Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002958

Physical Location & Seq

Genomic Coordinates Forward (+)

20325792 .. 20326558

Gene Structure 767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g18220.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGCAGACAAGTGCCTTTGGAAAATCCAAAGGCTTGTGGAAGACTCTTACAGAGGGCAGCTGGATTGATGCATTTGATGGTCTAGGAATCTCCCTGTTGCTGACCGCGAACCCTGCAATTCAGTATACAGTGTTCGATCAGCTAAAACTCAGACTCCTGAAAAGGAAGAATAAAACGGGCAAGGATTCTTCTCCAGAAGCCCTTTCTGCCTTCACAGCATTTGTTTTAGGTGCAGTCTCAAAGACTGTTGCCACTGTTCTGACCTACCCCGCCATCAGGTGTAAGGTCATGATCCAAGCTGCTGACGAAGATGATGGAGAAAACCCCCAGCCAAAGTCCAGCAAAACGATTCCAGCAGTTCTATGTGCCATATGGAAAAGGGAAGGGATTTTCGGCTTCTTCAAGGGCTTGCATGCTCAGATCTTGAAGACCGTCCTGAGCTCGGCATTGCTTCTGATGATCAAGGAAAAGATCTCCGCCGCTACTTGGGTTCTTCTACTTTCAATCAGAAGGTCTCTATTGCTCACAAGGGGCAGACTAAAAAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005777 GO:0005778 GO:0005779 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0007275 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009056 GO:0009062 GO:0009791 GO:0009850 GO:0009987 GO:0010817 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016042 GO:0016054 GO:0019395 GO:0019752 GO:0019866 GO:0022857 GO:0030258 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032787 GO:0034220 GO:0034440 GO:0034641 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046483 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0055114 GO:0065007 GO:0065008 GO:0071702 GO:0071704 GO:0071705 GO:0072329 GO:0080024 GO:0090351 GO:0098588 GO:0098656 GO:0098805 GO:1901264 GO:1901360 GO:1901505 GO:1901564 GO:1901575 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

184

Amino Acids

19.98

Weight (kDa)

10.01

Isoelectric Point (pI)

