Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002958

Physical Location & Seq

Genomic Coordinates Reverse (-)

15870541 .. 15873256

Gene Structure 2716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1186400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGGATTTGATCTGGAATCAGTTGCAGAGGCAACGTCCGGCGCCATTGGAGCTCTGGTCAGCACCACCATCCTGTACCCTCTTGACACCTGCAAGACCAAGTACCAAGCTGAAGTCCGAGCCCACCATCAGCAGAAATACAGGAACATTTCTGATGTGTTATGGGAAGCAATTTCTACCCGTCAGGTGCTTTCTTTATACCAGGGCCTTGGGACTAAGAACTTTCAGTCCTTTATTTCACAGTTCATCTACTTCTATGGATACAGTTTTTTTAAGAGGTTATACTTGGAGAAAAGTGGAAATAAAAACATGGGAACAAGAGCAAACTTGATAGTTGCAGCCGCTGCCGGGGCTTGTACAGTCATAGTGACACAGCCCTTGGATACAGCATCCTCAGAGATGCAGACAAGTGAGTTTGGGAAATCCAAAGGACTCTGGAAGACGCTTTCAGAGGGGACTTGGATTGAGGCATTTGACGGTCTTGGCATATCTCTTCTTTTGACATCTAACCCATCTATCCAGCACACGGTATTTGATCAGCTCAAACAAAGGCTTTTGAGAGGACAGCTGAGCAAAAGAACAGCCATCAGGTGCAAGGTCATGATTCAAGCTGCAGAAGAAGAGGAAGAAGGCAGCAACGGAGCTCAAAGCGAATCTCAAAAGTCCCAAAGGACCGTTTCAGGTGCATTTTATGCCATTTGGAAACGAGAGGGGCTGTTGGGTTTCTTCAAGGGATTACAGGCTCAGATACTGAAAACTGTGCTAAGCTCGGCATTGCTTTTGATGATAAAGGAAAAGATCACAAAGACAACATGGGTCATATTGCTTGCTGTGAGGAGGTATTTGTTTGTCAACAAGAGCAGATTAAAGAGCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

293

Amino Acids

32.56

Weight (kDa)

