Rh4CG220600

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0002958
Physical Location & Seq
Forward (+)
45446633 .. 45448564
1932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG220600.1

Sequence Viewer

Length: 525 bp
ATGGGGTTTGATCTTGAATCTGTTGCAGAGGCAACCTCAGGGGCCATTGGAGCTCTGGTCAGCACCACCATCTTGTACCCACTTGATACCTGCAAGACCAAATACCAAGCTGAAGTCCGAGCTCAGAATCCGCTAAAGTACAGGAACATTTCTGATGTTTTCTGGGAAGCAATTTCTACCCGTCAGTTTTTTTTTAAGAGGTTGTACTTGGAGAAAAGTGGAAACAAAACCATGGGTACAAAAGCAAACTTGATAGTTGCAGCAGCTGCTGGAGCTTGCACAGTCATAGTGACAATGCCATTGGATACAGCATCATCAAGGATGCAAACAACATTTGATGGTCTTGGCATATCACTTCTTTTGACTTCTAACCCATCAATCCAGTATACGGTATTTGATCAGCTGAAGCAAAGGCTATTGATTGGGCAGCTGAGCAAAAGAACAGGTACAGAGTCATCTCCAGAAGCTCTTTCTGCTTTCGCTTTGGGTGCGGTCTCAAAGTGTATCGCGTCTTGCTTGACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

174

Amino Acids

18.75

Weight (kDa)

8.93

Isoelectric Point (pI)

