Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002958

Physical Location & Seq

Genomic Coordinates Reverse (-)

16163129 .. 16166078

Gene Structure 2950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1187100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGATTTGATCTGGAATCAGTTGCAGAGGCAACTTCAGGCGCCATTGGAGCTCTGGTCAGCACCACCATCTTGTACCCTCTCGACACCTGCAAGACCAAGTACCAAGCTGAAGTCCGAGCTCAGCATCAGCAGAAATACAGGAACATTTCTGATGTTTTATGGGAAGCAATTTCTACCCGTCAGGTGCTTTCTTTATACCAGGGCCTTGGGACAAAGAACTTTCAGTCCTTTATTTCACAGTTCATCTACTTCTATGGATACAGTTTTTTTAAGAGGTTATACTTGGAGAAAAGTGGAAATAAAAACATGGGAACAAGAGCAAACTTGATTGTTGCAGCTGCTGCCGGGGCTTGTACAGTCATAGTAACACAGCCCTTGGATACTGCATCCTCAAAGATGCAGACAAGTGAGTTTGGAAAATCCAAAGGACTCTGGAAGACGCTTTCGGAGGGAACTTGGATTGAGGCATTTGATGGTCTCGGCATATCTCTTCTTTTGACATCTAACCCATCTATCCAGTACACAGTATTTGATCAGCTGAAACAAAGACTTCTGAGGGGGCAGCTGAGAAAAAGAACAGGTACAGAGTCATCTCCAGAAGCCCTTTCTGCCTTTTCCGCTTTCGTATTGGGTGCCGTCTCAAAGTGTATTGCGTCCTGCTTGACATACCCAGCCATCAGGTGCAAGGTCATGATTCAAGCTGCAGAAGAAGATGAAGAGGGCAGCAACGGAGCTCAAAGCGAATCTCAAAAGTCCCAAAAGACAGTTTCAGGTGCATTTTATGCCATTTGGAAACGAGAGGGACCGTTGGGTTTCTTCAAAGGATTACAGGCGCAGATACTGAAAACTGTGCTGAGCTCGGCATTGCTTTTGATGGTAAAGGAAAAGATCACAAAGACAACATGGGTCCTATTGCTTGCTCTAAGGAGGTATTTGTTTGTGAACAAGAGCAGATTAAAGAGCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

324

Amino Acids

35.67

Weight (kDa)

