Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014374.1

Orthogroup ID

OG0020744

Physical Location & Seq

Genomic Coordinates Reverse (-)

22928 .. 23709

Gene Structure 782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014374.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atggtgaagaaggtgctcatgaatatgagtggtttgtatcagaagaacgcgtacaacccttctactaagattatgtttgctcagggccttgctgggttggccggtgagaaatgggctcttcaccggaggattgcaacccaagccttcatcatggagagagtcaagggttgggtgcctgaaattgtggctagtgccacaaacatgcttgagaaatgggggagtttgaaaggggaaaaagatgagtttgagttggatgttcatgaagagcttcatgaactcttgatggatatcatatacagggcaacctttggaagtagttttgaggaagggaagcgtatattaaattacaagaacaacagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

120

Amino Acids

13.81

Weight (kDa)

8.86

Isoelectric Point (pI)

24.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020744)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004226.1_g000008 Rmu_sc0014374.1_g000006
rosa_rugosa	Rorug06G0298400
rosa_samantha	Rh6AG411100
rosa_wichuraiana	Rw0G002160 Rw6G035970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	172
AccII	CGCG	1 cut(s)	50
AcoI	YGGCCR	1 cut(s)	99
AfaI	GTAC	1 cut(s)	53
AflIII	ACRYGT	1 cut(s)	48
AgsI	TTSAA	1 cut(s)	226
AluBI	AGCT	1 cut(s)	268
AluI	AGCT	1 cut(s)	268
Alw21I	GWGCWC	1 cut(s)	18
AoxI	GGCC	2 cut(s)	85, 99
Asp700I	GAANNNNTTC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	3 cut(s)	16, 113, 116
BanI	GGYRCC	1 cut(s)	172
BanII	GRGCYC	1 cut(s)	118
BarI	GAAGNNNNNNTAC	2 cut(s)	35, 67
Bbv12I	GWGCWC	1 cut(s)	18
BccI	CCATC	1 cut(s)	277
BfaI	CTAG	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	174
Bpu10I	CCTNAGC	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	287
BsaWI	WCCGGW	1 cut(s)	123
Bse118I	RCCGGY	1 cut(s)	101
Bse8I	GATNNNNATC	1 cut(s)	287
BseGI	GGATG	1 cut(s)	259
BseJI	GATNNNNATC	1 cut(s)	287
BseMII	CTCAG	1 cut(s)	95
BseYI	CCCAGC	1 cut(s)	92
Bsh1236I	CGCG	1 cut(s)	50
BshFI	GGCC	2 cut(s)	87, 101
BshNI	GGYRCC	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	18
BsiSI	CCGG	2 cut(s)	102, 124
BsnI	GGCC	2 cut(s)	87, 101
Bsp1286I	GDGCHC	2 cut(s)	18, 118
BspANI	GGCC	2 cut(s)	87, 101
BspCNI	CTCAG	1 cut(s)	94
BspFNI	CGCG	1 cut(s)	50
BspHI	TCATGA	3 cut(s)	18, 259, 271
BspLI	GGNNCC	1 cut(s)	174
BspQI	GCTCTTC	2 cut(s)	123, 258
BspT107I	GGYRCC	1 cut(s)	172
BsrFI	RCCGGY	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	101
Bst6I	CTCTTC	2 cut(s)	123, 258
BstDEI	CTNAG	2 cut(s)	66, 81
BstF5I	GGATG	1 cut(s)	259
BstFNI	CGCG	1 cut(s)	50
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 140
BstNSI	RCATGY	1 cut(s)	205
BstUI	CGCG	1 cut(s)	50
BsuRI	GGCC	2 cut(s)	87, 101
BtsCI	GGATG	1 cut(s)	259
CciI	TCATGA	3 cut(s)	18, 259, 271
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	5 cut(s)	19, 151, 202, 260, 272
CviJI	RGCY	6 cut(s)	87, 101, 116, 143, 188, 268
CviKI_1	RGCY	6 cut(s)	87, 101, 116, 143, 188, 268
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	2 cut(s)	66, 81
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	2 cut(s)	123, 258
EarI	CTCTTC	2 cut(s)	123, 258
Eco24I	GRGCYC	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	289
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRV	GATATC	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	118
FaeI	CATG	5 cut(s)	22, 154, 205, 263, 275
FatI	CATG	5 cut(s)	18, 150, 201, 259, 271
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	1 cut(s)	118
FspBI	CTAG	1 cut(s)	189
GsaI	CCCAGC	1 cut(s)	96
HaeIII	GGCC	2 cut(s)	87, 101
HapII	CCGG	2 cut(s)	102, 124
Hin1II	CATG	5 cut(s)	22, 154, 205, 263, 275
HinfI	GANTC	1 cut(s)	159
HpaII	CCGG	2 cut(s)	102, 124
HphI	GGTGA	3 cut(s)	16, 113, 116
Hpy188I	TCNGA	1 cut(s)	42
Hpy188III	TCNNGA	4 cut(s)	19, 260, 272, 280
HpyAV	CCTTC	4 cut(s)	4, 69, 154, 320
HpyCH4V	TGCA	1 cut(s)	134
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 140
HpyF3I	CTNAG	2 cut(s)	66, 81
Hsp92II	CATG	5 cut(s)	22, 154, 205, 263, 275
LguI	GCTCTTC	2 cut(s)	123, 258
LpnPI	CCDG	6 cut(s)	68, 78, 115, 137, 189, 283
MaeI	CTAG	1 cut(s)	189
MboII	GAAGA	4 cut(s)	19, 55, 110, 275
MhlI	GDGCHC	2 cut(s)	18, 118
MluCI	AATT	2 cut(s)	180, 343
MluI	ACGCGT	1 cut(s)	48
MlyI	GAGTC	1 cut(s)	168
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	2 cut(s)	120, 316
MroXI	GAANNNNTTC	1 cut(s)	267
MseI	TTAA	1 cut(s)	341
MslI	CAYNNNNRTG	2 cut(s)	23, 200
MspI	CCGG	2 cut(s)	102, 124
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	98, 140
NlaIII	CATG	5 cut(s)	22, 154, 205, 263, 275
NlaIV	GGNNCC	1 cut(s)	174
NspI	RCATGY	1 cut(s)	205
PagI	TCATGA	3 cut(s)	18, 259, 271
PciSI	GCTCTTC	2 cut(s)	123, 258
PdmI	GAANNNNTTC	1 cut(s)	267
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PspFI	CCCAGC	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	85
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	2 cut(s)	23, 200
SapI	GCTCTTC	2 cut(s)	123, 258
SaqAI	TTAA	1 cut(s)	341
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	1 cut(s)	168
SduI	GDGCHC	2 cut(s)	18, 118
SetI	ASST	3 cut(s)	15, 270, 308
SmiMI	CAYNNNNRTG	2 cut(s)	23, 200
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	2 cut(s)	180, 343
SspMI	CTAG	1 cut(s)	189
TasI	AATT	2 cut(s)	180, 343
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TspDTI	ATGAA	6 cut(s)	35, 136, 248, 260, 276, 288
XceI	RCATGY	1 cut(s)	205
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.