34.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 6 - 58 6.1e-06 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 98
AccI GTMKAC 1 cut(s) 386
AccII CGCG 1 cut(s) 509
AciI CCGC 2 cut(s) 131, 491
AcuI CTGAAG 2 cut(s) 132, 425
AfaI GTAC 5 cut(s) 77, 140, 206, 238, 448
AfiI CCNNNNNNNGG 1 cut(s) 388
AgsI TTSAA 1 cut(s) 17
AluBI AGCT 8 cut(s) 53, 110, 122, 266, 275, 403, 430, 467
AluI AGCT 8 cut(s) 53, 110, 122, 266, 275, 403, 430, 467
Alw21I GWGCWC 2 cut(s) 55, 124
Alw26I GTCTC 1 cut(s) 499
AlwNI CAGNNNCTG 2 cut(s) 266, 269
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 4 cut(s) 260, 263, 266, 427
AspS9I GGNCC 1 cut(s) 42
AxyI CCTNAGG 1 cut(s) 37
BanII GRGCYC 2 cut(s) 55, 124
Bbv12I GWGCWC 2 cut(s) 55, 124
BbvI GCAGC 4 cut(s) 253, 272, 275, 439
BccI CCATC 3 cut(s) 77, 332, 382
BciVI GTATCC 1 cut(s) 298
BclI TGATCA 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 499
BfuAI ACCTGC 1 cut(s) 98
BfuI GTATCC 1 cut(s) 298
BisI GCNGC 4 cut(s) 261, 264, 267, 428
BlpI GCTNAGC 1 cut(s) 431
BlsI GCNGC 4 cut(s) 262, 265, 268, 429
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 1 cut(s) 43
BmsI GCATC 2 cut(s) 312, 320
BplI GAGNNNNNCTC 2 cut(s) 20, 52
BpmI CTGGAG 2 cut(s) 291, 444
Bpu1102I GCTNAGC 1 cut(s) 431
BsaI GGTCTC 1 cut(s) 499
BsaJI CCNNGG 1 cut(s) 231
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bsc4I CCNNNNNNNGG 1 cut(s) 388
Bse1I ACTGG 1 cut(s) 382
Bse21I CCTNAGG 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 1 cut(s) 327
BseLI CCNNNNNNNGG 1 cut(s) 388
BseMII CTCAG 3 cut(s) 51, 137, 422
BseNI ACTGG 1 cut(s) 382
BseXI GCAGC 4 cut(s) 253, 272, 275, 439
Bsh1236I CGCG 1 cut(s) 509
BshFI GGCC 1 cut(s) 44
BsiHKAI GWGCWC 2 cut(s) 55, 124
BslI CCNNNNNNNGG 1 cut(s) 388
BsmAI GTCTC 1 cut(s) 499
BsnI GGCC 1 cut(s) 44
Bso31I GGTCTC 1 cut(s) 499
Bsp1286I GDGCHC 2 cut(s) 55, 124
Bsp143I GATC 2 cut(s) 10, 397
Bsp1720I GCTNAGC 1 cut(s) 431
Bsp19I CCATGG 1 cut(s) 231
BspACI CCGC 2 cut(s) 131, 491
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 3 cut(s) 50, 136, 423
BspFNI CGCG 1 cut(s) 509
BspLI GGNNCC 1 cut(s) 43
BspMI ACCTGC 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 499
BsrI ACTGG 1 cut(s) 382
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 2 cut(s) 10, 397
BssNAI GTATAC 1 cut(s) 387
BssT1I CCWWGG 1 cut(s) 231
Bst1107I GTATAC 1 cut(s) 387
Bst4CI ACNGT 2 cut(s) 283, 391
BstAPI GCANNNNNTGC 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 3 cut(s) 37, 123, 431
BstDSI CCRYGG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 327
BstFNI CGCG 1 cut(s) 509
BstKTI GATC 2 cut(s) 13, 400
BstMAI GTCTC 1 cut(s) 499
BstMBI GATC 2 cut(s) 10, 397
BstMWI GCNNNNNNNGC 5 cut(s) 50, 266, 272, 473, 488
BstUI CGCG 1 cut(s) 509
BstV1I GCAGC 4 cut(s) 253, 272, 275, 439
BstZ17I GTATAC 1 cut(s) 387
Bsu36I CCTNAGG 1 cut(s) 37
BsuI GTATCC 1 cut(s) 298
BsuRI GGCC 1 cut(s) 44
BtgI CCRYGG 1 cut(s) 231
BtsCI GGATG 1 cut(s) 327
BveI ACCTGC 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 277
CaiI CAGNNNCTG 2 cut(s) 266, 269
Cfr13I GGNCC 1 cut(s) 42
CseI GACGC 1 cut(s) 498
Csp6I GTAC 5 cut(s) 76, 139, 205, 237, 447
CviAII CATG 1 cut(s) 232
CviQI GTAC 5 cut(s) 76, 139, 205, 237, 447
DdeI CTNAG 3 cut(s) 37, 123, 431
DpnI GATC 2 cut(s) 12, 399
DpnII GATC 2 cut(s) 10, 397
Ecl136II GAGCTC 2 cut(s) 53, 122
Eco130I CCWWGG 1 cut(s) 231
Eco24I GRGCYC 2 cut(s) 55, 124
Eco31I GGTCTC 1 cut(s) 499
Eco53kI GAGCTC 2 cut(s) 53, 122
Eco57I CTGAAG 2 cut(s) 132, 425
Eco81I CCTNAGG 1 cut(s) 37
EcoICRI GAGCTC 2 cut(s) 53, 122
EcoT14I CCWWGG 1 cut(s) 231
EcoT38I GRGCYC 2 cut(s) 55, 124
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 1 cut(s) 235
FaiI YATR 4 cut(s) 233, 287, 350, 387
FatI CATG 1 cut(s) 231
FbaI TGATCA 1 cut(s) 397
FblI GTMKAC 1 cut(s) 386
Fnu4HI GCNGC 4 cut(s) 261, 264, 267, 428
FokI GGATG 1 cut(s) 334
FriOI GRGCYC 2 cut(s) 55, 124
Fsp4HI GCNGC 4 cut(s) 261, 264, 267, 428
GluI GCNGC 4 cut(s) 261, 264, 267, 428
GsuI CTGGAG 2 cut(s) 291, 444
HaeIII GGCC 1 cut(s) 44
HgaI GACGC 1 cut(s) 498
Hin1II CATG 1 cut(s) 235
HinfI GANTC 3 cut(s) 17, 127, 452
Hpy166II GTNNAC 1 cut(s) 387
Hpy188I TCNGA 3 cut(s) 119, 126, 154
Hpy188III TCNNGA 2 cut(s) 14, 461
Hpy8I GTNNAC 1 cut(s) 387
HpyCH4III ACNGT 2 cut(s) 283, 391
HpyCH4IV ACGT 1 cut(s) 521
HpyCH4V TGCA 5 cut(s) 26, 93, 260, 279, 325
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 266, 272, 473, 488
HpyF3I CTNAG 3 cut(s) 37, 123, 431
HpySE526I ACGT 1 cut(s) 521
Hsp92II CATG 1 cut(s) 235
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 2 cut(s) 10, 397
LmnI GCTCC 2 cut(s) 50, 272
LpnPI CCDG 9 cut(s) 24, 41, 103, 127, 148, 255, 395, 429, 474
Lsp1109I GCAGC 4 cut(s) 253, 272, 275, 439
LweI GCATC 2 cut(s) 312, 320
MaeII ACGT 1 cut(s) 521
MaeIII GTNAC 1 cut(s) 289
MalI GATC 2 cut(s) 12, 399
MboI GATC 2 cut(s) 10, 397
MhlI GDGCHC 2 cut(s) 55, 124
MluCI AATT 1 cut(s) 171
MlyI GAGTC 1 cut(s) 461
MnlI CCTC 3 cut(s) 22, 46, 192
MseI TTAA 1 cut(s) 195
MspA1I CMGCKG 3 cut(s) 266, 403, 430
MvnI CGCG 1 cut(s) 509
MwoI GCNNNNNNNGC 5 cut(s) 50, 266, 272, 473, 488
NcoI CCATGG 1 cut(s) 231
NdeII GATC 2 cut(s) 10, 397
NlaIII CATG 1 cut(s) 235
NlaIV GGNNCC 1 cut(s) 43
NmuCI GTSAC 1 cut(s) 289
PfeI GAWTC 2 cut(s) 17, 127
PkrI GCNGC 4 cut(s) 262, 265, 268, 429
PleI GAGTC 1 cut(s) 460
PpsI GAGTC 1 cut(s) 460
Psp124BI GAGCTC 2 cut(s) 55, 124
PspN4I GGNNCC 1 cut(s) 43
PspPI GGNCC 1 cut(s) 42
PstNI CAGNNNCTG 2 cut(s) 266, 269
PvuII CAGCTG 3 cut(s) 266, 403, 430
RsaI GTAC 5 cut(s) 77, 140, 206, 238, 448
RsaNI GTAC 5 cut(s) 76, 139, 205, 237, 447
SacI GAGCTC 2 cut(s) 55, 124
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 4 cut(s) 261, 264, 267, 428
Sau3AI GATC 2 cut(s) 10, 397
Sau96I GGNCC 1 cut(s) 42
SchI GAGTC 1 cut(s) 461
SduI GDGCHC 2 cut(s) 55, 124
SfaNI GCATC 2 cut(s) 312, 320
Sse9I AATT 1 cut(s) 171
SsiI CCGC 2 cut(s) 131, 491
SstI GAGCTC 2 cut(s) 55, 124
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 2 cut(s) 283, 391
TaiI ACGT 1 cut(s) 524
TasI AATT 1 cut(s) 171
TatI WGTACW 2 cut(s) 138, 204
TfiI GAWTC 2 cut(s) 17, 127
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 4 cut(s) 260, 263, 266, 427
Tsp45I GTSAC 1 cut(s) 289
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.