9.57

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	6 - 98	1.6e-15	Mitochondrial carrier protein
Mito_carr	PF00153	106 - 187	3e-06	Mitochondrial carrier protein
Mito_carr	PF00153	203 - 300	4.6e-15	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05290 AT5G27520
fragaria_vesca	FvH4_4g14900 FvH4_6g05760
malus_domestica	MD04G1205900.v1.1 MD12G1220000.v1.1 MD13G1186400.v1.1 MD16G1187100.v1.1
prunus_persica	Prupe.1G154100_v2.0.a1 Prupe.1G154100_v2.0.a1 Prupe.6G326700_v2.0.a1
pyrus_communis	pycom04g18220 pycom12g20540 pycom13g16130 pycom16g15710
rosa_chinensis	RchiOBHm_Chr3g0454671 RchiOBHm_Chr4g0417191 RchiOBHm_Chr4g0417301
rosa_laevigata	RLG00000007919 RLG00000025425
rosa_multiflora	Rmu_sc0000646.1_g000002 Rmu_sc0002129.1_g000048
rosa_roxburghii	Rroxscaffold_5G00361050 Rroxscaffold_6G00424870
rosa_rugosa	Rorug03G0001100.1 Rorug04G0146200 Rorug04G0146600
rosa_samantha	Rh3AG061000 Rh3CG061700 Rh3DG062600 Rh4AG209400 Rh4AG210200 Rh4CG220600 Rh4CG221200 Rh4DG207200 Rh4DG208200
rosa_wichuraiana	Rw3G004750 Rw4G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	98
Acc36I	ACCTGC	1 cut(s)	98
AccB1I	GGYRCC	2 cut(s)	41, 635
AciI	CCGC	1 cut(s)	621
AcuI	CTGAAG	2 cut(s)	21, 132
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	5 cut(s)	77, 104, 358, 524, 586
AfeI	AGCGCT	1 cut(s)	967
AgsI	TTSAA	2 cut(s)	701, 823
AjnI	CCWGG	1 cut(s)	201
AloI	GAACNNNNNNTCC	2 cut(s)	212, 244
AluBI	AGCT	9 cut(s)	53, 110, 122, 341, 541, 568, 704, 737, 861
AluI	AGCT	9 cut(s)	53, 110, 122, 341, 541, 568, 704, 737, 861
Alw21I	GWGCWC	4 cut(s)	55, 124, 739, 863
Alw26I	GTCTC	2 cut(s)	485, 646
AlwNI	CAGNNNCTG	2 cut(s)	344, 844
Aor51HI	AGCGCT	1 cut(s)	967
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	6 cut(s)	338, 341, 344, 565, 704, 726
AspLEI	GCGC	3 cut(s)	44, 838, 968
AspS9I	GGNCC	3 cut(s)	205, 806, 910
AsuC2I	CCSGG	1 cut(s)	349
AvaII	GGWCC	2 cut(s)	806, 910
BanI	GGYRCC	2 cut(s)	41, 635
BanII	GRGCYC	4 cut(s)	55, 124, 739, 863
BbsI	GAAGAC	1 cut(s)	446
Bbv12I	GWGCWC	4 cut(s)	55, 124, 739, 863
BbvI	GCAGC	6 cut(s)	328, 331, 350, 577, 691, 738
BccI	CCATC	5 cut(s)	77, 470, 520, 686, 871
BceAI	ACGGC	1 cut(s)	623
BciT130I	CCWGG	1 cut(s)	203
BciVI	GTATCC	2 cut(s)	254, 376
BclI	TGATCA	1 cut(s)	535
BcnI	CCSGG	1 cut(s)	349
BcoDI	GTCTC	2 cut(s)	485, 646
BfmI	CTRYAG	1 cut(s)	705
BfoI	RGCGCY	2 cut(s)	45, 969
BfuAI	ACCTGC	1 cut(s)	98
BfuI	GTATCC	2 cut(s)	254, 376
BisI	GCNGC	6 cut(s)	339, 342, 345, 566, 705, 727
BlpI	GCTNAGC	2 cut(s)	123, 857
BlsI	GCNGC	6 cut(s)	340, 343, 346, 567, 706, 728
Bme1390I	CCNGG	2 cut(s)	203, 349
