Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002958

Physical Location & Seq

Genomic Coordinates Reverse (-)

18510977 .. 18514766

Gene Structure 3790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g14900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGGTTTGATCTTGAATCTGTTGCGGAGGCAACCTCGGGGGCCATTGGAGCTCTGGTCAGCACCACCATCTTGTACCCACTTGATACTTGCAAGACCAAATACCAAGCTGAAGTCCGAGCTCAGAATCAGCAGAAGTACAGGAACATTTCTGATGTTTTTTGGGAAGCAATTTCTACCCGTCAGGTGCTTTCATTATACCAGGGCCTTGGGACAAAGAACCTGCAGTCCTTTATATCACAGTTCATCTACTTCTATGGATATAGTTTTTTTAAGAGGTTGTACTTGAAGAAAAGTGGAAACAAAACCATGGGAACAAAAGCGAATTTGATAGTTGCCGCCGCTGCTGGGGCTTGTACAGTCATAGTGACACAGCCGTTGGATACAGCATCATCAAGGATGCAAACGAGTGAGTTTGGGAAATCCAAAGGACTCTGGAAGACCCTGTCAGAGGGAACTTGGATCGAGGCGTTTGATGGTCTTGGCATATCACTTCTTTTGACTTCTAACCCGTCGATCCAGTATACGGTATTTGATCAGCTGAAACAAAAGCTATTAATTGGGCAGCTGAGCAAACGAACGGGTACAGAGTCATCTCCAGAAGCTCTTTCTGCCTTTTCTGCTTTCGCTTTGGGTGCTGTCTCAAAGTGTATCGCGTCTTGCTTGACATACCCAGCCATCAGGTGCAAGGTGATGATTCAAGCTGCAGATGACGATGAAGAAGGTAGCAATGAAGTTCAAGAAAAGTCGCATAAAACCAAAAAGACAGTTTTGGATGCCTTTTATGCCATTTGGAGAAGAGAGGGGCCACTGGGTTTCTTCAAAGGATTACAGGCTCAGATACTAAAAACTGTTCTAAGCTCGGCATTGCTATTGATGATAAAGGAGAAGATCACAAAGAGCACCTGGGTCCTGTTGATTGCGCTGAAGAGATTTCTATTTCTCAAGCAAAGCAGATTAAAGAATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

324

Amino Acids

35.73

Weight (kDa)

