGATGCAGACAAGTGCCTTTGGAAAATCCAAAGGGCTGTGGAAGACCCTTACAGAGGGCACCTGGAGTGATGCATTTGATGGTCTTGGAATCTCCCTGTTGCTTACAGCGAACCCTGCAATTCAGTATACAGTGTTTGATCAGCTAAAACAAAGACTCCTGAAAGGAAAACAGGATAAATTGGCCAAGGGCTCATCCCCGGAAGCCCTTTCTGCCTTTTCAGCATTTGTTCTAGGTGCAGTCTCAAAAAGTGTTGCTACCGTTTTGACCTATCCTGCCATCAGGTGTAAGGTCATGATCCAAGCTGCTGACCCAGATGATGACGATAAAACCAAGGAAGCCCGCCCAAGGATCCGAAAAACGATTCCGGGAACTTTCAGTGCTATATGGAAAAGGGAAGGCATTCCAGGCTACTTCAAAGGATTGCATGCCCAGATCTTGAAAACTGTTCTGAGCTCCGCATTGCTTTTGATGATCAAGGAAAAAATTTCTGCTACTACTTGGGTTCTCATACTTGCAATCAGAAGGTATCTATTCCTCACAAGAGGCAGAGTAAAAAATGCATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

390

Amino Acids

43.26

Weight (kDa)

9.86

Isoelectric Point (pI)

26.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 77 - 167 8.8e-15 Mitochondrial carrier protein
Mito_carr PF00153 175 - 257 9e-08 Mitochondrial carrier protein
Mito_carr PF00153 272 - 366 1.2e-12 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 150
AarI CACCTGC 1 cut(s) 308
AatII GACGTC 1 cut(s) 327
Acc36I ACCTGC 3 cut(s) 308, 385, 441
Acc65I GGTACC 1 cut(s) 312
AccB1I GGYRCC 2 cut(s) 312, 665
AccB7I CCANNNNNTGG 1 cut(s) 589
AccI GTMKAC 1 cut(s) 734
AciI CCGC 3 cut(s) 507, 949, 1065
AclWI GGATC 6 cut(s) 82, 228, 535, 898, 952, 965
AcoI YGGCCR 1 cut(s) 789
AcsI RAATTY 1 cut(s) 1092
AcuI CTGAAG 1 cut(s) 231
AcyI GRCGYC 2 cut(s) 66, 324
AfaI GTAC 4 cut(s) 287, 314, 350, 526
AfiI CCNNNNNNNGG 4 cut(s) 351, 589, 661, 954
AgsI TTSAA 7 cut(s) 51, 102, 110, 170, 484, 1024, 1048
AjnI CCWGG 3 cut(s) 308, 668, 1012
AluBI AGCT 5 cut(s) 320, 477, 751, 911, 1062
AluI AGCT 5 cut(s) 320, 477, 751, 911, 1062
Alw21I GWGCWC 2 cut(s) 275, 1064
Alw26I GTCTC 1 cut(s) 853
AlwI GGATC 6 cut(s) 82, 228, 535, 898, 952, 965
AlwNI CAGNNNCTG 2 cut(s) 418, 589
AoxI GGCC 3 cut(s) 240, 342, 789
ApeKI GCWGC 4 cut(s) 548, 551, 554, 911
ApoI RAATTY 1 cut(s) 1092
Asp700I GAANNNNTTC 1 cut(s) 1008
Asp718I GGTACC 1 cut(s) 312
AspS9I GGNCC 1 cut(s) 79
AsuC2I CCSGG 2 cut(s) 806, 975
AvaII GGWCC 1 cut(s) 79
BaeGI GKGCMC 1 cut(s) 668
BalI TGGCCA 1 cut(s) 791
BamHI GGATCC 1 cut(s) 957
BanI GGYRCC 2 cut(s) 312, 665
BanII GRGCYC 2 cut(s) 800, 1064
