AT5G27520

Peroxisomal adenine nucleotide carrier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002958
Physical Location & Seq
Reverse (-)
9714348 .. 9716418
2071 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G27520.1

Sequence Viewer

Length: 966 bp
ATGGGTGTTGATTTGGATTTGGAATCCATCTCCGAAGCCACCTCCGGAGCCATTGGATCTCTTCTCAGCACCACCATTTTATACCCTCTTGATACCTGTAAATCCAAGTTCCAAGCCGAGATTCGTGTTCGCGGTCAGCAGAAATACAGATATCTGTCAGATGTGTTTTGGGAAGCAATTTCATCAGGAAATGTTCTCTCCTTGTATCAAGGCCTTGGGACTAAGAATTTGCAGTCTTTTATTTCGTCCTTCATCTATTTCTATAGTTATAGCTATTTCAAGAGGTTACATTCCCAAAGGATTGGTTCTAAGTCTATTGGAACAAAGGCTAATCTCCTCATTGCTGCTGCTGCTGGTGCTTGTACCTCTGTTTTGACTCAACCTCTAGATACAGCTTCATCGAGGATGCAAACAAGCGAGTTTGGAAAATCTAAAGGGTTGTGGAAGACACTAACAGATGGTTCATGGGGAAATGCATTTGATGGCCTTGGGATTTCTCTTTTATTGACCTCGAATCCAGCAATTCAGTATACAGTGTTTGATCAGCTGAAACAGAACCTCCTTGAAAAAGGAAAGGCAAAATCCAACAAAGATTCTTCCCCTGTAGTTCTCTCTGCCTTTATGGCGTTTGTGTTAGGTGCGGTCTCAAAAAGTGCTGCCACCGTCATCACATATCCAGCAATCAGGTGCAAGGTTATGATTCAAGCAGCAGATGACTCGAAGGAAAATGAAGCGAAGAAGCCCCGAAAAAGAATCAGGAAAACGATTCCCGGGGTAGTCTATGCTATATGGAAAAAAGAAGGGATCTTAGGCTTCTTTAAAGGCTTGCAGGCTCAGATCTTAAAGACAGTTCTGAGCTCAGCATTACTACTAATGATCAAGGAGAAAATCACTGCAACCACATGGATTCTCATTCTAGCAATAAGAACTCTGTTTGTCACAAAGGCTAGATTGAAAAGTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005777 GO:0005778 GO:0005779 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0007275 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009056 GO:0009062 GO:0009791 GO:0009850 GO:0009987 GO:0010817 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016042 GO:0016054 GO:0019395 GO:0019752 GO:0019866 GO:0022857 GO:0030258 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032787 GO:0034220 GO:0034440 GO:0034641 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046483 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0055114 GO:0065007 GO:0065008 GO:0071702 GO:0071704 GO:0071705 GO:0072329 GO:0080024 GO:0090351 GO:0098588 GO:0098656 GO:0098805 GO:1901264 GO:1901360 GO:1901505 GO:1901564 GO:1901575 GO:1901679
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

321

Amino Acids

35.16

Weight (kDa)

9.86

Isoelectric Point (pI)