9.63

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	6 - 98	1.3e-15	Mitochondrial carrier protein
Mito_carr	PF00153	106 - 187	6.4e-06	Mitochondrial carrier protein
Mito_carr	PF00153	215 - 269	7.3e-08	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05290 AT5G27520
fragaria_vesca	FvH4_4g14900 FvH4_6g05760
malus_domestica	MD04G1205900.v1.1 MD12G1220000.v1.1 MD13G1186400.v1.1 MD16G1187100.v1.1
prunus_persica	Prupe.1G154100_v2.0.a1 Prupe.1G154100_v2.0.a1 Prupe.6G326700_v2.0.a1
pyrus_communis	pycom04g18220 pycom12g20540 pycom13g16130 pycom16g15710
rosa_chinensis	RchiOBHm_Chr3g0454671 RchiOBHm_Chr4g0417191 RchiOBHm_Chr4g0417301
rosa_laevigata	RLG00000007919 RLG00000025425
rosa_multiflora	Rmu_sc0000646.1_g000002 Rmu_sc0002129.1_g000048
rosa_roxburghii	Rroxscaffold_5G00361050 Rroxscaffold_6G00424870
rosa_rugosa	Rorug03G0001100.1 Rorug04G0146200 Rorug04G0146600
rosa_samantha	Rh3AG061000 Rh3CG061700 Rh3DG062600 Rh4AG209400 Rh4AG210200 Rh4CG220600 Rh4CG221200 Rh4DG207200 Rh4DG208200
rosa_wichuraiana	Rw3G004750 Rw4G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	98
Acc36I	ACCTGC	1 cut(s)	98
AccB1I	GGYRCC	1 cut(s)	41
AciI	CCGC	1 cut(s)	342
AcuI	CTGAAG	1 cut(s)	132
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	3 cut(s)	77, 104, 358
AfeI	AGCGCT	1 cut(s)	874
AfiI	CCNNNNNNNGG	2 cut(s)	348, 526
AgsI	TTSAA	2 cut(s)	608, 730
AjnI	CCWGG	1 cut(s)	201
AloI	GAACNNNNNNTCC	2 cut(s)	212, 244
AluBI	AGCT	7 cut(s)	53, 110, 541, 568, 611, 644, 768
AluI	AGCT	7 cut(s)	53, 110, 541, 568, 611, 644, 768
Alw21I	GWGCWC	2 cut(s)	55, 646
AlwNI	CAGNNNCTG	2 cut(s)	344, 751
Aor51HI	AGCGCT	1 cut(s)	874
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	4 cut(s)	338, 344, 611, 633
AspLEI	GCGC	2 cut(s)	44, 875
AspS9I	GGNCC	2 cut(s)	205, 672
AsuC2I	CCSGG	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	672
BanI	GGYRCC	1 cut(s)	41
BanII	GRGCYC	3 cut(s)	55, 124, 646
BbsI	GAAGAC	1 cut(s)	446
Bbv12I	GWGCWC	2 cut(s)	55, 646
BbvI	GCAGC	4 cut(s)	331, 350, 598, 645
BccI	CCATC	4 cut(s)	77, 135, 520, 593
BciT130I	CCWGG	1 cut(s)	203
BciVI	GTATCC	2 cut(s)	254, 376
BclI	TGATCA	1 cut(s)	535
BcnI	CCSGG	1 cut(s)	349
BfmI	CTRYAG	1 cut(s)	612
BfoI	RGCGCY	2 cut(s)	45, 876
BfuAI	ACCTGC	1 cut(s)	98
BfuI	GTATCC	2 cut(s)	254, 376
BisI	GCNGC	5 cut(s)	339, 342, 345, 612, 634
BlpI	GCTNAGC	2 cut(s)	569, 764
BlsI	GCNGC	5 cut(s)	340, 343, 346, 613, 635
Bme1390I	CCNGG	2 cut(s)	203, 349
Bme18I	GGWCC	1 cut(s)	672
BmgT120I	GGNCC	2 cut(s)	205, 672
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	2 cut(s)	203, 349
BmsI	GCATC	2 cut(s)	390, 398
BpiI	GAAGAC	1 cut(s)	446
Bpu1102I	GCTNAGC	2 cut(s)	569, 764
BpuMI	CCSGG	1 cut(s)	349
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	4 cut(s)	202, 208, 348, 378
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	2 cut(s)	348, 526
Bse3DI	GCAATG	1 cut(s)	773
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	4 cut(s)	202, 208, 348, 378
BseGI	GGATG	2 cut(s)	69, 389
BseLI	CCNNNNNNNGG	2 cut(s)	348, 526
BseMI	GCAATG	1 cut(s)	773
BseMII	CTCAG	3 cut(s)	408, 560, 758
BseRI	GAGGAG	1 cut(s)	850
BseXI	GCAGC	4 cut(s)	331, 350, 598, 645
BshFI	GGCC	1 cut(s)	207
BshNI	GGYRCC	1 cut(s)	41
