AT3G05290

Peroxisomal adenine nucleotide carrier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002958
Physical Location & Seq
Reverse (-)
1505831 .. 1507835
2005 bp
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UTR
Exon/CDS
Intron
AT3G05290.1

Sequence Viewer

Length: 969 bp
ATGGGTGTCGATTTGGAATCGGTGTCGGAAGCAACCTCGGGAGCTATTGGGTCGCTTCTGAGTACAACGATCTTGTATCCTCTTGATACATGTAAATCAAAGTTCCAAGCCGAGGTTCGAGCTCGTGGTCAGCAAAAATACAGATATCTTTCCGATGTTATGTGGGAGGCAATTTCTAAAGGACAAGTCTTTTCACTGTATCAAGGCCTTGGAACTAAGAATTTTCAGTCTTTCATTTCTCAGTTCATCTACTTTTATAGCTATAGCTATTTCAAGAGAGTTCATAGTGAAAGGACTGGTTCTAAATCAATTGGAACTAAGGCTAATTTGCTCATTGCTGCTGCTGCTGGGGCTTGTACTTCTGTCTTAATTCAGCCTCTAGATACAGCTTCATCAAGGATGCAAACTAGTGAGTTTGGAGAATCAAAAGGGTTGTGGAAGACCTTAACAGAGGGTTCATGGGCAGACGCATTTGATGGCCTAGGGATCTCTCTTTTATTGACTTCAAATCCTGCAATTCAGTATACAGTGTTTGATCAGCTGAAACAGCACCTTCTTAAGCAGAAAAATGCAAAAGCCGAGAATGGTTCTTCTCCGGTAGTGCTCTCTGCCTTTATGGCGTTTGTCTTAGGTGCGGTCTCCAAAAGTGTTGCCACCGTGCTCACATATCCAGCAATCAGGTGCAAGGTGATGATTCAAGCTGCGGATGAGTCGAAGGAAAACGAAACAAAGAAGCCGAGAAGAAGAACAAGGAAAACAATTCCAGGGGTTGTGTATGCCATATGGAGAAAAGAAGGAATGTTAGGGTTCTTTAAGGGCTTGCAGGCTCAAATCTTGAAGACTGTCTTGAGCTCAGCATTGCTATTGATGATCAAGGAGAAAATCACAGCAACGACATGGATTCTCATTCTAGCTATCCGTAGAACCCTGTTTCTCACAAACACAAAGGGTAAGTTAAGAAGTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005777 GO:0005778 GO:0005779 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0007275 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009056 GO:0009062 GO:0009791 GO:0009850 GO:0009987 GO:0010817 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016042 GO:0016054 GO:0019395 GO:0019752 GO:0019866 GO:0022857 GO:0030258 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032787 GO:0034220 GO:0034440 GO:0034641 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046483 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0055114 GO:0065007 GO:0065008 GO:0071702 GO:0071704 GO:0071705 GO:0072329 GO:0080024 GO:0090351 GO:0098588 GO:0098656 GO:0098805 GO:1901264 GO:1901360 GO:1901505 GO:1901564 GO:1901575 GO:1901679
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

322

Amino Acids

35.55

Weight (kDa)

9.87

Isoelectric Point (pI)

