Rh4BG031000

traB domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0021664
Physical Location & Seq
Forward (+)
5585020 .. 5588395
3376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG031000.1

Sequence Viewer

Length: 300 bp
ATGGACCGGGAATCATCGACCCTGCCCGACCCGAATTCGGCCGAGGATTCCCTGTCGGATAGCTTGTCTGATAGCATCGTCAATGTGGAGGTGCCTAGAGAGGAGGAGGAGGAGGACGGCGACGTCGTTTCGACCAGCGCTGCAGCGGCGGAGGAGGAGGATCTGTCCCCGAGCTTGGTGGTGCTGACGTGTGAGTCCTCCGCCGAGAGCGGCGTTTGTGACGTCCACCTCGTCGGAACGGCGCATGTTTCGGTGTGTGGTTTTCAGGAAGCGGGGGAATTAGAGGTTGTGGATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TraB

Protein Analysis

99

Amino Acids

10.32

Weight (kDa)

4.05

Isoelectric Point (pI)

57.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021664)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004112.1_g000019
rosa_rugosa Rorug04G0146200
rosa_samantha Rh4AG081500 Rh4BG031000 Rh4CG089000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 122, 193
AatII GACGTC 2 cut(s) 126, 225
AccB1I GGYRCC 1 cut(s) 91
AccBSI CCGCTC 1 cut(s) 210
AciI CCGC 5 cut(s) 146, 149, 201, 210, 272
AclWI GGATC 1 cut(s) 168
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 1 cut(s) 34
AcyI GRCGYC 2 cut(s) 123, 222
AfeI AGCGCT 1 cut(s) 139
AfiI CCNNNNNNNGG 2 cut(s) 37, 175
AflIII ACRYGT 1 cut(s) 188
AjiI CACGTC 1 cut(s) 189
AluBI AGCT 2 cut(s) 63, 174
AluI AGCT 2 cut(s) 63, 174
AlwI GGATC 1 cut(s) 168
Ama87I CYCGRG 1 cut(s) 169
Aor51HI AGCGCT 1 cut(s) 139
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 2 cut(s) 140, 143
ApoI RAATTY 1 cut(s) 34
AspLEI GCGC 2 cut(s) 140, 244
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 8
AvaI CYCGRG 1 cut(s) 169
AvaII GGWCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 91
BbvI GCAGC 2 cut(s) 127, 155
BceAI ACGGC 2 cut(s) 133, 255
BcnI CCSGG 1 cut(s) 8
BfaI CTAG 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 141
BfoI RGCGCY 1 cut(s) 141
BisI GCNGC 4 cut(s) 141, 144, 147, 211
BlsI GCNGC 4 cut(s) 142, 145, 148, 212
Bme1390I CCNGG 1 cut(s) 8
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 169
BmgBI CACGTC 1 cut(s) 189
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 1 cut(s) 8
BmsI GCATC 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 8
BsaHI GRCGYC 2 cut(s) 123, 222
BsaJI CCNNGG 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 175
BseDI CCNNGG 1 cut(s) 42
BseLI CCNNNNNNNGG 2 cut(s) 37, 175
BseRI GAGGAG 6 cut(s) 116, 119, 122, 125, 167, 170
BseX3I CGGCCG 1 cut(s) 39
BseXI GCAGC 2 cut(s) 127, 155
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 1 cut(s) 41
BshNI GGYRCC 1 cut(s) 91
BsiEI CGRYCG 1 cut(s) 42
BsiHKCI CYCGRG 1 cut(s) 169
BsiSI CCGG 1 cut(s) 7
BslFI GGGAC 1 cut(s) 151
BslI CCNNNNNNNGG 2 cut(s) 37, 175
BsmFI GGGAC 1 cut(s) 151
BsnI GGCC 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 169
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 5 cut(s) 146, 149, 201, 210, 272
BspANI GGCC 1 cut(s) 41
BspLI GGNNCC 1 cut(s) 93
BspMAI CTGCAG 1 cut(s) 145
BspPI GGATC 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 91
BsrBI CCGCTC 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 1 cut(s) 160
BssNI GRCGYC 2 cut(s) 123, 222
BstACI GRCGYC 2 cut(s) 123, 222
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 2 cut(s) 140, 244
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstNSI RCATGY 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 6
