Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004211.1

Orthogroup ID

OG0025578

Physical Location & Seq

Genomic Coordinates Reverse (-)

49004 .. 52762

Gene Structure 3759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004211.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

atgttgaaggatatgctaaacgagagacgcgtttcccctgagacatgccgaggagatttccttgataatctcgtcgttgacatggaaaaggaggagtttatgacagaggattttgcagtccaattgatatttgggggctcatttactaactttgagtctgttcaccagtatattggcattatctttaagtttactggcggagcatcctttagttctgcaggagttgactgctttacaattccagctgggtggacagttatggttgtcacctctgctcttcatatgaatcccaacacattcaaagatcccctcgtgttcaatccatggcgttggaagctgcagcccagcctcctgcacagcctccctgcagcctgcaacccgcgcactactgctgcccccgcagctcctacacaccacttacaagcccgcccgcgccctgcttgcttgcacaccagctcgcctacagccctgcgcaccagcccgcctgcacacctactcaccagcccgcctgcagccctacgcaccagcccgcctgcagccctgcgcaccagcccgcctgcacacctgatatcgaatgaacctagactcgactttcccatgcttgattcaacaggctcagattaccacagttgggtaaccgatgttgagaaccatctcacttcaaagggaatattacccataatccaggcacctaactcggatcttgtgttcgtgcgagcacctacaaaccatgctcaagcagttatcttgatgcgatgccatatggacaaggcactcagatcggagtttaatggaacaatctacgctttgctgatttcaagtctgttgctgagtataattcagaggctcttcgcttacagagggcgcaaggagtggtaccctaagaatgggggacatgagggacgtttgggcccatataacctccctaaccaggaaggaaaccgcaagtttggtgtggatacacgtggtggtaatgccacatgtgggagaggaggtcgtggtggtggcaccaaccctcctagggaaagcccgcaacgtgcccaacgtgcagctcaattaaagggaggcaaccacaatgatgagtgtcatcaatgtgtggatcaattgagcattgaagaagaagaagaagatggtggagatgtcaatctcaccatagaggacttcaaagctgaagatgaagtgcacaaggatgcagcagactttgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

402

Amino Acids

44.27

Weight (kDa)

