Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002958

Physical Location & Seq

Genomic Coordinates Forward (+)

50340962 .. 50343900

Gene Structure 2939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG210200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGGGTTTGATCTTGAATCTGTTGCAGAGGCAACCTCAGGGGCCATTGGAGCTCTGGTCAGCACCACCATCTTGTACCCACTTGATACCTGCAAGACCAAATACCAAGCTGAAGTCCGAGCTCAGAATCAGCAAAAGTACAGGAACATTTCTGATGTTTTCTGGGAAGCAATTTCTACCCGTCAGGTGCTTTCATTATACCAGGGCCTTGGGACAAAGAACCTGCAGTCCTTTATTTCACAATTCATCTACTTCTATGGATACAGTTTTTTTAAAAGGTTGTACTTGGAGAAAAGTGGAAACAAAATCATGGGTACAAAAGCAAACTTGATAGTTGCAGCAGCTGCTGGAGCTTGTACAGTCATAGTGACAATGCCATTGGATACAGCATCATCAAGGATGCAAACAAGTGAGTTTGGGAAATCTAAAGGACTCTGGAAGACCCTGTCAGAGGGAACTTGGATTGAGGCATTTGATGGTCTTGGCATATCACTTCTTTTGACTTCTAACCCATCGATCCAGTATACGGTATTTGATCAGCTGAAGCAAAAGCTATTGATTGCGCAACTGAGCAAAAGAACTGGTACAGAGTCATCTCCAGTAGCTCTTTCTGCTTTTTCTGCTTTCGCTTTGGGTGCGGTCTCAAAGTGTATCGCATCTTGCTTGACATACCCAGCCATCAGGTGCAAGGTGATGATTCAAGCTGCAGATGAAGATGAAGAAGAAGGTAGCAATGAAGTTCAAGAAAGGTCTCCAAAAACCAAAAAGACAGTTTCAGATGCATTTTATGCCATTTGGAGAAGGGAGGGGCCACTGGGTTTCTTCAAAGGATTACAGGCTCAGATACTAAAAACTGTTCTAAGCTCGGCATTGCTATTGATGATCAAGGAGAAGATCACAAAAACCACCTGGGTCCTATTGATTGCACTAAAGAAATTTCTCTTTCTCAAGCAAAGCCGATTAAAGAGCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

324

Amino Acids

35.79

Weight (kDa)

9.43

Isoelectric Point (pI)

