Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0021665

Physical Location & Seq

Genomic Coordinates Forward (+)

53712989 .. 53713240

Gene Structure 252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG308100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGACATACCTGAGGATCAATTAACTATTGAAAATTGGATGTACCATTGTTTGGAGGCCAATGAACTGGATAAGCTAGTGAAGGATGATGATGACATTGACATGAGTAAACTACGGGAGATGGTTAAGCTTGGTCTTTGCTGCATCCAGGAGGAGCCATCATTGCGCCCTTCAATGAAGAAGGTGGTACTAATGCTGGAAGGGAATCTAGAGATACCATCCCCTCCAAATTCTTTCAGTTCCAGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

83

Amino Acids

9.53

Weight (kDa)

4.43

Isoelectric Point (pI)

62.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021665)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004126.1_g000011
rosa_rugosa	Rorug06G0192200
rosa_samantha	Rh6BG216500 Rh6BG217100 Rh6BG308100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	52
AclWI	GGATC	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	229
AfaI	GTAC	2 cut(s)	44, 189
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	2 cut(s)	32, 174
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	2 cut(s)	76, 130
AluI	AGCT	2 cut(s)	76, 130
AlwI	GGATC	1 cut(s)	24
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	141
ApoI	RAATTY	1 cut(s)	229
AspLEI	GCGC	1 cut(s)	168
AxyI	CCTNAGG	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	3 cut(s)	115, 166, 226
BciT130I	CCWGG	1 cut(s)	149
BfaI	CTAG	2 cut(s)	77, 209
BisI	GCNGC	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	143
Bme1390I	CCNGG	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	2 cut(s)	72, 243
Bse21I	CCTNAGG	1 cut(s)	12
Bse3DI	GCAATG	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	149
BseGI	GGATG	4 cut(s)	45, 91, 144, 218
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMI	GCAATG	1 cut(s)	161
BseNI	ACTGG	2 cut(s)	72, 243
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	128
BshFI	GGCC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	52
BsnI	GGCC	1 cut(s)	59
Bsp143I	GATC	1 cut(s)	16
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	4
BspLI	GGNNCC	1 cut(s)	156
BspPI	GGATC	1 cut(s)	24
BsrDI	GCAATG	1 cut(s)	161
BsrI	ACTGG	2 cut(s)	72, 243
BssMI	GATC	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	149
BstDEI	CTNAG	1 cut(s)	12
BstF5I	GGATG	4 cut(s)	45, 91, 144, 218
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	128
BstXI	CCANNNNNNTGG	1 cut(s)	67
Bsu36I	CCTNAGG	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	4 cut(s)	45, 91, 144, 218
CfoI	GCGC	1 cut(s)	168
Csp6I	GTAC	2 cut(s)	43, 188
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	4 cut(s)	59, 76, 130, 157
CviKI_1	RGCY	4 cut(s)	59, 76, 130, 157
CviQI	GTAC	2 cut(s)	43, 188
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
Eco81I	CCTNAGG	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	147
FaeI	CATG	1 cut(s)	106
FaiI	YATR	2 cut(s)	8, 104
FatI	CATG	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	142
FokI	GGATG	4 cut(s)	52, 98, 131, 205
Fsp4HI	GCNGC	1 cut(s)	142
FspBI	CTAG	2 cut(s)	77, 209
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	1 cut(s)	142
HaeIII	GGCC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	1 cut(s)	106
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	1 cut(s)	205
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	1 cut(s)	110
HpyAV	CCTTC	4 cut(s)	76, 175, 180, 194
HpyCH4V	TGCA	1 cut(s)	144
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	106
HspAI	GCGC	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	16
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	5 cut(s)	24, 53, 134, 161, 182
Lsp1109I	GCAGC	1 cut(s)	128
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	2 cut(s)	77, 209
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	1 cut(s)	190
MluCI	AATT	3 cut(s)	20, 34, 229
MnlI	CCTC	4 cut(s)	7, 49, 145, 234
MseI	TTAA	2 cut(s)	23, 126
MslI	CAYNNNNRTG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	163
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	205
PflMI	CCANNNNNTGG	1 cut(s)	52
PfoI	TCCNGGA	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	156
RsaI	GTAC	2 cut(s)	44, 189
RsaNI	GTAC	2 cut(s)	43, 188
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	23, 126
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	149
SetI	ASST	4 cut(s)	13, 78, 132, 186
SfaNI	GCATC	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	101
Sse9I	AATT	3 cut(s)	20, 34, 229
SspMI	CTAG	2 cut(s)	77, 209
StyD4I	CCNGG	1 cut(s)	147
TasI	AATT	3 cut(s)	20, 34, 229
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	2 cut(s)	23, 126
Tru9I	TTAA	2 cut(s)	23, 126
TseI	GCWGC	1 cut(s)	141
TspDTI	ATGAA	2 cut(s)	78, 191
Van91I	CCANNNNNTGG	1 cut(s)	52
XapI	RAATTY	1 cut(s)	229
XbaI	TCTAGA	1 cut(s)	208
XspI	CTAG	2 cut(s)	77, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.