9.53

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	6 - 98	2.4e-16	Mitochondrial carrier protein
Mito_carr	PF00153	108 - 185	1.3e-06	Mitochondrial carrier protein
Mito_carr	PF00153	203 - 300	1e-15	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05290 AT5G27520
fragaria_vesca	FvH4_4g14900 FvH4_6g05760
malus_domestica	MD04G1205900.v1.1 MD12G1220000.v1.1 MD13G1186400.v1.1 MD16G1187100.v1.1
prunus_persica	Prupe.1G154100_v2.0.a1 Prupe.1G154100_v2.0.a1 Prupe.6G326700_v2.0.a1
pyrus_communis	pycom04g18220 pycom12g20540 pycom13g16130 pycom16g15710
rosa_chinensis	RchiOBHm_Chr3g0454671 RchiOBHm_Chr4g0417191 RchiOBHm_Chr4g0417301
rosa_laevigata	RLG00000007919 RLG00000025425
rosa_multiflora	Rmu_sc0000646.1_g000002 Rmu_sc0002129.1_g000048
rosa_roxburghii	Rroxscaffold_5G00361050 Rroxscaffold_6G00424870
rosa_rugosa	Rorug03G0001100.1 Rorug04G0146200 Rorug04G0146600
rosa_samantha	Rh3AG061000 Rh3CG061700 Rh3DG062600 Rh4AG209400 Rh4AG210200 Rh4CG220600 Rh4CG221200 Rh4DG207200 Rh4DG208200
rosa_wichuraiana	Rw3G004750 Rw4G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	231
AccI	GTMKAC	1 cut(s)	524
AccII	CGCG	1 cut(s)	656
AciI	CCGC	3 cut(s)	26, 339, 342
AclWI	GGATC	2 cut(s)	470, 511
AcsI	RAATTY	1 cut(s)	325
AcuI	CTGAAG	2 cut(s)	132, 947
AfaI	GTAC	5 cut(s)	77, 140, 284, 358, 586
AfiI	CCNNNNNNNGG	3 cut(s)	348, 451, 526
AgsI	TTSAA	5 cut(s)	17, 289, 701, 740, 823
AjnI	CCWGG	2 cut(s)	201, 905
AloI	GAACNNNNNNTCC	2 cut(s)	212, 244
AluBI	AGCT	9 cut(s)	53, 110, 122, 541, 553, 568, 605, 704, 861
AluI	AGCT	9 cut(s)	53, 110, 122, 541, 553, 568, 605, 704, 861
Alw21I	GWGCWC	3 cut(s)	55, 124, 905
Alw26I	GTCTC	1 cut(s)	646
AlwI	GGATC	2 cut(s)	470, 511
Ama87I	CYCGRG	1 cut(s)	37
AoxI	GGCC	3 cut(s)	42, 205, 806
ApeKI	GCWGC	3 cut(s)	344, 565, 704
ApoI	RAATTY	1 cut(s)	325
AseI	ATTAAT	1 cut(s)	557
AspLEI	GCGC	1 cut(s)	925
AspS9I	GGNCC	4 cut(s)	42, 205, 806, 910
AsuHPI	GGTGA	1 cut(s)	703
AvaI	CYCGRG	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	910
BanII	GRGCYC	2 cut(s)	55, 124
BbsI	GAAGAC	1 cut(s)	446
Bbv12I	GWGCWC	3 cut(s)	55, 124, 905
BbvI	GCAGC	3 cut(s)	331, 577, 691
BccI	CCATC	3 cut(s)	77, 470, 686
BceAI	ACGGC	1 cut(s)	361
BciT130I	CCWGG	2 cut(s)	203, 907
BciVI	GTATCC	1 cut(s)	376
BclI	TGATCA	1 cut(s)	535
BcoDI	GTCTC	1 cut(s)	646
BfmI	CTRYAG	2 cut(s)	224, 705
BfuAI	ACCTGC	1 cut(s)	231
BfuI	GTATCC	1 cut(s)	376
BisI	GCNGC	5 cut(s)	339, 342, 345, 566, 705
BlpI	GCTNAGC	1 cut(s)	569
BlsI	GCNGC	5 cut(s)	340, 343, 346, 567, 706
Bme1390I	CCNGG	2 cut(s)	203, 907
Bme18I	GGWCC	1 cut(s)	910
BmeT110I	CYCGRG	1 cut(s)	37