39.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	6 - 98	3.2e-16	Mitochondrial carrier protein
Mito_carr	PF00153	108 - 185	1.7e-06	Mitochondrial carrier protein
Mito_carr	PF00153	203 - 301	3.4e-15	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05290 AT5G27520
fragaria_vesca	FvH4_4g14900 FvH4_6g05760
malus_domestica	MD04G1205900.v1.1 MD12G1220000.v1.1 MD13G1186400.v1.1 MD16G1187100.v1.1
prunus_persica	Prupe.1G154100_v2.0.a1 Prupe.1G154100_v2.0.a1 Prupe.6G326700_v2.0.a1
pyrus_communis	pycom04g18220 pycom12g20540 pycom13g16130 pycom16g15710
rosa_chinensis	RchiOBHm_Chr3g0454671 RchiOBHm_Chr4g0417191 RchiOBHm_Chr4g0417301
rosa_laevigata	RLG00000007919 RLG00000025425
rosa_multiflora	Rmu_sc0000646.1_g000002 Rmu_sc0002129.1_g000048
rosa_roxburghii	Rroxscaffold_5G00361050 Rroxscaffold_6G00424870
rosa_rugosa	Rorug03G0001100.1 Rorug04G0146200 Rorug04G0146600
rosa_samantha	Rh3AG061000 Rh3CG061700 Rh3DG062600 Rh4AG209400 Rh4AG210200 Rh4CG220600 Rh4CG221200 Rh4DG207200 Rh4DG208200
rosa_wichuraiana	Rw3G004750 Rw4G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	564
Acc36I	ACCTGC	2 cut(s)	98, 231
AccI	GTMKAC	1 cut(s)	524
AciI	CCGC	1 cut(s)	638
AclWI	GGATC	1 cut(s)	511
AcsI	RAATTY	1 cut(s)	935
AcuI	CTGAAG	2 cut(s)	132, 563
AfaI	GTAC	6 cut(s)	77, 140, 284, 316, 358, 586
AfeI	AGCGCT	1 cut(s)	970
AfiI	CCNNNNNNNGG	2 cut(s)	451, 526
AgsI	TTSAA	4 cut(s)	17, 701, 743, 826
AjnI	CCWGG	2 cut(s)	201, 908
AloI	GAACNNNNNNTCC	2 cut(s)	212, 244
Alw21I	GWGCWC	2 cut(s)	55, 124
Alw26I	GTCTC	2 cut(s)	646, 756
AlwI	GGATC	1 cut(s)	511
AlwNI	CAGNNNCTG	2 cut(s)	344, 347
Aor51HI	AGCGCT	1 cut(s)	970
AoxI	GGCC	3 cut(s)	42, 205, 809
ApeKI	GCWGC	4 cut(s)	338, 341, 344, 704
ApoI	RAATTY	1 cut(s)	935
AspLEI	GCGC	2 cut(s)	565, 971
AspS9I	GGNCC	4 cut(s)	42, 205, 809, 913
AsuHPI	GGTGA	1 cut(s)	703
AvaII	GGWCC	1 cut(s)	913
AxyI	CCTNAGG	1 cut(s)	37
BanII	GRGCYC	2 cut(s)	55, 124
BbsI	GAAGAC	1 cut(s)	446
Bbv12I	GWGCWC	2 cut(s)	55, 124
BbvI	GCAGC	4 cut(s)	331, 350, 353, 691
BccI	CCATC	4 cut(s)	77, 470, 520, 686
BciT130I	CCWGG	2 cut(s)	203, 910
BciVI	GTATCC	2 cut(s)	254, 376
BclI	TGATCA	2 cut(s)	535, 882
BcoDI	GTCTC	2 cut(s)	646, 756
BfmI	CTRYAG	2 cut(s)	224, 705
BfoI	RGCGCY	1 cut(s)	972
BfuAI	ACCTGC	2 cut(s)	98, 231
BfuI	GTATCC	2 cut(s)	254, 376
BisI	GCNGC	4 cut(s)	339, 342, 345, 705
BlsI	GCNGC	4 cut(s)	340, 343, 346, 706
Bme1390I	CCNGG	2 cut(s)	203, 910
Bme18I	GGWCC	1 cut(s)	913
BmgT120I	GGNCC	4 cut(s)	42, 205, 809, 913
BmiI	GGNNCC	3 cut(s)	43, 810, 914
BmrFI	CCNGG	2 cut(s)	203, 910
BmrI	ACTGGG	1 cut(s)	824
BmsI	GCATC	4 cut(s)	390, 398, 665, 769
