RchiOBHm_Chr4g0417191

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002958
Physical Location & Seq
Forward (+)
42466862 .. 42469843
2982 bp
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UTR
Exon/CDS
Intron
PRQ38728

Sequence Viewer

Length: 354 bp
ATGGGTACAAAAGCAAACTTGATAGTTGCAGCAGCTGCTGGAGCTTGCACAGTCATAGTGACAATGCCATTGGATACGGCATCATCAAGGATGCTAAAAAGTGAGTTTGGGAAATCCAAAGGACTTTGGAAGACCCTGTCAAAGGGAACTTGGATTGAAGCGTTTGATGGTCTTGGCATATCACTTCTTTTGACTTCTAACCCATCAATCCAGTATAGGGTATTTGATCAGCTGAAGCAAAGGCTATTGATTCGGCAGCTGAGCAAAAGAACAGGTACAGAGTCATCTCCAGAAGCTCTTTCTGCTTTCGCTTTGGGTGCGGTCTCAAAGTGTATCGCGTCTTGCTTGACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

117

Amino Acids

12.44

Weight (kDa)

9.72

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 338
AciI CCGC 1 cut(s) 320
AcuI CTGAAG 1 cut(s) 254
AfaI GTAC 2 cut(s) 7, 277
AfiI CCNNNNNNNGG 2 cut(s) 142, 217
AgsI TTSAA 1 cut(s) 158
AluBI AGCT 5 cut(s) 35, 44, 232, 259, 296
AluI AGCT 5 cut(s) 35, 44, 232, 259, 296
Alw26I GTCTC 1 cut(s) 328
AlwNI CAGNNNCTG 2 cut(s) 35, 38
ApeKI GCWGC 4 cut(s) 29, 32, 35, 256
BbsI GAAGAC 1 cut(s) 137
BbvI GCAGC 4 cut(s) 22, 41, 44, 268
BccI CCATC 2 cut(s) 161, 211
BceAI ACGGC 1 cut(s) 93
BciVI GTATCC 1 cut(s) 67
BclI TGATCA 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 328
BfuI GTATCC 1 cut(s) 67
BisI GCNGC 4 cut(s) 30, 33, 36, 257
BlpI GCTNAGC 1 cut(s) 260
BlsI GCNGC 4 cut(s) 31, 34, 37, 258
BmsI GCATC 2 cut(s) 81, 89
BpiI GAAGAC 1 cut(s) 137
BpmI CTGGAG 2 cut(s) 60, 273
Bpu1102I GCTNAGC 1 cut(s) 260
BsaI GGTCTC 1 cut(s) 328
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 217
Bse1I ACTGG 1 cut(s) 211
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 2 cut(s) 142, 217
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 1 cut(s) 211
BseXI GCAGC 4 cut(s) 22, 41, 44, 268
Bsh1236I CGCG 1 cut(s) 338
BslI CCNNNNNNNGG 2 cut(s) 142, 217
BsmAI GTCTC 1 cut(s) 328
Bso31I GGTCTC 1 cut(s) 328
Bsp143I GATC 1 cut(s) 226
Bsp1720I GCTNAGC 1 cut(s) 260
BspACI CCGC 1 cut(s) 320
BspCNI CTCAG 1 cut(s) 252
BspFNI CGCG 1 cut(s) 338
BspTNI GGTCTC 1 cut(s) 328
BsrI ACTGG 1 cut(s) 211
BssMI GATC 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 52
BstAPI GCANNNNNTGC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 1 cut(s) 260
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 1 cut(s) 96
BstFNI CGCG 1 cut(s) 338
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 1 cut(s) 328
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 4 cut(s) 35, 41, 302, 317
BstUI CGCG 1 cut(s) 338
BstV1I GCAGC 4 cut(s) 22, 41, 44, 268
BstV2I GAAGAC 1 cut(s) 137
BsuI GTATCC 1 cut(s) 67
BtsCI GGATG 1 cut(s) 96
Cac8I GCNNGC 1 cut(s) 46
CaiI CAGNNNCTG 2 cut(s) 35, 38
CseI GACGC 1 cut(s) 327
Csp6I GTAC 2 cut(s) 6, 276
CviJI RGCY 6 cut(s) 35, 44, 232, 244, 259, 296
CviKI_1 RGCY 6 cut(s) 35, 44, 232, 244, 259, 296
CviQI GTAC 2 cut(s) 6, 276
DdeI CTNAG 1 cut(s) 260
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
Eco31I GGTCTC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 254
EcoNI CCTNNNNNAGG 1 cut(s) 140
FaiI YATR 3 cut(s) 56, 179, 216
FbaI TGATCA 1 cut(s) 226
Fnu4HI GCNGC 4 cut(s) 30, 33, 36, 257
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 4 cut(s) 30, 33, 36, 257
GluI GCNGC 4 cut(s) 30, 33, 36, 257
GsuI CTGGAG 2 cut(s) 60, 273
HgaI GACGC 1 cut(s) 327
HinfI GANTC 2 cut(s) 250, 281
Hpy188III TCNNGA 1 cut(s) 290
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4IV ACGT 1 cut(s) 350
HpyCH4V TGCA 2 cut(s) 29, 48
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 41, 302, 317
HpyF3I CTNAG 1 cut(s) 260
HpySE526I ACGT 1 cut(s) 350
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 1 cut(s) 226
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 5 cut(s) 24, 149, 224, 258, 303
Lsp1109I GCAGC 4 cut(s) 22, 41, 44, 268
LweI GCATC 2 cut(s) 81, 89
MaeII ACGT 1 cut(s) 350
MaeIII GTNAC 1 cut(s) 58
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 1 cut(s) 142
MlyI GAGTC 1 cut(s) 290
MspA1I CMGCKG 3 cut(s) 35, 232, 259
MvnI CGCG 1 cut(s) 338
MwoI GCNNNNNNNGC 4 cut(s) 35, 41, 302, 317
NdeII GATC 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 58
PfeI GAWTC 1 cut(s) 250
PflFI GACNNNGTC 1 cut(s) 136
PkrI GCNGC 4 cut(s) 31, 34, 37, 258
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
PstNI CAGNNNCTG 2 cut(s) 35, 38
PsyI GACNNNGTC 1 cut(s) 136
PvuII CAGCTG 3 cut(s) 35, 232, 259
RsaI GTAC 2 cut(s) 7, 277
RsaNI GTAC 2 cut(s) 6, 276
SatI GCNGC 4 cut(s) 30, 33, 36, 257
Sau3AI GATC 1 cut(s) 226
SchI GAGTC 1 cut(s) 290
SetI ASST 7 cut(s) 37, 46, 234, 261, 277, 298, 353
SfaNI GCATC 2 cut(s) 81, 89
SsiI CCGC 1 cut(s) 320
TaaI ACNGT 1 cut(s) 52
TaiI ACGT 1 cut(s) 353
TfiI GAWTC 1 cut(s) 250
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 4 cut(s) 29, 32, 35, 256
Tsp45I GTSAC 1 cut(s) 58
Tth111I GACNNNGTC 1 cut(s) 136
XagI CCTNNNNNAGG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.