BmgT120I	GGNCC	4 cut(s)	42, 205, 806, 910
BmiI	GGNNCC	3 cut(s)	43, 807, 911
BmrFI	CCNGG	2 cut(s)	203, 907
BmrI	ACTGGG	1 cut(s)	821
BmsI	GCATC	3 cut(s)	390, 398, 766
BmuI	ACTGGG	1 cut(s)	821
BpiI	GAAGAC	1 cut(s)	446
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	1 cut(s)	582
Bpu1102I	GCTNAGC	1 cut(s)	569
BpuEI	CTTGAG	1 cut(s)	929
BsaJI	CCNNGG	5 cut(s)	36, 202, 208, 309, 906
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	3 cut(s)	348, 451, 526
Bse1I	ACTGG	2 cut(s)	520, 816
Bse3DI	GCAATG	2 cut(s)	736, 866
BseBI	CCWGG	2 cut(s)	203, 907
BseDI	CCNNGG	5 cut(s)	36, 202, 208, 309, 906
BseGI	GGATG	2 cut(s)	405, 781
BseLI	CCNNNNNNNGG	3 cut(s)	348, 451, 526
BseMI	GCAATG	2 cut(s)	736, 866
BseMII	CTCAG	3 cut(s)	137, 560, 851
BseNI	ACTGG	2 cut(s)	520, 816
BseXI	GCAGC	3 cut(s)	331, 577, 691
BseYI	CCCAGC	2 cut(s)	347, 673
Bsh1236I	CGCG	1 cut(s)	656
BshFI	GGCC	3 cut(s)	44, 207, 808
BsiHKAI	GWGCWC	3 cut(s)	55, 124, 905
BsiHKCI	CYCGRG	1 cut(s)	37
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	3 cut(s)	348, 451, 526
BsmAI	GTCTC	1 cut(s)	646
BsmFI	GGGAC	1 cut(s)	226
BsmI	GAATGC	1 cut(s)	970
BsnI	GGCC	3 cut(s)	44, 207, 808
BsoBI	CYCGRG	1 cut(s)	37
Bsp1286I	GDGCHC	3 cut(s)	55, 124, 905
Bsp1407I	TGTACA	1 cut(s)	356
Bsp143I	GATC	5 cut(s)	10, 462, 516, 535, 891
Bsp1720I	GCTNAGC	1 cut(s)	569
Bsp19I	CCATGG	1 cut(s)	309
BspACI	CCGC	3 cut(s)	26, 339, 342
BspANI	GGCC	3 cut(s)	44, 207, 808
BspCNI	CTCAG	3 cut(s)	136, 561, 850
BspFNI	CGCG	1 cut(s)	656
BspLI	GGNNCC	3 cut(s)	43, 807, 911
BspMAI	CTGCAG	2 cut(s)	228, 709
BspMI	ACCTGC	1 cut(s)	231
BspPI	GGATC	2 cut(s)	470, 511
BsrDI	GCAATG	2 cut(s)	736, 866
BsrGI	TGTACA	1 cut(s)	356
BsrI	ACTGG	2 cut(s)	520, 816
BssECI	CCNNGG	5 cut(s)	36, 202, 208, 309, 906
BssMI	GATC	5 cut(s)	10, 462, 516, 535, 891
BssNAI	GTATAC	1 cut(s)	525
BssT1I	CCWWGG	2 cut(s)	208, 309
Bst1107I	GTATAC	1 cut(s)	525
Bst2UI	CCWGG	2 cut(s)	203, 907
Bst4CI	ACNGT	5 cut(s)	243, 361, 529, 769, 853
Bst6I	CTCTTC	2 cut(s)	793, 923
BstAUI	TGTACA	1 cut(s)	356
BstDEI	CTNAG	5 cut(s)	123, 569, 837, 857, 969
BstDSI	CCRYGG	1 cut(s)	309
BstENI	CCTNNNNNAGG	1 cut(s)	449
BstF5I	GGATG	2 cut(s)	405, 781
BstFNI	CGCG	1 cut(s)	656
BstHHI	GCGC	1 cut(s)	925
BstKTI	GATC	5 cut(s)	13, 465, 519, 538, 894
BstMAI	GTCTC	1 cut(s)	646
BstMBI	GATC	5 cut(s)	10, 462, 516, 535, 891
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 344, 350, 611, 620, 635, 785
BstNI	CCWGG	2 cut(s)	203, 907
BstSCI	CCNGG	2 cut(s)	201, 905
BstSFI	CTRYAG	2 cut(s)	224, 705
BstUI	CGCG	1 cut(s)	656
BstV1I	GCAGC	3 cut(s)	331, 577, 691
BstV2I	GAAGAC	1 cut(s)	446