28.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 9 - 97 2.8e-13 Mitochondrial carrier protein
Mito_carr PF00153 110 - 190 2.9e-07 Mitochondrial carrier protein
Mito_carr PF00153 206 - 298 3.8e-14 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 530
AccII CGCG 1 cut(s) 132
AccIII TCCGGA 1 cut(s) 44
AciI CCGC 2 cut(s) 132, 641
AclWI GGATC 2 cut(s) 64, 812
AcsI RAATTY 1 cut(s) 226
AfaI GTAC 1 cut(s) 364
AgsI TTSAA 4 cut(s) 280, 566, 704, 955
AjuI GAANNNNNNNTTGG 2 cut(s) 105, 137
AluBI AGCT 4 cut(s) 273, 395, 547, 858
AluI AGCT 4 cut(s) 273, 395, 547, 858
Alw21I GWGCWC 1 cut(s) 860
Alw26I GTCTC 1 cut(s) 649
AlwI GGATC 2 cut(s) 64, 812
Ama87I CYCGRG 1 cut(s) 770
Aor13HI TCCGGA 1 cut(s) 44
AoxI GGCC 2 cut(s) 211, 484
ApeKI GCWGC 5 cut(s) 344, 347, 350, 656, 707
ApoI RAATTY 1 cut(s) 226
ArsI GACNNNNNNTTYG 2 cut(s) 211, 243
AsuC2I CCSGG 2 cut(s) 771, 772
AvaI CYCGRG 1 cut(s) 770
BanII GRGCYC 1 cut(s) 860
BbsI GAAGAC 1 cut(s) 452
Bbv12I GWGCWC 1 cut(s) 860
BbvI GCAGC 5 cut(s) 331, 334, 337, 643, 719
BccI CCATC 3 cut(s) 35, 452, 476
BcgI CGANNNNNNTGC 2 cut(s) 699, 733
BclI TGATCA 2 cut(s) 541, 876
BcnI CCSGG 2 cut(s) 771, 772
BcoDI GTCTC 1 cut(s) 649
BfaI CTAG 3 cut(s) 386, 917, 948
BfmI CTRYAG 2 cut(s) 262, 603
BglI GCCNNNNNGGC 1 cut(s) 623
BglII AGATCT 1 cut(s) 837
BisI GCNGC 5 cut(s) 345, 348, 351, 657, 708
BlpI GCTNAGC 1 cut(s) 859
BlsI GCNGC 5 cut(s) 346, 349, 352, 658, 709
Bme1390I CCNGG 2 cut(s) 771, 772
BmeT110I CYCGRG 1 cut(s) 770
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 2 cut(s) 771, 772
BmsI GCATC 1 cut(s) 396
BpiI GAAGAC 1 cut(s) 452
Bpu1102I GCTNAGC 1 cut(s) 859
BpuMI CCSGG 2 cut(s) 771, 772
BsaI GGTCTC 1 cut(s) 649
BsaJI CCNNGG 4 cut(s) 214, 487, 770, 771
BsaWI WCCGGW 1 cut(s) 44
BsaXI ACNNNNNCTCC 2 cut(s) 543, 573
Bse3DI GCAATG 1 cut(s) 339
BseAI TCCGGA 1 cut(s) 44
BseDI CCNNGG 4 cut(s) 214, 487, 770, 771
BseGI GGATG 1 cut(s) 411
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 4 cut(s) 79, 845, 848, 873
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 5 cut(s) 331, 334, 337, 643, 719
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 2 cut(s) 213, 486
BsiHKAI GWGCWC 1 cut(s) 860
BsiHKCI CYCGRG 1 cut(s) 770
BsiSI CCGG 2 cut(s) 45, 771
BslFI GGGAC 1 cut(s) 232
BsmAI GTCTC 1 cut(s) 649
BsmFI GGGAC 1 cut(s) 232
BsnI GGCC 2 cut(s) 213, 486
Bso31I GGTCTC 1 cut(s) 649
BsoBI CYCGRG 1 cut(s) 770
Bsp1286I GDGCHC 1 cut(s) 860
Bsp13I TCCGGA 1 cut(s) 44
Bsp143I GATC 5 cut(s) 56, 541, 804, 837, 876
Bsp1720I GCTNAGC 1 cut(s) 859
BspACI CCGC 2 cut(s) 132, 641
BspANI GGCC 2 cut(s) 213, 486
BspCNI CTCAG 4 cut(s) 78, 846, 847, 872
BspEI TCCGGA 1 cut(s) 44