Bme18I	GGWCC	2 cut(s)	806, 910
BmgT120I	GGNCC	3 cut(s)	205, 806, 910
BmiI	GGNNCC	4 cut(s)	43, 637, 807, 911
BmrFI	CCNGG	2 cut(s)	203, 349
BmsI	GCATC	3 cut(s)	136, 390, 398
BpiI	GAAGAC	1 cut(s)	446
BpmI	CTGGAG	1 cut(s)	582
Bpu1102I	GCTNAGC	2 cut(s)	123, 857
BpuMI	CCSGG	1 cut(s)	349
BsaHI	GRCGYC	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	485
BsaJI	CCNNGG	4 cut(s)	202, 208, 348, 378
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bse1I	ACTGG	1 cut(s)	520
Bse3DI	GCAATG	1 cut(s)	866
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	4 cut(s)	202, 208, 348, 378
BseGI	GGATG	1 cut(s)	389
BseMI	GCAATG	1 cut(s)	866
BseMII	CTCAG	4 cut(s)	137, 548, 560, 848
BseNI	ACTGG	1 cut(s)	520
BseXI	GCAGC	6 cut(s)	328, 331, 350, 577, 691, 738
BseYI	CCCAGC	1 cut(s)	673
BshFI	GGCC	1 cut(s)	207
BshNI	GGYRCC	2 cut(s)	41, 635
BsiHKAI	GWGCWC	4 cut(s)	55, 124, 739, 863
BsiSI	CCGG	1 cut(s)	348
BslFI	GGGAC	3 cut(s)	226, 742, 819
BsmAI	GTCTC	2 cut(s)	485, 646
BsmBI	CGTCTC	1 cut(s)	646
BsmFI	GGGAC	3 cut(s)	226, 742, 819
BsnI	GGCC	1 cut(s)	207
Bso31I	GGTCTC	1 cut(s)	485
Bsp1286I	GDGCHC	4 cut(s)	55, 124, 739, 863
Bsp1407I	TGTACA	1 cut(s)	356
Bsp143I	GATC	3 cut(s)	10, 535, 891
Bsp1720I	GCTNAGC	2 cut(s)	123, 857
BspACI	CCGC	1 cut(s)	621
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	4 cut(s)	136, 549, 561, 849
BspHI	TCATGA	1 cut(s)	693
BspLI	GGNNCC	4 cut(s)	43, 637, 807, 911
BspMAI	CTGCAG	1 cut(s)	709
BspMI	ACCTGC	1 cut(s)	98
BspT107I	GGYRCC	2 cut(s)	41, 635
BspTNI	GGTCTC	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	866
BsrGI	TGTACA	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	520
BssECI	CCNNGG	4 cut(s)	202, 208, 348, 378
BssMI	GATC	3 cut(s)	10, 535, 891
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	2 cut(s)	208, 378
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	7 cut(s)	243, 266, 361, 529, 769, 810, 853
Bst6I	CTCTTC	2 cut(s)	498, 714
BstACI	GRCGYC	1 cut(s)	42
BstAPI	GCANNNNNTGC	2 cut(s)	344, 785
BstAUI	TGTACA	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	921
BstDEI	CTNAG	5 cut(s)	123, 557, 569, 857, 926
BstF5I	GGATG	1 cut(s)	389
BstH2I	RGCGCY	2 cut(s)	45, 969
BstHHI	GCGC	3 cut(s)	44, 838, 968
BstKTI	GATC	3 cut(s)	13, 538, 894
BstMAI	GTCTC	2 cut(s)	485, 646
BstMBI	GATC	3 cut(s)	10, 535, 891
BstMWI	GCNNNNNNNGC	6 cut(s)	50, 344, 350, 611, 620, 785
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	2 cut(s)	201, 347
BstSFI	CTRYAG	1 cut(s)	705
BstV1I	GCAGC	6 cut(s)	328, 331, 350, 577, 691, 738
BstV2I	GAAGAC	1 cut(s)	446
BstXI	CCANNNNNNTGG	1 cut(s)	209