BstXI	CCANNNNNNTGG	1 cut(s)	209
BstZ17I	GTATAC	1 cut(s)	525
BsuI	GTATCC	1 cut(s)	376
BsuRI	GGCC	3 cut(s)	44, 207, 808
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	405, 781
BtsIMutI	CAGTG	1 cut(s)	809
BveI	ACCTGC	1 cut(s)	231
CfoI	GCGC	1 cut(s)	925
Cfr13I	GGNCC	4 cut(s)	42, 205, 806, 910
CseI	GACGC	1 cut(s)	645
Csp6I	GTAC	5 cut(s)	76, 139, 283, 357, 585
CviAII	CATG	1 cut(s)	310
CviQI	GTAC	5 cut(s)	76, 139, 283, 357, 585
DdeI	CTNAG	5 cut(s)	123, 569, 837, 857, 969
DpnI	GATC	5 cut(s)	12, 464, 518, 537, 893
DpnII	GATC	5 cut(s)	10, 462, 516, 535, 891
Eam1104I	CTCTTC	2 cut(s)	793, 923
EarI	CTCTTC	2 cut(s)	793, 923
Ecl136II	GAGCTC	2 cut(s)	53, 122
Eco130I	CCWWGG	2 cut(s)	208, 309
Eco24I	GRGCYC	2 cut(s)	55, 124
Eco47I	GGWCC	1 cut(s)	910
Eco53kI	GAGCTC	2 cut(s)	53, 122
Eco57I	CTGAAG	2 cut(s)	132, 947
Eco88I	CYCGRG	1 cut(s)	37
EcoICRI	GAGCTC	2 cut(s)	53, 122
EcoNI	CCTNNNNNAGG	1 cut(s)	449
EcoO109I	RGGNCCY	2 cut(s)	205, 910
EcoRII	CCWGG	2 cut(s)	201, 905
EcoT14I	CCWWGG	2 cut(s)	208, 309
EcoT38I	GRGCYC	2 cut(s)	55, 124
ErhI	CCWWGG	2 cut(s)	208, 309
FaeI	CATG	1 cut(s)	313
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	1 cut(s)	309
FbaI	TGATCA	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	524
Fnu4HI	GCNGC	5 cut(s)	339, 342, 345, 566, 705
FokI	GGATG	2 cut(s)	412, 788
FriOI	GRGCYC	2 cut(s)	55, 124
Fsp4HI	GCNGC	5 cut(s)	339, 342, 345, 566, 705
GlaI	GCGC	1 cut(s)	924
GluI	GCNGC	5 cut(s)	339, 342, 345, 566, 705
GsaI	CCCAGC	2 cut(s)	351, 677
GsuI	CTGGAG	1 cut(s)	582
HaeIII	GGCC	3 cut(s)	44, 207, 808
HgaI	GACGC	1 cut(s)	645
HhaI	GCGC	1 cut(s)	925
Hin1II	CATG	1 cut(s)	313
Hin6I	GCGC	1 cut(s)	923
HinP1I	GCGC	1 cut(s)	923
HinfI	GANTC	5 cut(s)	17, 127, 432, 590, 697
HphI	GGTGA	1 cut(s)	703
Hpy166II	GTNNAC	1 cut(s)	525
Hpy188I	TCNGA	5 cut(s)	119, 126, 154, 451, 840
Hpy188III	TCNNGA	4 cut(s)	14, 436, 599, 740
Hpy8I	GTNNAC	1 cut(s)	525
Hpy99I	CGWCG	1 cut(s)	517
HpyAV	CCTTC	1 cut(s)	716
HpyCH4III	ACNGT	5 cut(s)	243, 361, 529, 769, 853
HpyCH4V	TGCA	5 cut(s)	93, 226, 403, 687, 707
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 344, 350, 611, 620, 635, 785
HpyF3I	CTNAG	5 cut(s)	123, 569, 837, 857, 969
Hsp92II	CATG	1 cut(s)	313
HspAI	GCGC	1 cut(s)	923
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	5 cut(s)	10, 462, 516, 535, 891
LmnI	GCTCC	1 cut(s)	50
Lsp1109I	GCAGC	3 cut(s)	331, 577, 691
LweI	GCATC	3 cut(s)	390, 398, 766
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	5 cut(s)	12, 464, 518, 537, 893
MboI	GATC	5 cut(s)	10, 462, 516, 535, 891
MboII	GAAGA	7 cut(s)	301, 451, 731, 810, 811, 901, 940
