Rmu_sc0004226.1_g000008

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004226.1
OG0020744
Physical Location & Seq
Forward (+)
10902 .. 11717
816 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 372 bp
atggtgaagaaggtgctcatgaatatgagtggtttgtatcagaagaacgcgtacaacccttctactaagattatgtttgctcagggccttgctgggttggccggtgagaaatgggctcttcaccggaggatggcaacccaagccttcaccgtggagagagtcaagggttgggtgcctgaaattgtggctagtgccacaaacatgcttgagaaatgggggagtttgaaaggggaaaaagatgagtttgagttggatgttcatgaagagcttcatgaactcttgatggatatcatatccagggcaacctttggaagtagttttgaggaagggaagcgtatattaaattacaagaacaacagaatctttatataa

Protein Analysis

123

Amino Acids

14.08

Weight (kDa)

8.89

Isoelectric Point (pI)

28.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 111 1.1e-11 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020744)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004226.1_g000008 Rmu_sc0014374.1_g000006
rosa_rugosa Rorug06G0298400
rosa_samantha Rh6AG411100
rosa_wichuraiana Rw0G002160 Rw6G035970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 172
AccII CGCG 1 cut(s) 50
AcoI YGGCCR 1 cut(s) 99
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 130
AflIII ACRYGT 1 cut(s) 48
AgsI TTSAA 1 cut(s) 226
AjnI CCWGG 1 cut(s) 296
AluBI AGCT 1 cut(s) 268
AluI AGCT 1 cut(s) 268
Alw21I GWGCWC 1 cut(s) 18
AoxI GGCC 2 cut(s) 85, 99
Asp700I GAANNNNTTC 1 cut(s) 267
AspS9I GGNCC 1 cut(s) 85
AsuHPI GGTGA 4 cut(s) 16, 113, 116, 139
BanI GGYRCC 1 cut(s) 172
BanII GRGCYC 1 cut(s) 118
BarI GAAGNNNNNNTAC 2 cut(s) 35, 67
Bbv12I GWGCWC 1 cut(s) 18
BccI CCATC 2 cut(s) 124, 277
BciT130I CCWGG 1 cut(s) 298
BfaI CTAG 1 cut(s) 189
Bme1390I CCNGG 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 298
Bpu10I CCTNAGC 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 227
BsaBI GATNNNNATC 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 150, 297
BsaWI WCCGGW 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse118I RCCGGY 1 cut(s) 101
Bse8I GATNNNNATC 1 cut(s) 287
BseBI CCWGG 1 cut(s) 298
BseDI CCNNGG 2 cut(s) 150, 297
BseGI GGATG 2 cut(s) 135, 259
BseJI GATNNNNATC 1 cut(s) 287
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMII CTCAG 1 cut(s) 95
BseYI CCCAGC 1 cut(s) 92
Bsh1236I CGCG 1 cut(s) 50
BshFI GGCC 2 cut(s) 87, 101
BshNI GGYRCC 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 2 cut(s) 102, 124
BslI CCNNNNNNNGG 1 cut(s) 130
BsnI GGCC 2 cut(s) 87, 101
Bsp1286I GDGCHC 2 cut(s) 18, 118
BspANI GGCC 2 cut(s) 87, 101
BspCNI CTCAG 1 cut(s) 94
BspFNI CGCG 1 cut(s) 50
BspHI TCATGA 3 cut(s) 18, 259, 271
BspLI GGNNCC 1 cut(s) 174
BspQI GCTCTTC 2 cut(s) 123, 258
BspT107I GGYRCC 1 cut(s) 172
BsrFI RCCGGY 1 cut(s) 101
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 2 cut(s) 150, 297
Bst2UI CCWGG 1 cut(s) 298
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 2 cut(s) 123, 258
BstDEI CTNAG 2 cut(s) 66, 81
BstDSI CCRYGG 1 cut(s) 150
BstF5I GGATG 2 cut(s) 135, 259
BstFNI CGCG 1 cut(s) 50
BstMWI GCNNNNNNNGC 2 cut(s) 98, 140
BstNI CCWGG 1 cut(s) 298
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 296