BmuI	ACTGGG	1 cut(s)	824
BpiI	GAAGAC	1 cut(s)	446
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	2 cut(s)	369, 582
BpuEI	CTTGAG	1 cut(s)	932
Bsa29I	ATCGAT	1 cut(s)	515
BsaI	GGTCTC	2 cut(s)	646, 756
BsaJI	CCNNGG	3 cut(s)	202, 208, 909
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	2 cut(s)	451, 526
Bse1I	ACTGG	4 cut(s)	520, 586, 599, 819
Bse21I	CCTNAGG	1 cut(s)	37
Bse3DI	GCAATG	2 cut(s)	739, 869
BseBI	CCWGG	2 cut(s)	203, 910
BseCI	ATCGAT	1 cut(s)	515
BseDI	CCNNGG	3 cut(s)	202, 208, 909
BseGI	GGATG	1 cut(s)	405
BseLI	CCNNNNNNNGG	2 cut(s)	451, 526
BseMI	GCAATG	2 cut(s)	739, 869
BseMII	CTCAG	4 cut(s)	51, 137, 560, 854
BseNI	ACTGG	4 cut(s)	520, 586, 599, 819
BseXI	GCAGC	4 cut(s)	331, 350, 353, 691
BseYI	CCCAGC	1 cut(s)	673
BshFI	GGCC	3 cut(s)	44, 207, 811
BshVI	ATCGAT	1 cut(s)	515
BsiHKAI	GWGCWC	2 cut(s)	55, 124
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	2 cut(s)	451, 526
BsmAI	GTCTC	2 cut(s)	646, 756
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	3 cut(s)	44, 207, 811
Bso31I	GGTCTC	2 cut(s)	646, 756
Bsp1286I	GDGCHC	2 cut(s)	55, 124
Bsp1407I	TGTACA	1 cut(s)	356
Bsp143I	GATC	5 cut(s)	10, 516, 535, 882, 894
BspACI	CCGC	1 cut(s)	638
BspANI	GGCC	3 cut(s)	44, 207, 811
BspCNI	CTCAG	4 cut(s)	50, 136, 561, 853
BspDI	ATCGAT	1 cut(s)	515
BspLI	GGNNCC	3 cut(s)	43, 810, 914
BspMAI	CTGCAG	2 cut(s)	228, 709
BspMI	ACCTGC	2 cut(s)	98, 231
BspPI	GGATC	1 cut(s)	511
BspTNI	GGTCTC	2 cut(s)	646, 756
BsrDI	GCAATG	2 cut(s)	739, 869
BsrGI	TGTACA	1 cut(s)	356
BsrI	ACTGG	4 cut(s)	520, 586, 599, 819
BssECI	CCNNGG	3 cut(s)	202, 208, 909
BssMI	GATC	5 cut(s)	10, 516, 535, 882, 894
BssNAI	GTATAC	1 cut(s)	525
BssT1I	CCWWGG	1 cut(s)	208
Bst1107I	GTATAC	1 cut(s)	525
Bst2UI	CCWGG	2 cut(s)	203, 910
Bst4CI	ACNGT	5 cut(s)	266, 361, 529, 772, 856
BstAPI	GCANNNNNTGC	2 cut(s)	344, 788
BstAUI	TGTACA	1 cut(s)	356
BstDEI	CTNAG	5 cut(s)	37, 123, 569, 840, 860
BstENI	CCTNNNNNAGG	1 cut(s)	449
BstF5I	GGATG	1 cut(s)	405
BstH2I	RGCGCY	1 cut(s)	972
BstHHI	GCGC	2 cut(s)	565, 971
BstKTI	GATC	5 cut(s)	13, 519, 538, 885, 897
BstMAI	GTCTC	2 cut(s)	646, 756
BstMBI	GATC	5 cut(s)	10, 516, 535, 882, 894
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 344, 350, 611, 620, 635, 788
BstNI	CCWGG	2 cut(s)	203, 910
BstSCI	CCNGG	2 cut(s)	201, 908
BstSFI	CTRYAG	2 cut(s)	224, 705
BstV1I	GCAGC	4 cut(s)	331, 350, 353, 691
BstV2I	GAAGAC	1 cut(s)	446
BstXI	CCANNNNNNTGG	1 cut(s)	209
BstZ17I	GTATAC	1 cut(s)	525
Bsu15I	ATCGAT	1 cut(s)	515
Bsu36I	CCTNAGG	1 cut(s)	37
BsuI	GTATCC	2 cut(s)	254, 376
BsuRI	GGCC	3 cut(s)	44, 207, 811