BarI GAAGNNNNNNTAC 2 cut(s) 464, 496
BbsI GAAGAC 2 cut(s) 69, 656
Bbv12I GWGCWC 2 cut(s) 275, 1064
BbvI GCAGC 4 cut(s) 535, 538, 541, 898
BccI CCATC 3 cut(s) 211, 680, 893
BceAI ACGGC 1 cut(s) 43
BciT130I CCWGG 3 cut(s) 310, 670, 1014
BciVI GTATCC 1 cut(s) 586
BclI TGATCA 3 cut(s) 337, 745, 1080
BcnI CCSGG 2 cut(s) 806, 975
BcoDI GTCTC 1 cut(s) 853
BfaI CTAG 2 cut(s) 224, 839
BfuAI ACCTGC 3 cut(s) 308, 385, 441
BfuI GTATCC 1 cut(s) 586
BglII AGATCT 1 cut(s) 1041
BisI GCNGC 4 cut(s) 549, 552, 555, 912
BlsI GCNGC 4 cut(s) 550, 553, 556, 913
Bme1390I CCNGG 5 cut(s) 310, 670, 806, 975, 1014
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 5 cut(s) 253, 314, 356, 667, 959
BmrFI CCNGG 5 cut(s) 310, 670, 806, 975, 1014
BmsI GCATC 3 cut(s) 600, 608, 667
BpiI GAAGAC 2 cut(s) 69, 656
BpmI CTGGAG 1 cut(s) 691
BpuMI CCSGG 2 cut(s) 806, 975
BsaAI YACGTR 1 cut(s) 158
BsaHI GRCGYC 2 cut(s) 66, 324
BsaJI CCNNGG 4 cut(s) 792, 804, 939, 953
BsaWI WCCGGW 1 cut(s) 71
BsaXI ACNNNNNCTCC 2 cut(s) 747, 777
Bsc4I CCNNNNNNNGG 4 cut(s) 351, 589, 661, 954
Bse3DI GCAATG 2 cut(s) 573, 1067
BseBI CCWGG 3 cut(s) 310, 670, 1014
BseDI CCNNGG 4 cut(s) 792, 804, 939, 953
BseGI GGATG 3 cut(s) 222, 615, 800
BseLI CCNNNNNNNGG 4 cut(s) 351, 589, 661, 954
BseMI GCAATG 2 cut(s) 573, 1067
BseMII CTCAG 3 cut(s) 375, 464, 1049
BseSI GKGCMC 1 cut(s) 668
BseXI GCAGC 4 cut(s) 535, 538, 541, 898
BseYI CCCAGC 2 cut(s) 557, 582
BsgI GTGCAG 1 cut(s) 864
BshFI GGCC 3 cut(s) 242, 344, 791
BshNI GGYRCC 2 cut(s) 312, 665
BsiHKAI GWGCWC 2 cut(s) 275, 1064
BsiSI CCGG 3 cut(s) 72, 806, 974
BslFI GGGAC 1 cut(s) 99
BslI CCNNNNNNNGG 4 cut(s) 351, 589, 661, 954
BsmAI GTCTC 1 cut(s) 853
BsmFI GGGAC 1 cut(s) 99
BsmI GAATGC 1 cut(s) 1008
BsnI GGCC 3 cut(s) 242, 344, 791
Bsp1286I GDGCHC 4 cut(s) 275, 668, 800, 1064
BspACI CCGC 3 cut(s) 507, 949, 1065
BspANI GGCC 3 cut(s) 242, 344, 791
BspCNI CTCAG 3 cut(s) 374, 463, 1050
BspHI TCATGA 1 cut(s) 900
BspLI GGNNCC 5 cut(s) 253, 314, 356, 667, 959
BspMI ACCTGC 3 cut(s) 308, 385, 441
BspPI GGATC 6 cut(s) 82, 228, 535, 898, 952, 965
BspT107I GGYRCC 2 cut(s) 312, 665
BsrDI GCAATG 2 cut(s) 573, 1067
BssECI CCNNGG 4 cut(s) 792, 804, 939, 953