BsuI	GTATCC	2 cut(s)	254, 376
BsuRI	GGCC	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	389
BveI	ACCTGC	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	921
CaiI	CAGNNNCTG	2 cut(s)	344, 844
CciI	TCATGA	1 cut(s)	693
CfoI	GCGC	3 cut(s)	44, 838, 968
Cfr13I	GGNCC	3 cut(s)	205, 806, 910
CseI	GACGC	2 cut(s)	451, 645
Csp6I	GTAC	5 cut(s)	76, 103, 357, 523, 585
CviAII	CATG	3 cut(s)	310, 694, 906
CviQI	GTAC	5 cut(s)	76, 103, 357, 523, 585
DdeI	CTNAG	5 cut(s)	123, 557, 569, 857, 926
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	3 cut(s)	12, 537, 893
DpnII	GATC	3 cut(s)	10, 535, 891
Eam1104I	CTCTTC	2 cut(s)	498, 714
EarI	CTCTTC	2 cut(s)	498, 714
Ecl136II	GAGCTC	4 cut(s)	53, 122, 737, 861
Eco130I	CCWWGG	2 cut(s)	208, 378
Eco24I	GRGCYC	4 cut(s)	55, 124, 739, 863
Eco31I	GGTCTC	1 cut(s)	485
Eco47I	GGWCC	2 cut(s)	806, 910
Eco47III	AGCGCT	1 cut(s)	967
Eco53kI	GAGCTC	4 cut(s)	53, 122, 737, 861
Eco57I	CTGAAG	2 cut(s)	21, 132
EcoICRI	GAGCTC	4 cut(s)	53, 122, 737, 861
EcoO109I	RGGNCCY	2 cut(s)	205, 910
EcoRII	CCWGG	1 cut(s)	201
EcoT14I	CCWWGG	2 cut(s)	208, 378
EcoT38I	GRGCYC	4 cut(s)	55, 124, 739, 863
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
ErhI	CCWWGG	2 cut(s)	208, 378
Esp3I	CGTCTC	1 cut(s)	646
FaeI	CATG	3 cut(s)	313, 697, 909
FaqI	GGGAC	3 cut(s)	226, 742, 819
FatI	CATG	3 cut(s)	309, 693, 905
FbaI	TGATCA	1 cut(s)	535
Fnu4HI	GCNGC	6 cut(s)	339, 342, 345, 566, 705, 727
FokI	GGATG	1 cut(s)	376
FriOI	GRGCYC	4 cut(s)	55, 124, 739, 863
Fsp4HI	GCNGC	6 cut(s)	339, 342, 345, 566, 705, 727
GlaI	GCGC	3 cut(s)	43, 837, 967
GluI	GCNGC	6 cut(s)	339, 342, 345, 566, 705, 727
GsaI	CCCAGC	1 cut(s)	677
GsuI	CTGGAG	1 cut(s)	582
HaeII	RGCGCY	2 cut(s)	45, 969
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	1 cut(s)	348
HgaI	GACGC	2 cut(s)	451, 645
HhaI	GCGC	3 cut(s)	44, 838, 968
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	313, 697, 909
Hin6I	GCGC	3 cut(s)	42, 836, 966
HinP1I	GCGC	3 cut(s)	42, 836, 966
HinfI	GANTC	5 cut(s)	17, 432, 590, 697, 746
HpaII	CCGG	1 cut(s)	348
Hpy166II	GTNNAC	2 cut(s)	525, 946
Hpy188I	TCNGA	4 cut(s)	119, 154, 451, 558
Hpy188III	TCNNGA	5 cut(s)	14, 83, 436, 599, 694
Hpy8I	GTNNAC	2 cut(s)	525, 946
HpyCH4III	ACNGT	7 cut(s)	243, 266, 361, 529, 769, 810, 853
HpyCH4V	TGCA	8 cut(s)	26, 93, 338, 389, 403, 687, 707, 779
HpyF10VI	GCNNNNNNNGC	6 cut(s)	50, 344, 350, 611, 620, 785
HpyF3I	CTNAG	5 cut(s)	123, 557, 569, 857, 926
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	313, 697, 909
HspAI	GCGC	3 cut(s)	42, 836, 966
KasI	GGCGCC	1 cut(s)	41