28.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05290 AT5G27520
fragaria_vesca	FvH4_4g14900 FvH4_6g05760
malus_domestica	MD04G1205900.v1.1 MD12G1220000.v1.1 MD13G1186400.v1.1 MD16G1187100.v1.1
prunus_persica	Prupe.1G154100_v2.0.a1 Prupe.1G154100_v2.0.a1 Prupe.6G326700_v2.0.a1
pyrus_communis	pycom04g18220 pycom12g20540 pycom13g16130 pycom16g15710
rosa_chinensis	RchiOBHm_Chr3g0454671 RchiOBHm_Chr4g0417191 RchiOBHm_Chr4g0417301
rosa_laevigata	RLG00000007919 RLG00000025425
rosa_multiflora	Rmu_sc0000646.1_g000002 Rmu_sc0002129.1_g000048
rosa_roxburghii	Rroxscaffold_5G00361050 Rroxscaffold_6G00424870
rosa_rugosa	Rorug03G0001100.1 Rorug04G0146200 Rorug04G0146600
rosa_samantha	Rh3AG061000 Rh3CG061700 Rh3DG062600 Rh4AG209400 Rh4AG210200 Rh4CG220600 Rh4CG221200 Rh4DG207200 Rh4DG208200
rosa_wichuraiana	Rw3G004750 Rw4G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	125
AccII	CGCG	1 cut(s)	107
AciI	CCGC	4 cut(s)	105, 270, 477, 480
AclWI	GGATC	1 cut(s)	286
AfiI	CCNNNNNNNGG	3 cut(s)	276, 442, 486
AgsI	TTSAA	3 cut(s)	403, 427, 504
AluBI	AGCT	4 cut(s)	60, 142, 299, 441
AluI	AGCT	4 cut(s)	60, 142, 299, 441
Alw21I	GWGCWC	1 cut(s)	443
Alw26I	GTCTC	2 cut(s)	241, 519
AlwI	GGATC	1 cut(s)	286
ApeKI	GCWGC	2 cut(s)	57, 299
BanII	GRGCYC	1 cut(s)	443
BbsI	GAAGAC	2 cut(s)	47, 434
Bbv12I	GWGCWC	1 cut(s)	443
BbvI	GCAGC	2 cut(s)	69, 286
BccI	CCATC	3 cut(s)	71, 281, 308
BclI	TGATCA	1 cut(s)	459
BcoDI	GTCTC	2 cut(s)	241, 519
BfaI	CTAG	1 cut(s)	83
BglII	AGATCT	2 cut(s)	420, 471
BisI	GCNGC	3 cut(s)	58, 300, 480
BlsI	GCNGC	3 cut(s)	59, 301, 481
BmsI	GCATC	1 cut(s)	58
BpiI	GAAGAC	2 cut(s)	47, 434
BpmI	CTGGAG	1 cut(s)	177
Bpu10I	CCTNAGC	1 cut(s)	437
BsaI	GGTCTC	1 cut(s)	519
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bsc4I	CCNNNNNNNGG	3 cut(s)	276, 442, 486
Bse3DI	GCAATG	1 cut(s)	446
BseLI	CCNNNNNNNGG	3 cut(s)	276, 442, 486
BseMI	GCAATG	1 cut(s)	446
BseMII	CTCAG	3 cut(s)	163, 428, 431
BseXI	GCAGC	2 cut(s)	69, 286
BseYI	CCCAGC	1 cut(s)	327
BsgI	GTGCAG	1 cut(s)	252
Bsh1236I	CGCG	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	443
BslI	CCNNNNNNNGG	3 cut(s)	276, 442, 486
BsmAI	GTCTC	2 cut(s)	241, 519
Bso31I	GGTCTC	1 cut(s)	519
Bsp1286I	GDGCHC	1 cut(s)	443
Bsp143I	GATC	5 cut(s)	136, 291, 420, 459, 471
BspACI	CCGC	4 cut(s)	105, 270, 477, 480
BspCNI	CTCAG	3 cut(s)	162, 429, 430
BspFNI	CGCG	1 cut(s)	107
BspHI	TCATGA	1 cut(s)	288
BspPI	GGATC	1 cut(s)	286
BspTNI	GGTCTC	1 cut(s)	519
BsrDI	GCAATG	1 cut(s)	446
BssMI	GATC	5 cut(s)	136, 291, 420, 459, 471
BssNAI	GTATAC	1 cut(s)	126
Bst1107I	GTATAC	1 cut(s)	126
Bst4CI	ACNGT	4 cut(s)	130, 247, 256, 433
BstC8I	GCNNGC	2 cut(s)	410, 414
BstDEI	CTNAG	3 cut(s)	149, 417, 437
BstFNI	CGCG	1 cut(s)	107
BstKTI	GATC	5 cut(s)	139, 294, 423, 462, 474
BstMAI	GTCTC	2 cut(s)	241, 519
BstMBI	GATC	5 cut(s)	136, 291, 420, 459, 471
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 206, 215
BstNSI	RCATGY	1 cut(s)	416
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	2 cut(s)	69, 286
BstV2I	GAAGAC	2 cut(s)	47, 434
BstX2I	RGATCY	2 cut(s)	420, 471
BstYI	RGATCY	2 cut(s)	420, 471
BstZ17I	GTATAC	1 cut(s)	126
BtsIMutI	CAGTG	2 cut(s)	135, 252
Cac8I	GCNNGC	2 cut(s)	410, 414
CciI	TCATGA	1 cut(s)	288
CviAII	CATG	2 cut(s)	289, 413
