Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004126.1

Orthogroup ID

OG0021665

Physical Location & Seq

Genomic Coordinates Forward (+)

44806 .. 45114

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004126.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atgtacagcttcgggactgtattgttggagatcatatgctgtcagagaggttcgaccatggacatacctgaggatctattaactcttgagaattggatgtaccattgtttggaggccaatgaactggataaggtagtgaaggatgatgatgagattgacacgagtaaactacgggagatggttaagcttggtctttgctgcatccaggaggagccatcattgcgcccttcgatgaagaaggtggtactaatgctggaagggattctggagataccatcacctccaaattatttcagttccagacattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

102

Amino Acids

11.74

Weight (kDa)

4.61

Isoelectric Point (pI)

50.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021665)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004126.1_g000011
rosa_rugosa	Rorug06G0192200
rosa_samantha	Rh6BG216500 Rh6BG217100 Rh6BG308100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	109
AclWI	GGATC	1 cut(s)	81
AfaI	GTAC	3 cut(s)	5, 101, 246
AfiI	CCNNNNNNNGG	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	2 cut(s)	9, 187
AluI	AGCT	2 cut(s)	9, 187
AlwI	GGATC	1 cut(s)	81
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	198
Asp700I	GAANNNNTTC	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	225
AsuHPI	GGTGA	1 cut(s)	270
AxyI	CCTNAGG	1 cut(s)	69
BauI	CACGAG	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	185
BccI	CCATC	3 cut(s)	172, 223, 283
BciT130I	CCWGG	1 cut(s)	206
BisI	GCNGC	1 cut(s)	199
BlsI	GCNGC	1 cut(s)	200
Bme1390I	CCNGG	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	206
BmsI	GCATC	1 cut(s)	210
BpmI	CTGGAG	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	129
Bse21I	CCTNAGG	1 cut(s)	69
Bse3DI	GCAATG	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	3 cut(s)	102, 148, 201
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMI	GCAATG	1 cut(s)	218
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	185
BshFI	GGCC	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	116
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	30, 73
Bsp19I	CCATGG	1 cut(s)	57
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	213
BspPI	GGATC	1 cut(s)	81
BsrDI	GCAATG	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	2 cut(s)	30, 73
BssSI	CACGAG	1 cut(s)	160
BssT1I	CCWWGG	1 cut(s)	57
Bst2BI	CACGAG	1 cut(s)	160
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	1 cut(s)	19
BstAUI	TGTACA	1 cut(s)	3
BstDEI	CTNAG	1 cut(s)	69
BstDSI	CCRYGG	1 cut(s)	57
BstF5I	GGATG	3 cut(s)	102, 148, 201
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	2 cut(s)	33, 76
BstMBI	GATC	2 cut(s)	30, 73
BstMWI	GCNNNNNNNGC	1 cut(s)	220
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	185
BstX2I	RGATCY	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	73
Bsu36I	CCTNAGG	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	116
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	3 cut(s)	102, 148, 201
CfoI	GCGC	1 cut(s)	225
Csp6I	GTAC	3 cut(s)	4, 100, 245
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	4 cut(s)	9, 116, 187, 214
CviKI_1	RGCY	4 cut(s)	9, 116, 187, 214
CviQI	GTAC	3 cut(s)	4, 100, 245
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	2 cut(s)	32, 75
DpnII	GATC	2 cut(s)	30, 73
Eco130I	CCWWGG	1 cut(s)	57
Eco81I	CCTNAGG	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	1 cut(s)	61
FaiI	YATR	4 cut(s)	35, 37, 59, 65
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	1 cut(s)	57
FauNDI	CATATG	1 cut(s)	35
Fnu4HI	GCNGC	1 cut(s)	199
FokI	GGATG	3 cut(s)	109, 155, 188
Fsp4HI	GCNGC	1 cut(s)	199
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	1 cut(s)	199
GsuI	CTGGAG	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	116
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	61
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	1 cut(s)	262
HphI	GGTGA	1 cut(s)	270
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	1 cut(s)	45
Hpy188III	TCNNGA	4 cut(s)	13, 86, 266, 300
Hpy8I	GTNNAC	1 cut(s)	167
HpyAV	CCTTC	4 cut(s)	133, 232, 237, 251
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	1 cut(s)	201
HpyF10VI	GCNNNNNNNGC	1 cut(s)	220
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	61
HspAI	GCGC	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	30, 73
LmnI	GCTCC	1 cut(s)	211
LpnPI	CCDG	6 cut(s)	81, 110, 191, 218, 239, 251
Lsp1109I	GCAGC	1 cut(s)	185
LweI	GCATC	1 cut(s)	210
MalI	GATC	2 cut(s)	32, 75
MboI	GATC	2 cut(s)	30, 73
MboII	GAAGA	1 cut(s)	247
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	2 cut(s)	91, 286
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	5 cut(s)	41, 64, 106, 202, 291
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	2 cut(s)	80, 183
MspR9I	CCNGG	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	1 cut(s)	220
NcoI	CCATGG	1 cut(s)	57
NdeI	CATATG	1 cut(s)	35
NdeII	GATC	2 cut(s)	30, 73
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	262
PflMI	CCANNNNNTGG	1 cut(s)	109
PfoI	TCCNGGA	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	213
PsuI	RGATCY	1 cut(s)	73
RsaI	GTAC	3 cut(s)	5, 101, 246
RsaNI	GTAC	3 cut(s)	4, 100, 245
SaqAI	TTAA	2 cut(s)	80, 183
SatI	GCNGC	1 cut(s)	199
Sau3AI	GATC	2 cut(s)	30, 73
ScrFI	CCNGG	1 cut(s)	206
SetI	ASST	7 cut(s)	11, 52, 70, 135, 189, 243, 283
SfaNI	GCATC	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	2 cut(s)	91, 286
StyD4I	CCNGG	1 cut(s)	204
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	1 cut(s)	19
TaqI	TCGA	2 cut(s)	53, 230
TasI	AATT	2 cut(s)	91, 286
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	2 cut(s)	80, 183
Tru9I	TTAA	2 cut(s)	80, 183
TseI	GCWGC	1 cut(s)	198
TspDTI	ATGAA	2 cut(s)	135, 248
Van91I	CCANNNNNTGG	1 cut(s)	109
XmnI	GAANNNNTTC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.