BsiHKAI	GWGCWC	2 cut(s)	55, 646
BsiSI	CCGG	2 cut(s)	39, 348
BslFI	GGGAC	3 cut(s)	226, 469, 649
BslI	CCNNNNNNNGG	2 cut(s)	348, 526
BsmFI	GGGAC	3 cut(s)	226, 469, 649
BsnI	GGCC	1 cut(s)	207
Bsp1286I	GDGCHC	3 cut(s)	55, 124, 646
Bsp1407I	TGTACA	1 cut(s)	356
Bsp143I	GATC	3 cut(s)	10, 535, 798
Bsp1720I	GCTNAGC	2 cut(s)	569, 764
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	3 cut(s)	407, 561, 757
BspHI	TCATGA	1 cut(s)	600
BspLI	GGNNCC	1 cut(s)	43
BspMAI	CTGCAG	1 cut(s)	616
BspMI	ACCTGC	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	773
BsrGI	TGTACA	1 cut(s)	356
BssECI	CCNNGG	4 cut(s)	202, 208, 348, 378
BssMI	GATC	3 cut(s)	10, 535, 798
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	2 cut(s)	208, 378
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	7 cut(s)	243, 266, 361, 479, 529, 676, 760
Bst6I	CTCTTC	2 cut(s)	498, 615
BstACI	GRCGYC	1 cut(s)	42
BstAPI	GCANNNNNTGC	2 cut(s)	344, 692
BstAUI	TGTACA	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	828
BstDEI	CTNAG	5 cut(s)	216, 394, 569, 744, 764
BstF5I	GGATG	2 cut(s)	69, 389
BstH2I	RGCGCY	2 cut(s)	45, 876
BstHHI	GCGC	2 cut(s)	44, 875
BstKTI	GATC	3 cut(s)	13, 538, 801
BstMBI	GATC	3 cut(s)	10, 535, 798
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 344, 350, 692
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	2 cut(s)	201, 347
BstSFI	CTRYAG	1 cut(s)	612
BstV1I	GCAGC	4 cut(s)	331, 350, 598, 645
BstV2I	GAAGAC	1 cut(s)	446
BstXI	CCANNNNNNTGG	1 cut(s)	209
BsuI	GTATCC	2 cut(s)	254, 376
BsuRI	GGCC	1 cut(s)	207
BtsCI	GGATG	2 cut(s)	69, 389
BveI	ACCTGC	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	828
CaiI	CAGNNNCTG	2 cut(s)	344, 751
CciI	TCATGA	1 cut(s)	600
CfoI	GCGC	2 cut(s)	44, 875
Cfr13I	GGNCC	2 cut(s)	205, 672
CseI	GACGC	1 cut(s)	451
Csp6I	GTAC	3 cut(s)	76, 103, 357
CviAII	CATG	3 cut(s)	310, 601, 813
CviQI	GTAC	3 cut(s)	76, 103, 357
DdeI	CTNAG	5 cut(s)	216, 394, 569, 744, 764
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	3 cut(s)	12, 537, 800
DpnII	GATC	3 cut(s)	10, 535, 798
Eam1104I	CTCTTC	2 cut(s)	498, 615
EarI	CTCTTC	2 cut(s)	498, 615
Ecl136II	GAGCTC	2 cut(s)	53, 644
Eco130I	CCWWGG	2 cut(s)	208, 378
Eco24I	GRGCYC	3 cut(s)	55, 124, 646
Eco47I	GGWCC	1 cut(s)	672
Eco47III	AGCGCT	1 cut(s)	874
Eco53kI	GAGCTC	2 cut(s)	53, 644
Eco57I	CTGAAG	1 cut(s)	132
EcoICRI	GAGCTC	2 cut(s)	53, 644
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	201
EcoT14I	CCWWGG	2 cut(s)	208, 378
EcoT38I	GRGCYC	3 cut(s)	55, 124, 646
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
ErhI	CCWWGG	2 cut(s)	208, 378
FaeI	CATG	3 cut(s)	313, 604, 816
FaqI	GGGAC	3 cut(s)	226, 469, 649
FatI	CATG	3 cut(s)	309, 600, 812
FbaI	TGATCA	1 cut(s)	535
Fnu4HI	GCNGC	5 cut(s)	339, 342, 345, 612, 634
FokI	GGATG	2 cut(s)	56, 376
FriOI	GRGCYC	3 cut(s)	55, 124, 646
Fsp4HI	GCNGC	5 cut(s)	339, 342, 345, 612, 634
GlaI	GCGC	2 cut(s)	43, 874
GluI	GCNGC	5 cut(s)	339, 342, 345, 612, 634
HaeII	RGCGCY	2 cut(s)	45, 876
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	2 cut(s)	39, 348
HgaI	GACGC	1 cut(s)	451
HhaI	GCGC	2 cut(s)	44, 875
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	313, 604, 816
