Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0021665

Physical Location & Seq

Genomic Coordinates Reverse (-)

40844678 .. 40854879

Gene Structure 10202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG216500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGCCATACCTAAGGATCAAACAACTCTTGAGAATTGGATGTACCATTGTTTGGAGGCCAATGAACTGGATAAGCTAGTGAAAGATGATGATGAGATTGACACGAATAAACTTCGGGAGATGGTTAAGCTTGGTCTTTGTTGCATCCAGGAGGACCCATCATTGCGCCCTTCGATGAAGAAGGCTGACGTTCTTGATCTTCGGTCTGCCTTCGATTTGGTGATGTTCGACATCAATGATTTTCAGCCAAAACTGAGTCCTCCAAGGCCTCCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

92

Amino Acids

10.61

Weight (kDa)

4.62

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021665)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004126.1_g000011
rosa_rugosa	Rorug06G0192200
rosa_samantha	Rh6BG216500 Rh6BG217100 Rh6BG308100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	52
AclWI	GGATC	1 cut(s)	24
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	3 cut(s)	76, 130, 275
AluI	AGCT	3 cut(s)	76, 130, 275
AlwI	GGATC	1 cut(s)	24
AoxI	GGCC	3 cut(s)	3, 57, 266
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	154
AxyI	CCTNAGG	1 cut(s)	12
BalI	TGGCCA	1 cut(s)	5
BccI	CCATC	2 cut(s)	115, 166
BciT130I	CCWGG	1 cut(s)	149
BfaI	CTAG	1 cut(s)	77
Bme1390I	CCNGG	1 cut(s)	149
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	153
BpmI	CTGGAG	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	72
Bse21I	CCTNAGG	1 cut(s)	12
Bse3DI	GCAATG	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	1 cut(s)	263
BseGI	GGATG	2 cut(s)	45, 144
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMI	GCAATG	1 cut(s)	161
BseMII	CTCAG	1 cut(s)	245
BseNI	ACTGG	1 cut(s)	72
BshFI	GGCC	3 cut(s)	5, 59, 268
BslI	CCNNNNNNNGG	1 cut(s)	52
BsnI	GGCC	3 cut(s)	5, 59, 268
Bsp143I	GATC	2 cut(s)	16, 196
BspANI	GGCC	3 cut(s)	5, 59, 268
BspCNI	CTCAG	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	156
BspPI	GGATC	1 cut(s)	24
BsrDI	GCAATG	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	263
BssMI	GATC	2 cut(s)	16, 196
BssT1I	CCWWGG	1 cut(s)	263
Bst2UI	CCWGG	1 cut(s)	149
BstDEI	CTNAG	2 cut(s)	12, 254
BstF5I	GGATG	2 cut(s)	45, 144
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	2 cut(s)	19, 199
BstMBI	GATC	2 cut(s)	16, 196
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BstXI	CCANNNNNNTGG	1 cut(s)	67
Bsu36I	CCTNAGG	1 cut(s)	12
BsuRI	GGCC	3 cut(s)	5, 59, 268
BtsCI	GGATG	2 cut(s)	45, 144
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	43
CviJI	RGCY	8 cut(s)	5, 59, 76, 130, 185, 247, 268, 275
CviKI_1	RGCY	8 cut(s)	5, 59, 76, 130, 185, 247, 268, 275
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	2 cut(s)	12, 254
DpnI	GATC	2 cut(s)	18, 198
DpnII	GATC	2 cut(s)	16, 196
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	263
Eco147I	AGGCCT	1 cut(s)	268
Eco47I	GGWCC	1 cut(s)	154
Eco81I	CCTNAGG	1 cut(s)	12
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	263
ErhI	CCWWGG	1 cut(s)	263
FaiI	YATR	1 cut(s)	8
FokI	GGATG	2 cut(s)	52, 131
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	1 cut(s)	167
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	3 cut(s)	5, 59, 268
HhaI	GCGC	1 cut(s)	168
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	1 cut(s)	256
HphI	GGTGA	1 cut(s)	232
Hpy188III	TCNNGA	3 cut(s)	29, 116, 194
HpyAV	CCTTC	3 cut(s)	175, 180, 220
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	1 cut(s)	144
HpyF3I	CTNAG	2 cut(s)	12, 254
HpySE526I	ACGT	1 cut(s)	189
HspAI	GCGC	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	16, 196
LpnPI	CCDG	3 cut(s)	53, 134, 161
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	1 cut(s)	77
MaeII	ACGT	1 cut(s)	189
MalI	GATC	2 cut(s)	18, 198
MboI	GATC	2 cut(s)	16, 196
MboII	GAAGA	2 cut(s)	190, 191
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	34
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	265
MnlI	CCTC	4 cut(s)	49, 145, 270, 279
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	126
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
NdeII	GATC	2 cut(s)	16, 196
NlaIV	GGNNCC	1 cut(s)	156
PceI	AGGCCT	1 cut(s)	268
PflMI	CCANNNNNTGG	1 cut(s)	52
PfoI	TCCNGGA	1 cut(s)	147
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
PpuMI	RGGWCCY	1 cut(s)	154
Psp5II	RGGWCCY	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	154
PspPPI	RGGWCCY	1 cut(s)	154
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	126
Sau3AI	GATC	2 cut(s)	16, 196
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	1 cut(s)	265
ScrFI	CCNGG	1 cut(s)	149
SetI	ASST	5 cut(s)	13, 78, 132, 192, 277
SfaNI	GCATC	1 cut(s)	153
SgeI	CNNG	9 cut(s)	41, 80, 89, 115, 128, 143, 160, 161, 206
SinI	GGWCC	1 cut(s)	154
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	1 cut(s)	34
SseBI	AGGCCT	1 cut(s)	268
SspMI	CTAG	1 cut(s)	77
StuI	AGGCCT	1 cut(s)	268
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	1 cut(s)	263
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	3 cut(s)	173, 213, 228
TaqII	GACCGA	1 cut(s)	192
TasI	AATT	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TspDTI	ATGAA	2 cut(s)	78, 191
Van91I	CCANNNNNTGG	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	154
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.