6.06

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025578)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004211.1_g000015
rosa_roxburghii	Rroxscaffold_7G00188100
rosa_samantha	Rh6AG243200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	473, 545
Acc65I	GGTACC	1 cut(s)	876
AccB1I	GGYRCC	3 cut(s)	688, 876, 1007
AccII	CGCG	3 cut(s)	30, 382, 433
AclWI	GGATC	3 cut(s)	299, 708, 1107
AcuI	CTGAAG	1 cut(s)	1191
AcvI	CACGTG	1 cut(s)	965
AdeI	CACNNNGTG	1 cut(s)	968
AfaI	GTAC	1 cut(s)	878
AfiI	CCNNNNNNNGG	5 cut(s)	631, 887, 931, 984, 1021
AflIII	ACRYGT	3 cut(s)	28, 962, 980
AgsI	TTSAA	8 cut(s)	7, 301, 319, 609, 663, 819, 1115, 1165
AjnI	CCWGG	2 cut(s)	684, 930
AloI	GAACNNNNNNTCC	2 cut(s)	692, 724
AluBI	AGCT	6 cut(s)	245, 337, 404, 456, 1052, 1169
AluI	AGCT	6 cut(s)	245, 337, 404, 456, 1052, 1169
Alw21I	GWGCWC	2 cut(s)	721, 1185
Alw26I	GTCTC	2 cut(s)	19, 35
Alw44I	GTGCAC	1 cut(s)	1181
AlwI	GGATC	3 cut(s)	299, 708, 1107
AoxI	GGCC	1 cut(s)	910
ApaI	GGGCCC	1 cut(s)	914
ApaLI	GTGCAC	1 cut(s)	1181
ApeKI	GCWGC	9 cut(s)	337, 340, 368, 392, 401, 512, 536, 1049, 1193
Asp718I	GGTACC	1 cut(s)	876
AspA2I	CCTAGG	1 cut(s)	1019
AspLEI	GCGC	5 cut(s)	384, 435, 474, 546, 867
AspS9I	GGNCC	2 cut(s)	910, 911
AsuHPI	GGTGA	4 cut(s)	155, 259, 490, 1141
AvrII	CCTAGG	1 cut(s)	1019
BaeGI	GKGCMC	3 cut(s)	914, 1042, 1185
BanI	GGYRCC	3 cut(s)	688, 876, 1007
BanII	GRGCYC	2 cut(s)	140, 914
BauI	CACGAG	1 cut(s)	311
BbrPI	CACGTG	1 cut(s)	965
Bbv12I	GWGCWC	2 cut(s)	721, 1185
BbvI	GCAGC	9 cut(s)	324, 352, 379, 380, 413, 524, 548, 1061, 1205
BccI	CCATC	2 cut(s)	660, 1124
BcgI	CGANNNNNNTGC	4 cut(s)	678, 712, 762, 796
BciT130I	CCWGG	2 cut(s)	686, 932
BciVI	GTATCC	1 cut(s)	952
BcoDI	GTCTC	2 cut(s)	19, 35
BfaI	CTAG	2 cut(s)	582, 1020
BfmI	CTRYAG	6 cut(s)	216, 338, 366, 462, 510, 534
BfuI	GTATCC	1 cut(s)	952
BisI	GCNGC	9 cut(s)	338, 341, 369, 393, 402, 513, 537, 1050, 1194
BlnI	CCTAGG	1 cut(s)	1019
BlsI	GCNGC	9 cut(s)	339, 342, 370, 394, 403, 514, 538, 1051, 1195
Bme1390I	CCNGG	2 cut(s)	686, 932
BmgT120I	GGNCC	2 cut(s)	910, 911
BmiI	GGNNCC	4 cut(s)	690, 878, 912, 1009
BmrFI	CCNGG	2 cut(s)	686, 932
BmsI	GCATC	4 cut(s)	212, 741, 746, 1180
BpuEI	CTTGAG	1 cut(s)	720
BsaAI	YACGTR	1 cut(s)	965
BsaBI	GATNNNNATC	1 cut(s)	1143
BsaJI	CCNNGG	3 cut(s)	49, 323, 1019
BsaXI	ACNNNNNCTCC	4 cut(s)	979, 1000, 1009, 1030
Bsc4I	CCNNNNNNNGG	5 cut(s)	631, 887, 931, 984, 1021
Bse1I	ACTGG	2 cut(s)	166, 199
Bse8I	GATNNNNATC	1 cut(s)	1143
BseBI	CCWGG	2 cut(s)	686, 932
BseDI	CCNNGG	3 cut(s)	49, 323, 1019
BseGI	GGATG	2 cut(s)	203, 1195
BseJI	GATNNNNATC	1 cut(s)	1143
BseLI	CCNNNNNNNGG	5 cut(s)	631, 887, 931, 984, 1021
BseMII	CTCAG	4 cut(s)	30, 630, 790, 821
BseNI	ACTGG	2 cut(s)	166, 199