BssNAI GTATAC 1 cut(s) 735
BssNI GRCGYC 2 cut(s) 66, 324
BssT1I CCWWGG 3 cut(s) 792, 939, 953
Bst1107I GTATAC 1 cut(s) 735
Bst2UI CCWGG 3 cut(s) 310, 670, 1014
Bst4CI ACNGT 5 cut(s) 267, 408, 739, 868, 1054
BstACI GRCGYC 2 cut(s) 66, 324
BstBAI YACGTR 1 cut(s) 158
BstC8I GCNNGC 3 cut(s) 565, 949, 1035
BstDEI CTNAG 3 cut(s) 361, 450, 1058
BstENI CCTNNNNNAGG 1 cut(s) 659
BstF5I GGATG 3 cut(s) 222, 615, 800
BstMAI GTCTC 1 cut(s) 853
BstMWI GCNNNNNNNGC 7 cut(s) 554, 560, 569, 722, 818, 827, 1014
BstNI CCWGG 3 cut(s) 310, 670, 1014
BstNSI RCATGY 1 cut(s) 1037
BstSCI CCNGG 5 cut(s) 308, 668, 804, 973, 1012
BstSLI GKGCMC 1 cut(s) 668
BstV1I GCAGC 4 cut(s) 535, 538, 541, 898
BstV2I GAAGAC 2 cut(s) 69, 656
BstX2I RGATCY 3 cut(s) 220, 957, 1041
BstYI RGATCY 3 cut(s) 220, 957, 1041
BstZ17I GTATAC 1 cut(s) 735
BsuI GTATCC 1 cut(s) 586
BsuRI GGCC 3 cut(s) 242, 344, 791
BtsCI GGATG 3 cut(s) 222, 615, 800
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 5 cut(s) 263, 404, 567, 744, 991
BveI ACCTGC 3 cut(s) 308, 385, 441
Cac8I GCNNGC 3 cut(s) 565, 949, 1035
CaiI CAGNNNCTG 2 cut(s) 418, 589
CciI TCATGA 1 cut(s) 900
Cfr13I GGNCC 1 cut(s) 79
CseI GACGC 1 cut(s) 74
CsiI ACCWGGT 1 cut(s) 308
Csp6I GTAC 4 cut(s) 286, 313, 349, 525
CviAII CATG 3 cut(s) 901, 1034, 1170
CviQI GTAC 4 cut(s) 286, 313, 349, 525
DdeI CTNAG 3 cut(s) 361, 450, 1058
EaeI YGGCCR 1 cut(s) 789
Ecl136II GAGCTC 1 cut(s) 1062
Eco130I CCWWGG 3 cut(s) 792, 939, 953
Eco24I GRGCYC 2 cut(s) 800, 1064
Eco47I GGWCC 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 1062
Eco57I CTGAAG 1 cut(s) 231
EcoICRI GAGCTC 1 cut(s) 1062
EcoNI CCTNNNNNAGG 1 cut(s) 659
EcoRII CCWGG 3 cut(s) 308, 668, 1012
EcoT14I CCWWGG 3 cut(s) 792, 939, 953
EcoT22I ATGCAT 2 cut(s) 682, 1171
EcoT38I GRGCYC 2 cut(s) 800, 1064
ErhI CCWWGG 3 cut(s) 792, 939, 953
FaeI CATG 3 cut(s) 904, 1037, 1173
FaqI GGGAC 1 cut(s) 99
FatI CATG 3 cut(s) 900, 1033, 1169
FauI CCCGC 1 cut(s) 956
FbaI TGATCA 3 cut(s) 337, 745, 1080
FblI GTMKAC 1 cut(s) 734
Fnu4HI GCNGC 4 cut(s) 549, 552, 555, 912
FokI GGATG 3 cut(s) 229, 622, 787
FriOI GRGCYC 2 cut(s) 800, 1064
Fsp4HI GCNGC 4 cut(s) 549, 552, 555, 912