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 49
BspPI GGATC 2 cut(s) 64, 812
BspTNI GGTCTC 1 cut(s) 649
BsrDI GCAATG 1 cut(s) 339
BssECI CCNNGG 4 cut(s) 214, 487, 770, 771
BssMI GATC 5 cut(s) 56, 541, 804, 837, 876
BssNAI GTATAC 1 cut(s) 531
BssT1I CCWWGG 2 cut(s) 214, 487
Bst1107I GTATAC 1 cut(s) 531
Bst4CI ACNGT 3 cut(s) 535, 664, 850
Bst6I CTCTTC 1 cut(s) 66
BstC8I GCNNGC 2 cut(s) 827, 831
BstDEI CTNAG 7 cut(s) 65, 222, 309, 808, 834, 854, 859
BstF5I GGATG 1 cut(s) 411
BstFNI CGCG 1 cut(s) 132
BstKTI GATC 5 cut(s) 59, 544, 807, 840, 879
BstMAI GTCTC 1 cut(s) 649
BstMBI GATC 5 cut(s) 56, 541, 804, 837, 876
BstMWI GCNNNNNNNGC 3 cut(s) 350, 356, 623
BstSCI CCNGG 2 cut(s) 769, 770
BstSFI CTRYAG 2 cut(s) 262, 603
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 5 cut(s) 331, 334, 337, 643, 719
BstV2I GAAGAC 1 cut(s) 452
BstX2I RGATCY 3 cut(s) 56, 804, 837
BstXI CCANNNNNNTGG 1 cut(s) 302
BstYI RGATCY 3 cut(s) 56, 804, 837
BstZ17I GTATAC 1 cut(s) 531
BsuRI GGCC 2 cut(s) 213, 486
BtsCI GGATG 1 cut(s) 411
BtsI GCAGTG 1 cut(s) 891
BtsIMutI CAGTG 2 cut(s) 540, 891
Cac8I GCNNGC 2 cut(s) 827, 831
Cfr9I CCCGGG 1 cut(s) 770
Csp6I GTAC 1 cut(s) 363
CviAII CATG 2 cut(s) 465, 903
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 7 cut(s) 65, 222, 309, 808, 834, 854, 859
DpnI GATC 5 cut(s) 58, 543, 806, 839, 878
DpnII GATC 5 cut(s) 56, 541, 804, 837, 876
DraI TTTAAA 1 cut(s) 820
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 858
Eco130I CCWWGG 2 cut(s) 214, 487
Eco147I AGGCCT 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 860
Eco31I GGTCTC 1 cut(s) 649
Eco32I GATATC 1 cut(s) 152
Eco53kI GAGCTC 1 cut(s) 858
Eco88I CYCGRG 1 cut(s) 770
EcoICRI GAGCTC 1 cut(s) 858
EcoRV GATATC 1 cut(s) 152
EcoT14I CCWWGG 2 cut(s) 214, 487
EcoT22I ATGCAT 1 cut(s) 478
EcoT38I GRGCYC 1 cut(s) 860
ErhI CCWWGG 2 cut(s) 214, 487
FaeI CATG 2 cut(s) 468, 906
FaqI GGGAC 1 cut(s) 232
FatI CATG 2 cut(s) 464, 902
FbaI TGATCA 2 cut(s) 541, 876
FblI GTMKAC 1 cut(s) 530
Fnu4HI GCNGC 5 cut(s) 345, 348, 351, 657, 708
FokI GGATG 1 cut(s) 418
FriOI GRGCYC 1 cut(s) 860
Fsp4HI GCNGC 5 cut(s) 345, 348, 351, 657, 708
FspBI CTAG 3 cut(s) 386, 917, 948
GluI GCNGC 5 cut(s) 345, 348, 351, 657, 708
HaeIII GGCC 2 cut(s) 213, 486
HapII CCGG 2 cut(s) 45, 771
Hin1II CATG 2 cut(s) 468, 906
HpaII CCGG 2 cut(s) 45, 771
Hpy166II GTNNAC 1 cut(s) 531
Hpy188I TCNGA 4 cut(s) 34, 160, 837, 855
Hpy188III TCNNGA 6 cut(s) 45, 89, 186, 280, 386, 757
Hpy8I GTNNAC 1 cut(s) 531
HpyAV CCTTC 3 cut(s) 259, 715, 794
HpyCH4III ACNGT 3 cut(s) 535, 664, 850
HpyCH4V TGCA 6 cut(s) 232, 409, 476, 690, 829, 896
HpyF10VI GCNNNNNNNGC 3 cut(s) 350, 356, 623