30.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 6 - 95 1.9e-13 Mitochondrial carrier protein
Mito_carr PF00153 108 - 188 2.1e-07 Mitochondrial carrier protein
Mito_carr PF00153 204 - 296 5e-14 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 524
AciI CCGC 2 cut(s) 635, 704
AclWI GGATC 1 cut(s) 494
AcsI RAATTY 1 cut(s) 220
AfaI GTAC 2 cut(s) 64, 358
AfiI CCNNNNNNNGG 1 cut(s) 112
AflII CTTAAG 1 cut(s) 557
AflIII ACRYGT 1 cut(s) 89
AgsI TTSAA 4 cut(s) 274, 507, 698, 838
AhlI ACTAGT 1 cut(s) 407
AjnI CCWGG 1 cut(s) 763
AjuI GAANNNNNNNTTGG 2 cut(s) 99, 131
AluBI AGCT 9 cut(s) 44, 122, 261, 267, 389, 541, 701, 852, 914
AluI AGCT 9 cut(s) 44, 122, 261, 267, 389, 541, 701, 852, 914
Alw21I GWGCWC 4 cut(s) 124, 606, 663, 854
Alw26I GTCTC 1 cut(s) 643
AlwI GGATC 1 cut(s) 494
Ama87I CYCGRG 1 cut(s) 37
AoxI GGCC 2 cut(s) 205, 478
ApeKI GCWGC 4 cut(s) 338, 341, 344, 701
ApoI RAATTY 1 cut(s) 220
AspA2I CCTAGG 1 cut(s) 481
AsuHPI GGTGA 1 cut(s) 700
AvaI CYCGRG 1 cut(s) 37
AvrII CCTAGG 1 cut(s) 481
BanII GRGCYC 2 cut(s) 124, 854
BauI CACGAG 1 cut(s) 123
BbsI GAAGAC 2 cut(s) 446, 845
Bbv12I GWGCWC 4 cut(s) 124, 606, 663, 854
BbvI GCAGC 4 cut(s) 325, 328, 331, 688
BccI CCATC 1 cut(s) 470
BciT130I CCWGG 1 cut(s) 765
BciVI GTATCC 1 cut(s) 87
BclI TGATCA 2 cut(s) 535, 870
BcoDI GTCTC 1 cut(s) 643
BcuI ACTAGT 1 cut(s) 407
BfaI CTAG 4 cut(s) 380, 408, 482, 911
BfmI CTRYAG 1 cut(s) 262
BfrI CTTAAG 1 cut(s) 557
BfuI GTATCC 1 cut(s) 87
BglI GCCNNNNNGGC 1 cut(s) 617
BisI GCNGC 4 cut(s) 339, 342, 345, 702
BlnI CCTAGG 1 cut(s) 481
BlpI GCTNAGC 1 cut(s) 853
BlsI GCNGC 4 cut(s) 340, 343, 346, 703
Bme1390I CCNGG 1 cut(s) 765
BmeT110I CYCGRG 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 765
BmsI GCATC 1 cut(s) 390
BpiI GAAGAC 2 cut(s) 446, 845
Bpu1102I GCTNAGC 1 cut(s) 853
BpuEI CTTGAG 1 cut(s) 868
BsaI GGTCTC 1 cut(s) 643
BsaJI CCNNGG 5 cut(s) 36, 111, 208, 481, 764
BsaWI WCCGGW 1 cut(s) 595
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse1I ACTGG 1 cut(s) 301
Bse3DI GCAATG 2 cut(s) 333, 857
BseBI CCWGG 1 cut(s) 765
BseDI CCNNGG 5 cut(s) 36, 111, 208, 481, 764
BseGI GGATG 2 cut(s) 405, 712
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMI GCAATG 2 cut(s) 333, 857
BseMII CTCAG 3 cut(s) 50, 254, 867
BseNI ACTGG 1 cut(s) 301
BseXI GCAGC 4 cut(s) 325, 328, 331, 688
BseYI CCCAGC 1 cut(s) 347
BshFI GGCC 2 cut(s) 207, 480
BsiHKAI GWGCWC 4 cut(s) 124, 606, 663, 854
BsiHKCI CYCGRG 1 cut(s) 37
BsiSI CCGG 1 cut(s) 596
BslI CCNNNNNNNGG 1 cut(s) 112
BsmAI GTCTC 1 cut(s) 643
BsnI GGCC 2 cut(s) 207, 480
Bso31I GGTCTC 1 cut(s) 643
BsoBI CYCGRG 1 cut(s) 37
Bsp1286I GDGCHC 4 cut(s) 124, 606, 663, 854
Bsp143I GATC 4 cut(s) 69, 486, 535, 870
Bsp1720I GCTNAGC 1 cut(s) 853
BspACI CCGC 2 cut(s) 635, 704
BspANI GGCC 2 cut(s) 207, 480
BspCNI CTCAG 3 cut(s) 51, 253, 866
