Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0025578

Physical Location & Seq

Genomic Coordinates Forward (+)

27602048 .. 27602440

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00188100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGAAGGAGCACAAGAAGGTAATAACCATGTTGAAGGTTATGCTAAACGAAAGACGCGTTTCCCCTGAGACATGCCGAGGAGATTTCCTTGATAATCTCTTCGTTGACATGGAAAAGGAGGAGTTTCTCACAGAGGATTTTGCAGTCCAACTGATATTTGGGGGCTTATTTGCTAACTATGAGTCCTTTTCACCAGTATTGGCATTATCTCTAAGTTTACTGGCAAAGCATCCTTTAGTTCTGCAGGAGTTGACTGCTGAGCATGAGGGAATTCTCAACCACAGAAAACACCCAGACTCTCCACTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

103

Amino Acids

11.81

Weight (kDa)

5.46

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	5 - 99	1.4e-06	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0025578)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004211.1_g000015
rosa_roxburghii	Rroxscaffold_7G00188100
rosa_samantha	Rh6AG243200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	270
AflIII	ACRYGT	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	34
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	270
AsuHPI	GGTGA	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	12
BcoDI	GTCTC	1 cut(s)	62
BfmI	CTRYAG	1 cut(s)	242
BlpI	GCTNAGC	1 cut(s)	258
BmsI	GCATC	1 cut(s)	238
Bpu1102I	GCTNAGC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	194, 225
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	1 cut(s)	229
BseMII	CTCAG	2 cut(s)	57, 249
BseNI	ACTGG	2 cut(s)	194, 225
BseRI	GAGGAG	2 cut(s)	93, 134
Bsh1236I	CGCG	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	12
BsmAI	GTCTC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp1720I	GCTNAGC	1 cut(s)	258
BspCNI	CTCAG	2 cut(s)	58, 250
BspFNI	CGCG	1 cut(s)	57
BspMAI	CTGCAG	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	194, 225
BssECI	CCNNGG	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	104
BstDEI	CTNAG	3 cut(s)	66, 212, 258
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	1 cut(s)	57
BstMAI	GTCTC	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	75
BstSFI	CTRYAG	1 cut(s)	242
BstUI	CGCG	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	229
CseI	GACGC	1 cut(s)	63
CviAII	CATG	5 cut(s)	28, 72, 109, 263, 309
CviJI	RGCY	1 cut(s)	165
CviKI_1	RGCY	1 cut(s)	165
DdeI	CTNAG	3 cut(s)	66, 212, 258
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
EcoRI	GAATTC	1 cut(s)	270
FaeI	CATG	5 cut(s)	31, 75, 112, 266, 312
FaiI	YATR	7 cut(s)	29, 41, 73, 110, 180, 264, 310
FatI	CATG	5 cut(s)	27, 71, 108, 262, 308
FokI	GGATG	1 cut(s)	216
HgaI	GACGC	1 cut(s)	63
Hin1II	CATG	5 cut(s)	31, 75, 112, 266, 312
HincII	GTYRAC	2 cut(s)	106, 252
HindII	GTYRAC	2 cut(s)	106, 252
HinfI	GANTC	2 cut(s)	182, 296
HphI	GGTGA	1 cut(s)	183
Hpy166II	GTNNAC	3 cut(s)	106, 218, 252
Hpy8I	GTNNAC	3 cut(s)	106, 218, 252
HpyAV	CCTTC	2 cut(s)	10, 28
HpyCH4V	TGCA	2 cut(s)	143, 244
HpyF3I	CTNAG	3 cut(s)	66, 212, 258
Hsp92II	CATG	5 cut(s)	31, 75, 112, 266, 312
LmnI	GCTCC	1 cut(s)	7
LpnPI	CCDG	5 cut(s)	78, 206, 207, 230, 306
LweI	GCATC	1 cut(s)	238
MboII	GAAGA	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	1 cut(s)	270
MluI	ACGCGT	1 cut(s)	55
MlyI	GAGTC	2 cut(s)	191, 290
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	4 cut(s)	71, 112, 127, 259
MslI	CAYNNNNRTG	1 cut(s)	307
MvnI	CGCG	1 cut(s)	57
NlaIII	CATG	5 cut(s)	31, 75, 112, 266, 312
NmeAIII	GCCGAG	1 cut(s)	101
NspI	RCATGY	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PleI	GAGTC	2 cut(s)	190, 290
PpsI	GAGTC	2 cut(s)	190, 290
PstI	CTGCAG	1 cut(s)	246
RseI	CAYNNNNRTG	1 cut(s)	307
SchI	GAGTC	2 cut(s)	191, 290
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	2 cut(s)	21, 39
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	307
Sse9I	AATT	1 cut(s)	270
TasI	AATT	1 cut(s)	270
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	270
XceI	RCATGY	1 cut(s)	75
XcmI	CCANNNNNNNNNTGG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.