BseRI	GAGGAG	3 cut(s)	66, 107, 1005
BseSI	GKGCMC	3 cut(s)	914, 1042, 1185
BseXI	GCAGC	9 cut(s)	324, 352, 379, 380, 413, 524, 548, 1061, 1205
BseYI	CCCAGC	2 cut(s)	245, 344
BsgI	GTGCAG	4 cut(s)	338, 471, 543, 1068
Bsh1236I	CGCG	3 cut(s)	30, 382, 433
BshFI	GGCC	1 cut(s)	912
BshNI	GGYRCC	3 cut(s)	688, 876, 1007
BsiHKAI	GWGCWC	2 cut(s)	721, 1185
BslFI	GGGAC	2 cut(s)	906, 915
BslI	CCNNNNNNNGG	5 cut(s)	631, 887, 931, 984, 1021
BsmAI	GTCTC	2 cut(s)	19, 35
BsmBI	CGTCTC	1 cut(s)	19
BsmFI	GGGAC	2 cut(s)	906, 915
BsnI	GGCC	1 cut(s)	912
Bsp120I	GGGCCC	1 cut(s)	910
Bsp1286I	GDGCHC	5 cut(s)	140, 721, 914, 1042, 1185
Bsp143I	GATC	4 cut(s)	304, 700, 779, 1099
Bsp19I	CCATGG	1 cut(s)	323
BspANI	GGCC	1 cut(s)	912
BspCNI	CTCAG	4 cut(s)	31, 629, 789, 822
BspFNI	CGCG	3 cut(s)	30, 382, 433
BspLI	GGNNCC	4 cut(s)	690, 878, 912, 1009
BspMAI	CTGCAG	5 cut(s)	220, 342, 370, 514, 538
BspPI	GGATC	3 cut(s)	299, 708, 1107
BspQI	GCTCTTC	2 cut(s)	282, 854
BspT107I	GGYRCC	3 cut(s)	688, 876, 1007
BsrI	ACTGG	2 cut(s)	166, 199
BssECI	CCNNGG	3 cut(s)	49, 323, 1019
BssMI	GATC	4 cut(s)	304, 700, 779, 1099
BssSI	CACGAG	1 cut(s)	311
BssT1I	CCWWGG	2 cut(s)	323, 1019
Bst2BI	CACGAG	1 cut(s)	311
Bst2UI	CCWGG	2 cut(s)	686, 932
Bst4CI	ACNGT	2 cut(s)	256, 629
Bst6I	CTCTTC	2 cut(s)	282, 854
BstBAI	YACGTR	1 cut(s)	965
BstDEI	CTNAG	5 cut(s)	39, 616, 776, 830, 882
BstDSI	CCRYGG	1 cut(s)	323
BstEII	GGTNACC	1 cut(s)	634
BstF5I	GGATG	2 cut(s)	203, 1195
BstFNI	CGCG	3 cut(s)	30, 382, 433
BstHHI	GCGC	5 cut(s)	384, 435, 474, 546, 867
BstKTI	GATC	4 cut(s)	307, 703, 782, 1102
BstMAI	GTCTC	2 cut(s)	19, 35
BstMBI	GATC	4 cut(s)	304, 700, 779, 1099
BstMWI	GCNNNNNNNGC	6 cut(s)	334, 381, 398, 401, 441, 1046
BstNI	CCWGG	2 cut(s)	686, 932
BstNSI	RCATGY	2 cut(s)	48, 984
BstPI	GGTNACC	1 cut(s)	634
BstSCI	CCNGG	2 cut(s)	684, 930
BstSFI	CTRYAG	6 cut(s)	216, 338, 366, 462, 510, 534
BstSLI	GKGCMC	3 cut(s)	914, 1042, 1185
BstUI	CGCG	3 cut(s)	30, 382, 433
BstV1I	GCAGC	9 cut(s)	324, 352, 379, 380, 413, 524, 548, 1061, 1205
BstX2I	RGATCY	2 cut(s)	304, 700
BstXI	CCANNNNNNTGG	3 cut(s)	173, 249, 330
BstYI	RGATCY	2 cut(s)	304, 700
BsuI	GTATCC	1 cut(s)	952
BsuRI	GGCC	1 cut(s)	912
BtgI	CCRYGG	1 cut(s)	323
BtgZI	GCGATG	1 cut(s)	769
BtsCI	GGATG	2 cut(s)	203, 1195
CfoI	GCGC	5 cut(s)	384, 435, 474, 546, 867
Cfr13I	GGNCC	2 cut(s)	910, 911
CseI	GACGC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	877
CviAII	CATG	7 cut(s)	45, 82, 324, 598, 731, 896, 981
CviQI	GTAC	1 cut(s)	877
DdeI	CTNAG	5 cut(s)	39, 616, 776, 830, 882
DpnI	GATC	4 cut(s)	306, 702, 781, 1101
DpnII	GATC	4 cut(s)	304, 700, 779, 1099
DraIII	CACNNNGTG	1 cut(s)	968
Eam1104I	CTCTTC	2 cut(s)	282, 854
EarI	CTCTTC	2 cut(s)	282, 854
EciI	GGCGGA	1 cut(s)	213