BspPI GGATC 1 cut(s) 494
BspTI CTTAAG 1 cut(s) 557
BspTNI GGTCTC 1 cut(s) 643
BsrDI GCAATG 2 cut(s) 333, 857
BsrI ACTGG 1 cut(s) 301
BssECI CCNNGG 5 cut(s) 36, 111, 208, 481, 764
BssMI GATC 4 cut(s) 69, 486, 535, 870
BssNAI GTATAC 1 cut(s) 525
BssSI CACGAG 1 cut(s) 123
BssT1I CCWWGG 2 cut(s) 208, 481
Bst1107I GTATAC 1 cut(s) 525
Bst2BI CACGAG 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 765
Bst4CI ACNGT 4 cut(s) 198, 529, 658, 844
BstAFI CTTAAG 1 cut(s) 557
BstC8I GCNNGC 2 cut(s) 821, 825
BstDEI CTNAG 7 cut(s) 59, 216, 240, 318, 628, 853, 966
BstF5I GGATG 2 cut(s) 405, 712
BstKTI GATC 4 cut(s) 72, 489, 538, 873
BstMAI GTCTC 1 cut(s) 643
BstMBI GATC 4 cut(s) 69, 486, 535, 870
BstMWI GCNNNNNNNGC 4 cut(s) 344, 350, 547, 617
BstNI CCWGG 1 cut(s) 765
BstNSI RCATGY 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 763
BstSFI CTRYAG 1 cut(s) 262
BstV1I GCAGC 4 cut(s) 325, 328, 331, 688
BstV2I GAAGAC 2 cut(s) 446, 845
BstX2I RGATCY 1 cut(s) 486
BstYI RGATCY 1 cut(s) 486
BstZ17I GTATAC 1 cut(s) 525
BsuI GTATCC 1 cut(s) 87
BsuRI GGCC 2 cut(s) 207, 480
BtsCI GGATG 2 cut(s) 405, 712
BtsIMutI CAGTG 2 cut(s) 194, 534
Cac8I GCNNGC 2 cut(s) 821, 825
CseI GACGC 1 cut(s) 476
Csp6I GTAC 2 cut(s) 63, 357
CviAII CATG 3 cut(s) 90, 459, 897
CviQI GTAC 2 cut(s) 63, 357
DdeI CTNAG 7 cut(s) 59, 216, 240, 318, 628, 853, 966
DpnI GATC 4 cut(s) 71, 488, 537, 872
DpnII GATC 4 cut(s) 69, 486, 535, 870
Ecl136II GAGCTC 2 cut(s) 122, 852
Eco130I CCWWGG 2 cut(s) 208, 481
Eco147I AGGCCT 1 cut(s) 207
Eco24I GRGCYC 2 cut(s) 124, 854
Eco31I GGTCTC 1 cut(s) 643
Eco32I GATATC 1 cut(s) 146
Eco53kI GAGCTC 2 cut(s) 122, 852
Eco88I CYCGRG 1 cut(s) 37
EcoICRI GAGCTC 2 cut(s) 122, 852
EcoRII CCWGG 1 cut(s) 763
EcoRV GATATC 1 cut(s) 146
EcoT14I CCWWGG 2 cut(s) 208, 481
EcoT38I GRGCYC 2 cut(s) 124, 854
ErhI CCWWGG 2 cut(s) 208, 481
FaeI CATG 3 cut(s) 93, 462, 900
FalI AAGNNNNNCTT 3 cut(s) 830, 862, 949
FatI CATG 3 cut(s) 89, 458, 896
FauNDI CATATG 1 cut(s) 782
FbaI TGATCA 2 cut(s) 535, 870
FblI GTMKAC 1 cut(s) 524
Fnu4HI GCNGC 4 cut(s) 339, 342, 345, 702
FokI GGATG 2 cut(s) 412, 719
FriOI GRGCYC 2 cut(s) 124, 854
Fsp4HI GCNGC 4 cut(s) 339, 342, 345, 702
FspBI CTAG 4 cut(s) 380, 408, 482, 911
GluI GCNGC 4 cut(s) 339, 342, 345, 702
GsaI CCCAGC 1 cut(s) 351
HaeIII GGCC 2 cut(s) 207, 480
HapII CCGG 1 cut(s) 596
HgaI GACGC 1 cut(s) 476
Hin1II CATG 3 cut(s) 93, 462, 900
HinfI GANTC 5 cut(s) 17, 422, 694, 710, 901
HpaII CCGG 1 cut(s) 596
HphI GGTGA 1 cut(s) 700
Hpy166II GTNNAC 1 cut(s) 525
Hpy188I TCNGA 3 cut(s) 28, 60, 154
Hpy188III TCNNGA 6 cut(s) 39, 83, 274, 380, 835, 847
Hpy8I GTNNAC 1 cut(s) 525
HpyAV CCTTC 3 cut(s) 563, 709, 788
HpyCH4III ACNGT 4 cut(s) 198, 529, 658, 844
HpyCH4V TGCA 5 cut(s) 403, 515, 572, 684, 823
HpyF10VI GCNNNNNNNGC 4 cut(s) 344, 350, 547, 617