HpyF3I CTNAG 7 cut(s) 65, 222, 309, 808, 834, 854, 859
Hsp92II CATG 2 cut(s) 468, 906
Kpn2I TCCGGA 1 cut(s) 44
Ksp22I TGATCA 2 cut(s) 541, 876
Kzo9I GATC 5 cut(s) 56, 541, 804, 837, 876
LmnI GCTCC 1 cut(s) 47
Lsp1109I GCAGC 5 cut(s) 331, 334, 337, 643, 719
LweI GCATC 1 cut(s) 396
MaeI CTAG 3 cut(s) 386, 917, 948
MaeIII GTNAC 2 cut(s) 285, 937
MalI GATC 5 cut(s) 58, 543, 806, 839, 878
MboI GATC 5 cut(s) 56, 541, 804, 837, 876
MboII GAAGA 4 cut(s) 53, 457, 588, 748
MflI RGATCY 3 cut(s) 56, 804, 837
MhlI GDGCHC 1 cut(s) 860
MluCI AATT 3 cut(s) 177, 226, 522
MlyI GAGTC 2 cut(s) 370, 710
MmeI TCCRAC 1 cut(s) 609
MnlI CCTC 9 cut(s) 52, 96, 276, 347, 376, 393, 396, 520, 569
Mph1103I ATGCAT 1 cut(s) 478
MroI TCCGGA 1 cut(s) 44
MseI TTAA 2 cut(s) 819, 842
MspA1I CMGCKG 1 cut(s) 547
MspI CCGG 2 cut(s) 45, 771
MspR9I CCNGG 2 cut(s) 771, 772
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 3 cut(s) 350, 356, 623
NciI CCSGG 2 cut(s) 771, 772
NdeII GATC 5 cut(s) 56, 541, 804, 837, 876
NlaIII CATG 2 cut(s) 468, 906
NlaIV GGNNCC 1 cut(s) 49
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 937
NsiI ATGCAT 1 cut(s) 478
PceI AGGCCT 1 cut(s) 213
PfeI GAWTC 8 cut(s) 23, 121, 514, 593, 700, 753, 766, 907
PkrI GCNGC 5 cut(s) 346, 349, 352, 658, 709
PleI GAGTC 2 cut(s) 370, 710
PpsI GAGTC 2 cut(s) 370, 710
Psp124BI GAGCTC 1 cut(s) 860
PspN4I GGNNCC 1 cut(s) 49
PsuI RGATCY 3 cut(s) 56, 804, 837
PvuII CAGCTG 1 cut(s) 547
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
SacI GAGCTC 1 cut(s) 860
SaqAI TTAA 2 cut(s) 819, 842
SatI GCNGC 5 cut(s) 345, 348, 351, 657, 708
Sau3AI GATC 5 cut(s) 56, 541, 804, 837, 876
SchI GAGTC 2 cut(s) 370, 710
ScrFI CCNGG 2 cut(s) 771, 772
SduI GDGCHC 1 cut(s) 860
SfaNI GCATC 1 cut(s) 396
SfcI CTRYAG 2 cut(s) 262, 603
SmaI CCCGGG 1 cut(s) 772
Sse9I AATT 3 cut(s) 177, 226, 522
SseBI AGGCCT 1 cut(s) 213
SsiI CCGC 2 cut(s) 132, 641
SspMI CTAG 3 cut(s) 386, 917, 948
SstI GAGCTC 1 cut(s) 860
StuI AGGCCT 1 cut(s) 213
StyD4I CCNGG 2 cut(s) 769, 770
StyI CCWWGG 2 cut(s) 214, 487
TaaI ACNGT 3 cut(s) 535, 664, 850
TaqI TCGA 3 cut(s) 401, 512, 719
TasI AATT 3 cut(s) 177, 226, 522
TfiI GAWTC 8 cut(s) 23, 121, 514, 593, 700, 753, 766, 907
Tru1I TTAA 2 cut(s) 819, 842
Tru9I TTAA 2 cut(s) 819, 842
TscAI CASTG 2 cut(s) 540, 898
TseFI GTSAC 1 cut(s) 937
TseI GCWGC 5 cut(s) 344, 347, 350, 656, 707
Tsp45I GTSAC 1 cut(s) 937
TspDTI ATGAA 5 cut(s) 171, 241, 387, 453, 744
TspMI CCCGGG 1 cut(s) 770
TspRI CASTG 2 cut(s) 540, 898
XapI RAATTY 1 cut(s) 226
XbaI TCTAGA 1 cut(s) 385
XmaI CCCGGG 1 cut(s) 770
XmiI GTMKAC 1 cut(s) 530
XspI CTAG 3 cut(s) 386, 917, 948
Zsp2I ATGCAT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.