Eco130I	CCWWGG	2 cut(s)	323, 1019
Eco24I	GRGCYC	2 cut(s)	140, 914
Eco32I	GATATC	1 cut(s)	570
Eco57I	CTGAAG	1 cut(s)	1191
Eco72I	CACGTG	1 cut(s)	965
Eco91I	GGTNACC	1 cut(s)	634
EcoO65I	GGTNACC	1 cut(s)	634
EcoRII	CCWGG	2 cut(s)	684, 930
EcoRV	GATATC	1 cut(s)	570
EcoT14I	CCWWGG	2 cut(s)	323, 1019
EcoT38I	GRGCYC	2 cut(s)	140, 914
ErhI	CCWWGG	2 cut(s)	323, 1019
Esp3I	CGTCTC	1 cut(s)	19
FaeI	CATG	7 cut(s)	48, 85, 327, 601, 734, 899, 984
FaqI	GGGAC	2 cut(s)	906, 915
FatI	CATG	7 cut(s)	44, 81, 323, 597, 730, 895, 980
FauI	CCCGC	9 cut(s)	387, 406, 434, 438, 489, 513, 537, 561, 1038
FauNDI	CATATG	2 cut(s)	282, 762
Fnu4HI	GCNGC	9 cut(s)	338, 341, 369, 393, 402, 513, 537, 1050, 1194
FokI	GGATG	2 cut(s)	190, 1202
FriOI	GRGCYC	2 cut(s)	140, 914
Fsp4HI	GCNGC	9 cut(s)	338, 341, 369, 393, 402, 513, 537, 1050, 1194
FspBI	CTAG	2 cut(s)	582, 1020
FspI	TGCGCA	2 cut(s)	473, 545
GlaI	GCGC	5 cut(s)	383, 434, 473, 545, 866
GluI	GCNGC	9 cut(s)	338, 341, 369, 393, 402, 513, 537, 1050, 1194
GsaI	CCCAGC	2 cut(s)	249, 348
HaeIII	GGCC	1 cut(s)	912
HgaI	GACGC	1 cut(s)	36
HhaI	GCGC	5 cut(s)	384, 435, 474, 546, 867
Hin1II	CATG	7 cut(s)	48, 85, 327, 601, 734, 899, 984
Hin6I	GCGC	5 cut(s)	382, 433, 472, 544, 865
HinP1I	GCGC	5 cut(s)	382, 433, 472, 544, 865
HincII	GTYRAC	2 cut(s)	79, 226
HindII	GTYRAC	2 cut(s)	79, 226
HinfI	GANTC	4 cut(s)	155, 286, 585, 605
HphI	GGTGA	4 cut(s)	155, 259, 490, 1141
Hpy166II	GTNNAC	6 cut(s)	79, 163, 192, 226, 252, 1183
Hpy188I	TCNGA	5 cut(s)	619, 700, 779, 784, 843
Hpy188III	TCNNGA	1 cut(s)	748
Hpy8I	GTNNAC	6 cut(s)	79, 163, 192, 226, 252, 1183
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	1 cut(s)	929
HpyCH4III	ACNGT	2 cut(s)	256, 629
HpyCH4IV	ACGT	4 cut(s)	904, 964, 1036, 1045
HpyF10VI	GCNNNNNNNGC	6 cut(s)	334, 381, 398, 401, 441, 1046
HpyF3I	CTNAG	5 cut(s)	39, 616, 776, 830, 882
HpySE526I	ACGT	4 cut(s)	904, 964, 1036, 1045
Hsp92II	CATG	7 cut(s)	48, 85, 327, 601, 734, 899, 984
HspAI	GCGC	5 cut(s)	382, 433, 472, 544, 865
KpnI	GGTACC	1 cut(s)	880
Kzo9I	GATC	4 cut(s)	304, 700, 779, 1099
LguI	GCTCTTC	2 cut(s)	282, 854
LmnI	GCTCC	2 cut(s)	200, 409
Lsp1109I	GCAGC	9 cut(s)	324, 352, 379, 380, 413, 524, 548, 1061, 1205
LweI	GCATC	4 cut(s)	212, 741, 746, 1180
MaeI	CTAG	2 cut(s)	582, 1020
MaeII	ACGT	4 cut(s)	904, 964, 1036, 1045
MaeIII	GTNAC	2 cut(s)	265, 634
MalI	GATC	4 cut(s)	306, 702, 781, 1101
MboI	GATC	4 cut(s)	304, 700, 779, 1099
MboII	GAAGA	8 cut(s)	269, 841, 1127, 1130, 1133, 1136, 1139, 1184
MfeI	CAATTG	2 cut(s)	122, 1103
MflI	RGATCY	2 cut(s)	304, 700
MhlI	GDGCHC	5 cut(s)	140, 721, 914, 1042, 1185
MluCI	AATT	5 cut(s)	122, 237, 837, 1055, 1103
MluI	ACGCGT	1 cut(s)	28
MlyI	GAGTC	2 cut(s)	164, 579
MmeI	TCCRAC	1 cut(s)	311