MhlI	GDGCHC	3 cut(s)	55, 124, 905
MluCI	AATT	3 cut(s)	171, 325, 558
MlyI	GAGTC	2 cut(s)	426, 599
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	6 cut(s)	22, 46, 270, 445, 460, 796
MseI	TTAA	3 cut(s)	273, 557, 959
MspA1I	CMGCKG	3 cut(s)	344, 541, 568
MspR9I	CCNGG	2 cut(s)	203, 907
Mva1269I	GAATGC	1 cut(s)	970
MvaI	CCWGG	2 cut(s)	203, 907
MvnI	CGCG	1 cut(s)	656
MwoI	GCNNNNNNNGC	7 cut(s)	50, 344, 350, 611, 620, 635, 785
NcoI	CCATGG	1 cut(s)	309
NdeII	GATC	5 cut(s)	10, 462, 516, 535, 891
NlaIII	CATG	1 cut(s)	313
NlaIV	GGNNCC	3 cut(s)	43, 807, 911
NmeAIII	GCCGAG	1 cut(s)	842
NmuCI	GTSAC	1 cut(s)	367
PctI	GAATGC	1 cut(s)	970
PfeI	GAWTC	3 cut(s)	17, 127, 697
PflFI	GACNNNGTC	1 cut(s)	445
PkrI	GCNGC	5 cut(s)	340, 343, 346, 567, 706
PleI	GAGTC	2 cut(s)	426, 598
PpsI	GAGTC	2 cut(s)	426, 598
PpuMI	RGGWCCY	1 cut(s)	910
PshBI	ATTAAT	1 cut(s)	557
Psp124BI	GAGCTC	2 cut(s)	55, 124
Psp5II	RGGWCCY	1 cut(s)	910
Psp6I	CCWGG	2 cut(s)	201, 905
PspFI	CCCAGC	2 cut(s)	347, 673
PspGI	CCWGG	2 cut(s)	201, 905
PspN4I	GGNNCC	3 cut(s)	43, 807, 911
PspPI	GGNCC	4 cut(s)	42, 205, 806, 910
PspPPI	RGGWCCY	1 cut(s)	910
PstI	CTGCAG	2 cut(s)	228, 709
PsyI	GACNNNGTC	1 cut(s)	445
PvuII	CAGCTG	2 cut(s)	541, 568
RsaI	GTAC	5 cut(s)	77, 140, 284, 358, 586
RsaNI	GTAC	5 cut(s)	76, 139, 283, 357, 585
SacI	GAGCTC	2 cut(s)	55, 124
SaqAI	TTAA	3 cut(s)	273, 557, 959
SatI	GCNGC	5 cut(s)	339, 342, 345, 566, 705
Sau3AI	GATC	5 cut(s)	10, 462, 516, 535, 891
Sau96I	GGNCC	4 cut(s)	42, 205, 806, 910
SchI	GAGTC	2 cut(s)	426, 599
ScrFI	CCNGG	2 cut(s)	203, 907
SduI	GDGCHC	3 cut(s)	55, 124, 905
SfaNI	GCATC	3 cut(s)	390, 398, 766
SfcI	CTRYAG	2 cut(s)	224, 705
SinI	GGWCC	1 cut(s)	910
SmlI	CTYRAG	1 cut(s)	944
SmoI	CTYRAG	1 cut(s)	944
Sse9I	AATT	3 cut(s)	171, 325, 558
SsiI	CCGC	3 cut(s)	26, 339, 342
SstI	GAGCTC	2 cut(s)	55, 124
StyD4I	CCNGG	2 cut(s)	201, 905
StyI	CCWWGG	2 cut(s)	208, 309
TaaI	ACNGT	5 cut(s)	243, 361, 529, 769, 853
TaqI	TCGA	2 cut(s)	465, 515
TasI	AATT	3 cut(s)	171, 325, 558
TatI	WGTACW	3 cut(s)	138, 282, 356
TauI	GCSGC	2 cut(s)	341, 344
TfiI	GAWTC	3 cut(s)	17, 127, 697
Tru1I	TTAA	3 cut(s)	273, 557, 959
Tru9I	TTAA	3 cut(s)	273, 557, 959
TscAI	CASTG	1 cut(s)	816
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	3 cut(s)	344, 565, 704
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	4 cut(s)	183, 235, 732, 747
TspRI	CASTG	1 cut(s)	816
Tth111I	GACNNNGTC	1 cut(s)	445
VpaK11BI	GGWCC	1 cut(s)	910
VspI	ATTAAT	1 cut(s)	557
XagI	CCTNNNNNAGG	1 cut(s)	449
XapI	RAATTY	1 cut(s)	325
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.