BsuTUI	ATCGAT	1 cut(s)	515
BtsCI	GGATG	1 cut(s)	405
BtsIMutI	CAGTG	1 cut(s)	812
BveI	ACCTGC	2 cut(s)	98, 231
CaiI	CAGNNNCTG	2 cut(s)	344, 347
CfoI	GCGC	2 cut(s)	565, 971
Cfr13I	GGNCC	4 cut(s)	42, 205, 809, 913
ClaI	ATCGAT	1 cut(s)	515
Csp6I	GTAC	6 cut(s)	76, 139, 283, 315, 357, 585
CviAII	CATG	1 cut(s)	310
CviQI	GTAC	6 cut(s)	76, 139, 283, 315, 357, 585
DdeI	CTNAG	5 cut(s)	37, 123, 569, 840, 860
DpnI	GATC	5 cut(s)	12, 518, 537, 884, 896
DpnII	GATC	5 cut(s)	10, 516, 535, 882, 894
DraI	TTTAAA	1 cut(s)	274
Ecl136II	GAGCTC	2 cut(s)	53, 122
Eco130I	CCWWGG	1 cut(s)	208
Eco24I	GRGCYC	2 cut(s)	55, 124
Eco31I	GGTCTC	2 cut(s)	646, 756
Eco47I	GGWCC	1 cut(s)	913
Eco47III	AGCGCT	1 cut(s)	970
Eco53kI	GAGCTC	2 cut(s)	53, 122
Eco57I	CTGAAG	2 cut(s)	132, 563
Eco81I	CCTNAGG	1 cut(s)	37
EcoICRI	GAGCTC	2 cut(s)	53, 122
EcoNI	CCTNNNNNAGG	1 cut(s)	449
EcoO109I	RGGNCCY	2 cut(s)	205, 913
EcoRII	CCWGG	2 cut(s)	201, 908
EcoT14I	CCWWGG	1 cut(s)	208
EcoT22I	ATGCAT	1 cut(s)	784
EcoT38I	GRGCYC	2 cut(s)	55, 124
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	1 cut(s)	313
FaiI	YATR	8 cut(s)	199, 258, 311, 365, 488, 525, 670, 789
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	1 cut(s)	309
FbaI	TGATCA	2 cut(s)	535, 882
FblI	GTMKAC	1 cut(s)	524
Fnu4HI	GCNGC	4 cut(s)	339, 342, 345, 705
FokI	GGATG	1 cut(s)	412
FriOI	GRGCYC	2 cut(s)	55, 124
Fsp4HI	GCNGC	4 cut(s)	339, 342, 345, 705
FspI	TGCGCA	1 cut(s)	564
GlaI	GCGC	2 cut(s)	564, 970
GluI	GCNGC	4 cut(s)	339, 342, 345, 705
GsaI	CCCAGC	1 cut(s)	677
GsuI	CTGGAG	2 cut(s)	369, 582
HaeII	RGCGCY	1 cut(s)	972
HaeIII	GGCC	3 cut(s)	44, 207, 811
HhaI	GCGC	2 cut(s)	565, 971
Hin1II	CATG	1 cut(s)	313
Hin6I	GCGC	2 cut(s)	563, 969
HinP1I	GCGC	2 cut(s)	563, 969
HinfI	GANTC	5 cut(s)	17, 127, 432, 590, 697
HphI	GGTGA	1 cut(s)	703
Hpy166II	GTNNAC	1 cut(s)	525
Hpy188I	TCNGA	6 cut(s)	119, 126, 154, 451, 778, 843
Hpy188III	TCNNGA	3 cut(s)	14, 436, 743
Hpy8I	GTNNAC	1 cut(s)	525
HpyAV	CCTTC	2 cut(s)	719, 795
HpyCH4III	ACNGT	5 cut(s)	266, 361, 529, 772, 856
HpyCH4V	TGCA	9 cut(s)	26, 93, 226, 338, 403, 687, 707, 782, 926
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 344, 350, 611, 620, 635, 788
HpyF3I	CTNAG	5 cut(s)	37, 123, 569, 840, 860
Hsp92II	CATG	1 cut(s)	313
HspAI	GCGC	2 cut(s)	563, 969
Ksp22I	TGATCA	2 cut(s)	535, 882
Kzo9I	GATC	5 cut(s)	10, 516, 535, 882, 894
LmnI	GCTCC	2 cut(s)	50, 350
Lsp1109I	GCAGC	4 cut(s)	331, 350, 353, 691
LweI	GCATC	4 cut(s)	390, 398, 665, 769
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	5 cut(s)	12, 518, 537, 884, 896
MboI	GATC	5 cut(s)	10, 516, 535, 882, 894