HpyF3I CTNAG 7 cut(s) 59, 216, 240, 318, 628, 853, 966
Hsp92II CATG 3 cut(s) 93, 462, 900
Ksp22I TGATCA 2 cut(s) 535, 870
Kzo9I GATC 4 cut(s) 69, 486, 535, 870
LmnI GCTCC 1 cut(s) 41
Lsp1109I GCAGC 4 cut(s) 325, 328, 331, 688
LweI GCATC 1 cut(s) 390
MaeI CTAG 4 cut(s) 380, 408, 482, 911
MalI GATC 4 cut(s) 71, 488, 537, 872
MboI GATC 4 cut(s) 69, 486, 535, 870
MboII GAAGA 5 cut(s) 451, 582, 753, 756, 850
MfeI CAATTG 1 cut(s) 309
MflI RGATCY 1 cut(s) 486
MhlI GDGCHC 4 cut(s) 124, 606, 663, 854
MluCI AATT 7 cut(s) 171, 220, 309, 325, 369, 516, 759
MlyI GAGTC 1 cut(s) 719
MmeI TCCRAC 1 cut(s) 6
MnlI CCTC 6 cut(s) 46, 90, 106, 160, 387, 445
MseI TTAA 5 cut(s) 368, 446, 558, 813, 956
MspA1I CMGCKG 1 cut(s) 541
MspCI CTTAAG 1 cut(s) 557
MspI CCGG 1 cut(s) 596
MspR9I CCNGG 1 cut(s) 765
MunI CAATTG 1 cut(s) 309
MvaI CCWGG 1 cut(s) 765
MwoI GCNNNNNNNGC 4 cut(s) 344, 350, 547, 617
NdeI CATATG 1 cut(s) 782
NdeII GATC 4 cut(s) 69, 486, 535, 870
NlaIII CATG 3 cut(s) 93, 462, 900
NmeAIII GCCGAG 3 cut(s) 136, 604, 762
NspI RCATGY 1 cut(s) 93
PceI AGGCCT 1 cut(s) 207
PciI ACATGT 1 cut(s) 89
PfeI GAWTC 4 cut(s) 17, 422, 694, 901
PkrI GCNGC 4 cut(s) 340, 343, 346, 703
PleI GAGTC 1 cut(s) 718
PpsI GAGTC 1 cut(s) 718
PscI ACATGT 1 cut(s) 89
Psp124BI GAGCTC 2 cut(s) 124, 854
Psp6I CCWGG 1 cut(s) 763
PspFI CCCAGC 1 cut(s) 347
PspGI CCWGG 1 cut(s) 763
PsuI RGATCY 1 cut(s) 486
PvuII CAGCTG 1 cut(s) 541
RsaI GTAC 2 cut(s) 64, 358
RsaNI GTAC 2 cut(s) 63, 357
SacI GAGCTC 2 cut(s) 124, 854
SaqAI TTAA 5 cut(s) 368, 446, 558, 813, 956
SatI GCNGC 4 cut(s) 339, 342, 345, 702
Sau3AI GATC 4 cut(s) 69, 486, 535, 870
SchI GAGTC 1 cut(s) 719
ScrFI CCNGG 1 cut(s) 765
SduI GDGCHC 4 cut(s) 124, 606, 663, 854
SfaNI GCATC 1 cut(s) 390
SfcI CTRYAG 1 cut(s) 262
SmlI CTYRAG 2 cut(s) 557, 847
SmoI CTYRAG 2 cut(s) 557, 847
SpeI ACTAGT 1 cut(s) 407
Sse9I AATT 7 cut(s) 171, 220, 309, 325, 369, 516, 759
SseBI AGGCCT 1 cut(s) 207
SsiI CCGC 2 cut(s) 635, 704
SspMI CTAG 4 cut(s) 380, 408, 482, 911
SstI GAGCTC 2 cut(s) 124, 854
StuI AGGCCT 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 763
StyI CCWWGG 2 cut(s) 208, 481
TaaI ACNGT 4 cut(s) 198, 529, 658, 844
TaqI TCGA 3 cut(s) 9, 118, 713
TasI AATT 7 cut(s) 171, 220, 309, 325, 369, 516, 759
TatI WGTACW 2 cut(s) 62, 356
TfiI GAWTC 4 cut(s) 17, 422, 694, 901
Tru1I TTAA 5 cut(s) 368, 446, 558, 813, 956
Tru9I TTAA 5 cut(s) 368, 446, 558, 813, 956
TscAI CASTG 2 cut(s) 201, 534
TseI GCWGC 4 cut(s) 338, 341, 344, 701
TspDTI ATGAA 5 cut(s) 223, 235, 272, 381, 447
TspGWI ACGGA 1 cut(s) 908
TspRI CASTG 2 cut(s) 201, 534
Vha464I CTTAAG 1 cut(s) 557
XapI RAATTY 1 cut(s) 220
XbaI TCTAGA 1 cut(s) 379
XceI RCATGY 1 cut(s) 93
XmaJI CCTAGG 1 cut(s) 481
XmiI GTMKAC 1 cut(s) 524
XspI CTAG 4 cut(s) 380, 408, 482, 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.