FspBI CTAG 2 cut(s) 224, 839
GluI GCNGC 4 cut(s) 549, 552, 555, 912
GsaI CCCAGC 2 cut(s) 561, 586
GsuI CTGGAG 1 cut(s) 691
HaeIII GGCC 3 cut(s) 242, 344, 791
HapII CCGG 3 cut(s) 72, 806, 974
HgaI GACGC 1 cut(s) 74
Hin1I GRCGYC 2 cut(s) 66, 324
Hin1II CATG 3 cut(s) 904, 1037, 1173
HinfI GANTC 4 cut(s) 227, 696, 762, 970
HpaII CCGG 3 cut(s) 72, 806, 974
Hpy166II GTNNAC 2 cut(s) 460, 735
Hpy188I TCNGA 7 cut(s) 79, 238, 329, 364, 962, 1059, 1130
Hpy188III TCNNGA 9 cut(s) 214, 224, 249, 419, 497, 590, 766, 901, 1045
Hpy8I GTNNAC 2 cut(s) 460, 735
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 4 cut(s) 108, 451, 998, 1125
HpyCH4III ACNGT 5 cut(s) 267, 408, 739, 868, 1054
HpyCH4IV ACGT 4 cut(s) 42, 112, 157, 324
HpyF10VI GCNNNNNNNGC 7 cut(s) 554, 560, 569, 722, 818, 827, 1014
HpyF3I CTNAG 3 cut(s) 361, 450, 1058
HpySE526I ACGT 4 cut(s) 42, 112, 157, 324
Hsp92I GRCGYC 2 cut(s) 66, 324
Hsp92II CATG 3 cut(s) 904, 1037, 1173
KpnI GGTACC 1 cut(s) 316
Ksp22I TGATCA 3 cut(s) 337, 745, 1080
LmnI GCTCC 2 cut(s) 251, 1067
Lsp1109I GCAGC 4 cut(s) 535, 538, 541, 898
LweI GCATC 3 cut(s) 600, 608, 667
MabI ACCWGGT 1 cut(s) 308
MaeI CTAG 2 cut(s) 224, 839
MaeII ACGT 4 cut(s) 42, 112, 157, 324
MaeIII GTNAC 2 cut(s) 153, 261
MboII GAAGA 8 cut(s) 74, 205, 208, 211, 214, 217, 220, 661
MflI RGATCY 3 cut(s) 220, 957, 1041
MhlI GDGCHC 4 cut(s) 275, 668, 800, 1064
MlsI TGGCCA 1 cut(s) 791
MluCI AATT 5 cut(s) 143, 183, 726, 785, 1092
MluNI TGGCCA 1 cut(s) 791
MlyI GAGTC 1 cut(s) 756
MnlI CCTC 8 cut(s) 92, 97, 232, 368, 597, 655, 1145, 1154
Mox20I TGGCCA 1 cut(s) 791
Mph1103I ATGCAT 2 cut(s) 682, 1171
MroXI GAANNNNTTC 1 cut(s) 1008
MscI TGGCCA 1 cut(s) 791
MseI TTAA 1 cut(s) 186
Msp20I TGGCCA 1 cut(s) 791
MspA1I CMGCKG 1 cut(s) 507
MspI CCGG 3 cut(s) 72, 806, 974
MspR9I CCNGG 5 cut(s) 310, 670, 806, 975, 1014
Mva1269I GAATGC 1 cut(s) 1008
MvaI CCWGG 3 cut(s) 310, 670, 1014
MwoI GCNNNNNNNGC 7 cut(s) 554, 560, 569, 722, 818, 827, 1014
NciI CCSGG 2 cut(s) 806, 975
NlaIII CATG 3 cut(s) 904, 1037, 1173
NlaIV GGNNCC 5 cut(s) 253, 314, 356, 667, 959
NmeAIII GCCGAG 1 cut(s) 370
NmuCI GTSAC 1 cut(s) 261
NsiI ATGCAT 2 cut(s) 682, 1171