CviJI	RGCY	9 cut(s)	33, 60, 142, 200, 299, 331, 396, 408, 441
CviKI_1	RGCY	9 cut(s)	33, 60, 142, 200, 299, 331, 396, 408, 441
DdeI	CTNAG	3 cut(s)	149, 417, 437
DpnI	GATC	5 cut(s)	138, 293, 422, 461, 473
DpnII	GATC	5 cut(s)	136, 291, 420, 459, 471
EciI	GGCGGA	1 cut(s)	466
Ecl136II	GAGCTC	1 cut(s)	441
Eco24I	GRGCYC	1 cut(s)	443
Eco31I	GGTCTC	1 cut(s)	519
Eco53kI	GAGCTC	1 cut(s)	441
EcoICRI	GAGCTC	1 cut(s)	441
EcoT22I	ATGCAT	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	443
FaeI	CATG	2 cut(s)	292, 416
FaiI	YATR	6 cut(s)	126, 290, 364, 371, 373, 414
FatI	CATG	2 cut(s)	288, 412
FauI	CCCGC	1 cut(s)	277
FauNDI	CATATG	1 cut(s)	371
FbaI	TGATCA	1 cut(s)	459
FblI	GTMKAC	1 cut(s)	125
Fnu4HI	GCNGC	3 cut(s)	58, 300, 480
FriOI	GRGCYC	1 cut(s)	443
Fsp4HI	GCNGC	3 cut(s)	58, 300, 480
FspBI	CTAG	1 cut(s)	83
GluI	GCNGC	3 cut(s)	58, 300, 480
GsaI	CCCAGC	1 cut(s)	331
GsuI	CTGGAG	1 cut(s)	177
Hin1II	CATG	2 cut(s)	292, 416
HinfI	GANTC	5 cut(s)	43, 87, 153, 185, 349
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	5 cut(s)	152, 261, 420, 456, 509
Hpy188III	TCNNGA	5 cut(s)	157, 194, 289, 424, 436
Hpy8I	GTNNAC	1 cut(s)	126
HpyAV	CCTTC	3 cut(s)	220, 377, 504
HpyCH4III	ACNGT	4 cut(s)	130, 247, 256, 433
HpyCH4V	TGCA	5 cut(s)	4, 71, 116, 233, 412
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 206, 215
HpyF3I	CTNAG	3 cut(s)	149, 417, 437
Hsp92II	CATG	2 cut(s)	292, 416
Ksp22I	TGATCA	1 cut(s)	459
Kzo9I	GATC	5 cut(s)	136, 291, 420, 459, 471
Lsp1109I	GCAGC	2 cut(s)	69, 286
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	83
MalI	GATC	5 cut(s)	138, 293, 422, 461, 473
MboI	GATC	5 cut(s)	136, 291, 420, 459, 471
MboII	GAAGA	7 cut(s)	52, 178, 180, 320, 391, 439, 485
MflI	RGATCY	2 cut(s)	420, 471
MhlI	GDGCHC	1 cut(s)	443
MluCI	AATT	1 cut(s)	117
MlyI	GAGTC	2 cut(s)	37, 147
MnlI	CCTC	1 cut(s)	46
Mph1103I	ATGCAT	1 cut(s)	73
MspA1I	CMGCKG	1 cut(s)	60
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	3 cut(s)	113, 206, 215
NdeI	CATATG	1 cut(s)	371
NdeII	GATC	5 cut(s)	136, 291, 420, 459, 471
NlaIII	CATG	2 cut(s)	292, 416
NmeAIII	GCCGAG	1 cut(s)	422
NsiI	ATGCAT	1 cut(s)	73
NspI	RCATGY	1 cut(s)	416
PaeI	GCATGC	1 cut(s)	416
PagI	TCATGA	1 cut(s)	288
PfeI	GAWTC	3 cut(s)	87, 185, 349
PkrI	GCNGC	3 cut(s)	59, 301, 481
PleI	GAGTC	2 cut(s)	37, 147
PpsI	GAGTC	2 cut(s)	37, 147
Psp124BI	GAGCTC	1 cut(s)	443
PspFI	CCCAGC	1 cut(s)	327
PsrI	GAACNNNNNNTAC	2 cut(s)	116, 148
PsuI	RGATCY	2 cut(s)	420, 471
PvuII	CAGCTG	1 cut(s)	60
SacI	GAGCTC	1 cut(s)	443
SatI	GCNGC	3 cut(s)	58, 300, 480
Sau3AI	GATC	5 cut(s)	136, 291, 420, 459, 471
SchI	GAGTC	2 cut(s)	37, 147
SduI	GDGCHC	1 cut(s)	443
SetI	ASST	9 cut(s)	62, 144, 232, 266, 281, 288, 301, 443, 515
SfaNI	GCATC	1 cut(s)	58
SphI	GCATGC	1 cut(s)	416
Sse9I	AATT	1 cut(s)	117
SsiI	CCGC	4 cut(s)	105, 270, 477, 480
SspMI	CTAG	1 cut(s)	83
SstI	GAGCTC	1 cut(s)	443
TaaI	ACNGT	4 cut(s)	130, 247, 256, 433
TaqI	TCGA	1 cut(s)	135
TasI	AATT	1 cut(s)	117
TauI	GCSGC	1 cut(s)	482
TfiI	GAWTC	3 cut(s)	87, 185, 349
TscAI	CASTG	2 cut(s)	135, 259
TseI	GCWGC	2 cut(s)	57, 299
TspRI	CASTG	2 cut(s)	135, 259
XceI	RCATGY	1 cut(s)	416
XmiI	GTMKAC	1 cut(s)	125
XspI	CTAG	1 cut(s)	83
Zsp2I	ATGCAT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.