MseI	TTAA	3 cut(s)	186, 789, 1058
MslI	CAYNNNNRTG	3 cut(s)	1077, 1092, 1188
MspA1I	CMGCKG	1 cut(s)	245
MspR9I	CCNGG	2 cut(s)	686, 932
MunI	CAATTG	2 cut(s)	122, 1103
MvaI	CCWGG	2 cut(s)	686, 932
MvnI	CGCG	3 cut(s)	30, 382, 433
MwoI	GCNNNNNNNGC	6 cut(s)	334, 381, 398, 401, 441, 1046
NcoI	CCATGG	1 cut(s)	323
NdeI	CATATG	2 cut(s)	282, 762
NdeII	GATC	4 cut(s)	304, 700, 779, 1099
NlaIII	CATG	7 cut(s)	48, 85, 327, 601, 734, 899, 984
NlaIV	GGNNCC	4 cut(s)	690, 878, 912, 1009
NmeAIII	GCCGAG	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	265
NsbI	TGCGCA	2 cut(s)	473, 545
NspI	RCATGY	2 cut(s)	48, 984
PciI	ACATGT	1 cut(s)	980
PciSI	GCTCTTC	2 cut(s)	282, 854
PcsI	WCGNNNNNNNCGW	2 cut(s)	27, 1042
PfeI	GAWTC	2 cut(s)	286, 605
PkrI	GCNGC	9 cut(s)	339, 342, 370, 394, 403, 514, 538, 1051, 1195
PleI	GAGTC	2 cut(s)	163, 579
PmaCI	CACGTG	1 cut(s)	965
PmlI	CACGTG	1 cut(s)	965
PpsI	GAGTC	2 cut(s)	163, 579
Ppu21I	YACGTR	1 cut(s)	965
PscI	ACATGT	1 cut(s)	980
Psp6I	CCWGG	2 cut(s)	684, 930
PspCI	CACGTG	1 cut(s)	965
PspEI	GGTNACC	1 cut(s)	634
PspFI	CCCAGC	2 cut(s)	245, 344
PspGI	CCWGG	2 cut(s)	684, 930
PspN4I	GGNNCC	4 cut(s)	690, 878, 912, 1009
PspOMI	GGGCCC	1 cut(s)	910
PspPI	GGNCC	2 cut(s)	910, 911
PstI	CTGCAG	5 cut(s)	220, 342, 370, 514, 538
PsuI	RGATCY	2 cut(s)	304, 700
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	1 cut(s)	878
RsaNI	GTAC	1 cut(s)	877
RseI	CAYNNNNRTG	3 cut(s)	1077, 1092, 1188
SapI	GCTCTTC	2 cut(s)	282, 854
SaqAI	TTAA	3 cut(s)	186, 789, 1058
SatI	GCNGC	9 cut(s)	338, 341, 369, 393, 402, 513, 537, 1050, 1194
Sau3AI	GATC	4 cut(s)	304, 700, 779, 1099
Sau96I	GGNCC	2 cut(s)	910, 911
SchI	GAGTC	2 cut(s)	164, 579
ScrFI	CCNGG	2 cut(s)	686, 932
SduI	GDGCHC	5 cut(s)	140, 721, 914, 1042, 1185
SfaNI	GCATC	4 cut(s)	212, 741, 746, 1180
SfcI	CTRYAG	6 cut(s)	216, 338, 366, 462, 510, 534
SmiMI	CAYNNNNRTG	3 cut(s)	1077, 1092, 1188
SmlI	CTYRAG	1 cut(s)	735
SmoI	CTYRAG	1 cut(s)	735
Sse9I	AATT	5 cut(s)	122, 237, 837, 1055, 1103
SspI	AATATT	1 cut(s)	672
SspMI	CTAG	2 cut(s)	582, 1020
StyD4I	CCNGG	2 cut(s)	684, 930
StyI	CCWWGG	2 cut(s)	323, 1019
TaaI	ACNGT	2 cut(s)	256, 629
TaiI	ACGT	4 cut(s)	907, 967, 1039, 1048
TaqI	TCGA	2 cut(s)	572, 588
TasI	AATT	5 cut(s)	122, 237, 837, 1055, 1103
TfiI	GAWTC	2 cut(s)	286, 605
Tru1I	TTAA	3 cut(s)	186, 789, 1058
Tru9I	TTAA	3 cut(s)	186, 789, 1058
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	9 cut(s)	337, 340, 368, 392, 401, 512, 536, 1049, 1193
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	4 cut(s)	269, 299, 591, 1191
VneI	GTGCAC	1 cut(s)	1181
XceI	RCATGY	2 cut(s)	48, 984
XcmI	CCANNNNNNNNNTGG	1 cut(s)	128
XmaJI	CCTAGG	1 cut(s)	1019
XspI	CTAG	2 cut(s)	582, 1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.