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	3 cut(s)	10, 535, 891
LmnI	GCTCC	2 cut(s)	50, 734
Lsp1109I	GCAGC	6 cut(s)	328, 331, 350, 577, 691, 738
LweI	GCATC	3 cut(s)	136, 390, 398
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	3 cut(s)	12, 537, 893
MboI	GATC	3 cut(s)	10, 535, 891
MboII	GAAGA	6 cut(s)	451, 485, 722, 725, 731, 811
MhlI	GDGCHC	4 cut(s)	55, 124, 739, 863
MluCI	AATT	1 cut(s)	171
Mly113I	GGCGCC	1 cut(s)	42
MlyI	GAGTC	2 cut(s)	426, 599
MseI	TTAA	2 cut(s)	273, 959
MspA1I	CMGCKG	3 cut(s)	341, 541, 568
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	2 cut(s)	203, 349
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	6 cut(s)	50, 344, 350, 611, 620, 785
NarI	GGCGCC	1 cut(s)	42
NciI	CCSGG	1 cut(s)	349
NdeII	GATC	3 cut(s)	10, 535, 891
NlaIII	CATG	3 cut(s)	313, 697, 909
NlaIV	GGNNCC	4 cut(s)	43, 637, 807, 911
NmeAIII	GCCGAG	2 cut(s)	462, 842
PagI	TCATGA	1 cut(s)	693
PaqCI	CACCTGC	1 cut(s)	98
PfeI	GAWTC	3 cut(s)	17, 697, 746
PkrI	GCNGC	6 cut(s)	340, 343, 346, 567, 706, 728
PleI	GAGTC	2 cut(s)	426, 598
PluTI	GGCGCC	1 cut(s)	45
PpsI	GAGTC	2 cut(s)	426, 598
PpuMI	RGGWCCY	1 cut(s)	910
Psp124BI	GAGCTC	4 cut(s)	55, 124, 739, 863
Psp5II	RGGWCCY	1 cut(s)	910
Psp6I	CCWGG	1 cut(s)	201
PspFI	CCCAGC	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	4 cut(s)	43, 637, 807, 911
PspPI	GGNCC	3 cut(s)	205, 806, 910
PspPPI	RGGWCCY	1 cut(s)	910
PstI	CTGCAG	1 cut(s)	709
PstNI	CAGNNNCTG	2 cut(s)	344, 844
PvuII	CAGCTG	3 cut(s)	341, 541, 568
RsaI	GTAC	5 cut(s)	77, 104, 358, 524, 586
RsaNI	GTAC	5 cut(s)	76, 103, 357, 523, 585
SacI	GAGCTC	4 cut(s)	55, 124, 739, 863
SaqAI	TTAA	2 cut(s)	273, 959
SatI	GCNGC	6 cut(s)	339, 342, 345, 566, 705, 727
Sau3AI	GATC	3 cut(s)	10, 535, 891
Sau96I	GGNCC	3 cut(s)	205, 806, 910
SchI	GAGTC	2 cut(s)	426, 599
ScrFI	CCNGG	2 cut(s)	203, 349
SduI	GDGCHC	4 cut(s)	55, 124, 739, 863
SfaNI	GCATC	3 cut(s)	136, 390, 398
SfcI	CTRYAG	1 cut(s)	705
SfoI	GGCGCC	1 cut(s)	43
SinI	GGWCC	2 cut(s)	806, 910
Sse9I	AATT	1 cut(s)	171
SsiI	CCGC	1 cut(s)	621
SspDI	GGCGCC	1 cut(s)	41
SstI	GAGCTC	4 cut(s)	55, 124, 739, 863
StyD4I	CCNGG	2 cut(s)	201, 347
StyI	CCWWGG	2 cut(s)	208, 378
TaaI	ACNGT	7 cut(s)	243, 266, 361, 529, 769, 810, 853
TaqI	TCGA	1 cut(s)	84
TasI	AATT	1 cut(s)	171
TatI	WGTACW	2 cut(s)	356, 522
TfiI	GAWTC	3 cut(s)	17, 697, 746
Tru1I	TTAA	2 cut(s)	273, 959
Tru9I	TTAA	2 cut(s)	273, 959
TseI	GCWGC	6 cut(s)	338, 341, 344, 565, 704, 726
TspDTI	ATGAA	2 cut(s)	235, 732
TspGWI	ACGGA	1 cut(s)	747
VpaK11BI	GGWCC	2 cut(s)	806, 910
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.