BstSFI CTRYAG 1 cut(s) 141
BstV1I GCAGC 2 cut(s) 127, 155
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BstZI CGGCCG 1 cut(s) 39
BsuRI GGCC 1 cut(s) 41
BtrI CACGTC 1 cut(s) 189
CfoI GCGC 2 cut(s) 140, 244
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 1 cut(s) 245
CviJI RGCY 3 cut(s) 41, 63, 174
CviKI_1 RGCY 3 cut(s) 41, 63, 174
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
DrdI GACNNNNNNGTC 2 cut(s) 122, 193
DseDI GACNNNNNNGTC 2 cut(s) 122, 193
EaeI YGGCCR 1 cut(s) 39
EagI CGGCCG 1 cut(s) 39
EciI GGCGGA 2 cut(s) 164, 190
EclXI CGGCCG 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 4
Eco47III AGCGCT 1 cut(s) 139
Eco52I CGGCCG 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 169
EcoRI GAATTC 1 cut(s) 34
FaeI CATG 1 cut(s) 248
FaiI YATR 1 cut(s) 246
FaqI GGGAC 1 cut(s) 151
FatI CATG 1 cut(s) 244
FauI CCCGC 1 cut(s) 265
Fnu4HI GCNGC 4 cut(s) 141, 144, 147, 211
Fsp4HI GCNGC 4 cut(s) 141, 144, 147, 211
FspBI CTAG 1 cut(s) 96
GlaI GCGC 2 cut(s) 139, 243
GluI GCNGC 4 cut(s) 141, 144, 147, 211
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 1 cut(s) 41
HapII CCGG 1 cut(s) 7
HhaI GCGC 2 cut(s) 140, 244
Hin1I GRCGYC 2 cut(s) 123, 222
Hin1II CATG 1 cut(s) 248
Hin6I GCGC 2 cut(s) 138, 242
HinP1I GCGC 2 cut(s) 138, 242
HinfI GANTC 3 cut(s) 11, 47, 194
HpaII CCGG 1 cut(s) 7
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 3 cut(s) 58, 70, 236
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 1 cut(s) 226
Hpy99I CGWCG 3 cut(s) 125, 128, 236
HpyCH4IV ACGT 3 cut(s) 123, 188, 222
HpyCH4V TGCA 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpySE526I ACGT 3 cut(s) 123, 188, 222
Hsp92I GRCGYC 2 cut(s) 123, 222
Hsp92II CATG 1 cut(s) 248
HspAI GCGC 2 cut(s) 138, 242
Kzo9I GATC 1 cut(s) 160
LpnPI CCDG 5 cut(s) 20, 35, 65, 148, 251
Lsp1109I GCAGC 2 cut(s) 127, 155
LweI GCATC 1 cut(s) 84
MaeI CTAG 1 cut(s) 96
MaeII ACGT 3 cut(s) 123, 188, 222
MaeIII GTNAC 1 cut(s) 218
MalI GATC 1 cut(s) 162
MbiI CCGCTC 1 cut(s) 210
MboI GATC 1 cut(s) 160
MflI RGATCY 1 cut(s) 160
MluCI AATT 2 cut(s) 34, 278
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 2 cut(s) 36, 214
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 1 cut(s) 8
MwoI GCNNNNNNNGC 1 cut(s) 146
NciI CCSGG 1 cut(s) 8
NdeII GATC 1 cut(s) 160
NlaIII CATG 1 cut(s) 248
NlaIV GGNNCC 1 cut(s) 93
NmeAIII GCCGAG 2 cut(s) 67, 229
NmuCI GTSAC 1 cut(s) 218
NspI RCATGY 1 cut(s) 248
PcsI WCGNNNNNNNCGW 2 cut(s) 123, 228
PfeI GAWTC 2 cut(s) 11, 47
PkrI GCNGC 4 cut(s) 142, 145, 148, 212
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 145
PsuI RGATCY 1 cut(s) 160
SatI GCNGC 4 cut(s) 141, 144, 147, 211
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 8
SetI ASST 8 cut(s) 65, 93, 126, 176, 191, 225, 231, 288
SfaNI GCATC 1 cut(s) 84
SfcI CTRYAG 1 cut(s) 141
SinI GGWCC 1 cut(s) 4
Sse9I AATT 2 cut(s) 34, 278
SsiI CCGC 5 cut(s) 146, 149, 201, 210, 272
SspMI CTAG 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 6
TaiI ACGT 3 cut(s) 126, 191, 225
TaqI TCGA 2 cut(s) 17, 131
TasI AATT 2 cut(s) 34, 278
TauI GCSGC 2 cut(s) 149, 213
TfiI GAWTC 2 cut(s) 11, 47
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 2 cut(s) 140, 143
Tsp45I GTSAC 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 34
XceI RCATGY 1 cut(s) 248
XspI CTAG 1 cut(s) 96
ZraI GACGTC 2 cut(s) 124, 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.