BstUI CGCG 1 cut(s) 50
BsuRI GGCC 2 cut(s) 87, 101
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 2 cut(s) 135, 259
CciI TCATGA 3 cut(s) 18, 259, 271
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 52
CviAII CATG 4 cut(s) 19, 202, 260, 272
CviJI RGCY 6 cut(s) 87, 101, 116, 143, 188, 268
CviKI_1 RGCY 6 cut(s) 87, 101, 116, 143, 188, 268
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 2 cut(s) 66, 81
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 2 cut(s) 123, 258
EarI CTCTTC 2 cut(s) 123, 258
Eco24I GRGCYC 1 cut(s) 118
Eco32I GATATC 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 296
EcoRV GATATC 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 118
FaeI CATG 4 cut(s) 22, 205, 263, 275
FatI CATG 4 cut(s) 18, 201, 259, 271
FokI GGATG 2 cut(s) 142, 266
FriOI GRGCYC 1 cut(s) 118
FspBI CTAG 1 cut(s) 189
GsaI CCCAGC 1 cut(s) 96
HaeIII GGCC 2 cut(s) 87, 101
HapII CCGG 2 cut(s) 102, 124
Hin1II CATG 4 cut(s) 22, 205, 263, 275
HinfI GANTC 2 cut(s) 159, 360
HpaII CCGG 2 cut(s) 102, 124
HphI GGTGA 4 cut(s) 16, 113, 116, 139
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 4 cut(s) 19, 260, 272, 280
HpyAV CCTTC 4 cut(s) 4, 69, 154, 320
HpyCH4III ACNGT 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 140
HpyF3I CTNAG 2 cut(s) 66, 81
Hsp92II CATG 4 cut(s) 22, 205, 263, 275
LguI GCTCTTC 2 cut(s) 123, 258
LpnPI CCDG 7 cut(s) 68, 78, 115, 137, 189, 283, 310
MaeI CTAG 1 cut(s) 189
MboII GAAGA 4 cut(s) 19, 55, 110, 275
MhlI GDGCHC 2 cut(s) 18, 118
MluCI AATT 2 cut(s) 180, 343
MluI ACGCGT 1 cut(s) 48
MlyI GAGTC 1 cut(s) 168
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 2 cut(s) 120, 316
MroXI GAANNNNTTC 1 cut(s) 267
MseI TTAA 1 cut(s) 341
MslI CAYNNNNRTG 2 cut(s) 23, 200
MspI CCGG 2 cut(s) 102, 124
MspR9I CCNGG 1 cut(s) 298
MvaI CCWGG 1 cut(s) 298
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 2 cut(s) 98, 140
NlaIII CATG 4 cut(s) 22, 205, 263, 275
NlaIV GGNNCC 1 cut(s) 174
NspI RCATGY 1 cut(s) 205
PagI TCATGA 3 cut(s) 18, 259, 271
PciSI GCTCTTC 2 cut(s) 123, 258
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 1 cut(s) 360
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 296
PspFI CCCAGC 1 cut(s) 92
PspGI CCWGG 1 cut(s) 296
PspN4I GGNNCC 1 cut(s) 174
PspPI GGNCC 1 cut(s) 85
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
RseI CAYNNNNRTG 2 cut(s) 23, 200
SapI GCTCTTC 2 cut(s) 123, 258
SaqAI TTAA 1 cut(s) 341
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 1 cut(s) 168
ScrFI CCNGG 1 cut(s) 298
SduI GDGCHC 2 cut(s) 18, 118
SetI ASST 3 cut(s) 15, 270, 308
SmiMI CAYNNNNRTG 2 cut(s) 23, 200
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 2 cut(s) 180, 343
SspMI CTAG 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 296
TaaI ACNGT 1 cut(s) 151
TasI AATT 2 cut(s) 180, 343
TfiI GAWTC 1 cut(s) 360
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TspDTI ATGAA 5 cut(s) 35, 248, 260, 276, 288
XceI RCATGY 1 cut(s) 205
XmnI GAANNNNTTC 1 cut(s) 267
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.