MboII	GAAGA	6 cut(s)	451, 725, 731, 734, 814, 904
MhlI	GDGCHC	2 cut(s)	55, 124
MluCI	AATT	3 cut(s)	171, 242, 935
MlyI	GAGTC	2 cut(s)	426, 599
MnlI	CCTC	5 cut(s)	22, 46, 445, 460, 799
Mph1103I	ATGCAT	1 cut(s)	784
MseI	TTAA	2 cut(s)	273, 962
MspA1I	CMGCKG	2 cut(s)	344, 541
MspR9I	CCNGG	2 cut(s)	203, 910
MvaI	CCWGG	2 cut(s)	203, 910
MwoI	GCNNNNNNNGC	7 cut(s)	50, 344, 350, 611, 620, 635, 788
NdeII	GATC	5 cut(s)	10, 516, 535, 882, 894
NlaIII	CATG	1 cut(s)	313
NlaIV	GGNNCC	3 cut(s)	43, 810, 914
NmeAIII	GCCGAG	1 cut(s)	845
NmuCI	GTSAC	1 cut(s)	367
NsbI	TGCGCA	1 cut(s)	564
NsiI	ATGCAT	1 cut(s)	784
PfeI	GAWTC	3 cut(s)	17, 127, 697
PflFI	GACNNNGTC	1 cut(s)	445
PkrI	GCNGC	4 cut(s)	340, 343, 346, 706
PleI	GAGTC	2 cut(s)	426, 598
PpsI	GAGTC	2 cut(s)	426, 598
PpuMI	RGGWCCY	1 cut(s)	913
Psp124BI	GAGCTC	2 cut(s)	55, 124
Psp5II	RGGWCCY	1 cut(s)	913
Psp6I	CCWGG	2 cut(s)	201, 908
PspFI	CCCAGC	1 cut(s)	673
PspGI	CCWGG	2 cut(s)	201, 908
PspN4I	GGNNCC	3 cut(s)	43, 810, 914
PspPI	GGNCC	4 cut(s)	42, 205, 809, 913
PspPPI	RGGWCCY	1 cut(s)	913
PstI	CTGCAG	2 cut(s)	228, 709
PstNI	CAGNNNCTG	2 cut(s)	344, 347
PsyI	GACNNNGTC	1 cut(s)	445
PvuII	CAGCTG	2 cut(s)	344, 541
RsaI	GTAC	6 cut(s)	77, 140, 284, 316, 358, 586
RsaNI	GTAC	6 cut(s)	76, 139, 283, 315, 357, 585
SacI	GAGCTC	2 cut(s)	55, 124
SaqAI	TTAA	2 cut(s)	273, 962
SatI	GCNGC	4 cut(s)	339, 342, 345, 705
Sau3AI	GATC	5 cut(s)	10, 516, 535, 882, 894
Sau96I	GGNCC	4 cut(s)	42, 205, 809, 913
SchI	GAGTC	2 cut(s)	426, 599
ScrFI	CCNGG	2 cut(s)	203, 910
SduI	GDGCHC	2 cut(s)	55, 124
SfaNI	GCATC	4 cut(s)	390, 398, 665, 769
SfcI	CTRYAG	2 cut(s)	224, 705
SinI	GGWCC	1 cut(s)	913
SmlI	CTYRAG	1 cut(s)	947
SmoI	CTYRAG	1 cut(s)	947
Sse9I	AATT	3 cut(s)	171, 242, 935
SsiI	CCGC	1 cut(s)	638
SstI	GAGCTC	2 cut(s)	55, 124
StyD4I	CCNGG	2 cut(s)	201, 908
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	5 cut(s)	266, 361, 529, 772, 856
TaqI	TCGA	1 cut(s)	515
TasI	AATT	3 cut(s)	171, 242, 935
TatI	WGTACW	3 cut(s)	138, 282, 356
TfiI	GAWTC	3 cut(s)	17, 127, 697
Tru1I	TTAA	2 cut(s)	273, 962
Tru9I	TTAA	2 cut(s)	273, 962
TscAI	CASTG	1 cut(s)	819
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	4 cut(s)	338, 341, 344, 704
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	5 cut(s)	183, 235, 726, 732, 750
TspRI	CASTG	1 cut(s)	819
Tth111I	GACNNNGTC	1 cut(s)	445
VpaK11BI	GGWCC	1 cut(s)	913
XagI	CCTNNNNNAGG	1 cut(s)	449
XapI	RAATTY	1 cut(s)	935
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	524
Zsp2I	ATGCAT	1 cut(s)	784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.