Hin6I	GCGC	2 cut(s)	42, 873
HinP1I	GCGC	2 cut(s)	42, 873
HincII	GTYRAC	1 cut(s)	853
HindII	GTYRAC	1 cut(s)	853
HinfI	GANTC	4 cut(s)	17, 432, 604, 653
HpaII	CCGG	2 cut(s)	39, 348
Hpy166II	GTNNAC	1 cut(s)	853
Hpy188I	TCNGA	5 cut(s)	119, 154, 397, 451, 747
Hpy188III	TCNNGA	4 cut(s)	14, 83, 436, 601
Hpy8I	GTNNAC	1 cut(s)	853
HpyAV	CCTTC	1 cut(s)	623
HpyCH4III	ACNGT	7 cut(s)	243, 266, 361, 479, 529, 676, 760
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	7 cut(s)	26, 93, 338, 403, 594, 614, 686
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 344, 350, 692
HpyF3I	CTNAG	5 cut(s)	216, 394, 569, 744, 764
HpySE526I	ACGT	1 cut(s)	35
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	313, 604, 816
HspAI	GCGC	2 cut(s)	42, 873
KasI	GGCGCC	1 cut(s)	41
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	3 cut(s)	10, 535, 798
LmnI	GCTCC	2 cut(s)	50, 641
Lsp1109I	GCAGC	4 cut(s)	331, 350, 598, 645
LweI	GCATC	2 cut(s)	390, 398
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	3 cut(s)	12, 537, 800
MboI	GATC	3 cut(s)	10, 535, 798
MboII	GAAGA	6 cut(s)	451, 485, 629, 632, 638, 718
MhlI	GDGCHC	3 cut(s)	55, 124, 646
MluCI	AATT	1 cut(s)	171
Mly113I	GGCGCC	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	426
MseI	TTAA	2 cut(s)	273, 866
MspA1I	CMGCKG	2 cut(s)	344, 568
MspI	CCGG	2 cut(s)	39, 348
MspR9I	CCNGG	2 cut(s)	203, 349
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	4 cut(s)	50, 344, 350, 692
NarI	GGCGCC	1 cut(s)	42
NciI	CCSGG	1 cut(s)	349
NdeII	GATC	3 cut(s)	10, 535, 798
NlaIII	CATG	3 cut(s)	313, 604, 816
NlaIV	GGNNCC	1 cut(s)	43
NmeAIII	GCCGAG	1 cut(s)	749
NmuCI	GTSAC	1 cut(s)	367
PagI	TCATGA	1 cut(s)	600
PaqCI	CACCTGC	1 cut(s)	98
PfeI	GAWTC	3 cut(s)	17, 604, 653
PkrI	GCNGC	5 cut(s)	340, 343, 346, 613, 635
PleI	GAGTC	1 cut(s)	426
PluTI	GGCGCC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	426
Psp124BI	GAGCTC	2 cut(s)	55, 646
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	2 cut(s)	205, 672
PstI	CTGCAG	1 cut(s)	616
PstNI	CAGNNNCTG	2 cut(s)	344, 751
PvuII	CAGCTG	1 cut(s)	568
RsaI	GTAC	3 cut(s)	77, 104, 358
RsaNI	GTAC	3 cut(s)	76, 103, 357
SacI	GAGCTC	2 cut(s)	55, 646
SaqAI	TTAA	2 cut(s)	273, 866
SatI	GCNGC	5 cut(s)	339, 342, 345, 612, 634
Sau3AI	GATC	3 cut(s)	10, 535, 798
Sau96I	GGNCC	2 cut(s)	205, 672
SchI	GAGTC	1 cut(s)	426
ScrFI	CCNGG	2 cut(s)	203, 349
SduI	GDGCHC	3 cut(s)	55, 124, 646
SfaNI	GCATC	2 cut(s)	390, 398
SfcI	CTRYAG	1 cut(s)	612
SfoI	GGCGCC	1 cut(s)	43
SinI	GGWCC	1 cut(s)	672
Sse9I	AATT	1 cut(s)	171
SsiI	CCGC	1 cut(s)	342
SspDI	GGCGCC	1 cut(s)	41
SstI	GAGCTC	2 cut(s)	55, 646
StyD4I	CCNGG	2 cut(s)	201, 347
StyI	CCWWGG	2 cut(s)	208, 378
TaaI	ACNGT	7 cut(s)	243, 266, 361, 479, 529, 676, 760
TaiI	ACGT	1 cut(s)	38
TasI	AATT	1 cut(s)	171
TatI	WGTACW	1 cut(s)	356
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	3 cut(s)	17, 604, 653
Tru1I	TTAA	2 cut(s)	273, 866
Tru9I	TTAA	2 cut(s)	273, 866
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	4 cut(s)	338, 344, 611, 633
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	1 cut(s)	235
TspGWI	ACGGA	1 cut(s)	654
VpaK11BI	GGWCC	1 cut(s)	672
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.