NspI RCATGY 1 cut(s) 1037
PaeI GCATGC 1 cut(s) 1037
PagI TCATGA 1 cut(s) 900
PaqCI CACCTGC 1 cut(s) 308
PctI GAATGC 1 cut(s) 1008
PdmI GAANNNNTTC 1 cut(s) 1008
PfeI GAWTC 3 cut(s) 227, 696, 970
PflMI CCANNNNNTGG 1 cut(s) 589
PfoI TCCNGGA 1 cut(s) 973
PkrI GCNGC 4 cut(s) 550, 553, 556, 913
PleI GAGTC 1 cut(s) 756
PpsI GAGTC 1 cut(s) 756
Ppu21I YACGTR 1 cut(s) 158
PsiI TTATAA 1 cut(s) 150
Psp124BI GAGCTC 1 cut(s) 1064
Psp6I CCWGG 3 cut(s) 308, 668, 1012
PspFI CCCAGC 2 cut(s) 557, 582
PspGI CCWGG 3 cut(s) 308, 668, 1012
PspN4I GGNNCC 5 cut(s) 253, 314, 356, 667, 959
PspPI GGNCC 1 cut(s) 79
PstNI CAGNNNCTG 2 cut(s) 418, 589
PsuI RGATCY 3 cut(s) 220, 957, 1041
RsaI GTAC 4 cut(s) 287, 314, 350, 526
RsaNI GTAC 4 cut(s) 286, 313, 349, 525
SacI GAGCTC 1 cut(s) 1064
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 4 cut(s) 549, 552, 555, 912
Sau96I GGNCC 1 cut(s) 79
SchI GAGTC 1 cut(s) 756
ScrFI CCNGG 5 cut(s) 310, 670, 806, 975, 1014
SduI GDGCHC 4 cut(s) 275, 668, 800, 1064
SexAI ACCWGGT 1 cut(s) 308
SfaNI GCATC 3 cut(s) 600, 608, 667
SinI GGWCC 1 cut(s) 79
SphI GCATGC 1 cut(s) 1037
Sse9I AATT 5 cut(s) 143, 183, 726, 785, 1092
SsiI CCGC 3 cut(s) 507, 949, 1065
SspMI CTAG 2 cut(s) 224, 839
SstI GAGCTC 1 cut(s) 1064
StyD4I CCNGG 5 cut(s) 308, 668, 804, 973, 1012
StyI CCWWGG 3 cut(s) 792, 939, 953
TaaI ACNGT 5 cut(s) 267, 408, 739, 868, 1054
TaiI ACGT 4 cut(s) 45, 115, 160, 327
TasI AATT 5 cut(s) 143, 183, 726, 785, 1092
TatI WGTACW 1 cut(s) 348
TfiI GAWTC 3 cut(s) 227, 696, 970
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 5 cut(s) 270, 411, 574, 744, 991
TseFI GTSAC 1 cut(s) 261
TseI GCWGC 4 cut(s) 548, 551, 554, 911
Tsp45I GTSAC 1 cut(s) 261
TspDTI ATGAA 2 cut(s) 17, 433
TspRI CASTG 5 cut(s) 270, 411, 574, 744, 991
Van91I CCANNNNNTGG 1 cut(s) 589
VpaK11BI GGWCC 1 cut(s) 79
XagI CCTNNNNNAGG 1 cut(s) 659
XapI RAATTY 1 cut(s) 1092
XbaI TCTAGA 1 cut(s) 223
XceI RCATGY 1 cut(s) 1037
XcmI CCANNNNNNNNNTGG 1 cut(s) 586
XmiI GTMKAC 1 cut(s) 734
XmnI GAANNNNTTC 1 cut(s) 1008
XspI CTAG 2 cut(s) 224, 839
ZraI GACGTC 1 cut(s) 325
Zsp2I ATGCAT 2 cut(s) 682, 1171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.