Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004250.1

Orthogroup ID

OG0022612

Physical Location & Seq

Genomic Coordinates Forward (+)

127624 .. 127932

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004250.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atgaagagtctccctcctccatccctgaattcatctgttgtgatacagatgtggacaatattgcatggattaagagtggccttgagcattgtgagacgacgagtagcagagaatgtagcaagccagagattctcacaagggacggctactacttcgcaaatggggtattatgaactgaatatgatgaatgggcataagcgccttgtggagggacagaacaggctaattggtatgatgacagaaatgctttcaacccagaagcgtggacaaacttttgcaatgccaactgaagttaaaggactgagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048229 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

102

Amino Acids

11.41

Weight (kDa)

10.93

Isoelectric Point (pI)

48.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022612)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0369051
rosa_multiflora	Rmu_sc0004250.1_g000027
rosa_roxburghii	Rroxscaffold_4G00288050
rosa_samantha	Rh1AG354300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	28
AcuI	CTGAAG	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	252
AluBI	AGCT	1 cut(s)	306
AluI	AGCT	1 cut(s)	306
Alw26I	GTCTC	2 cut(s)	14, 88
AoxI	GGCC	1 cut(s)	78
ApoI	RAATTY	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	201
BaeI	ACNNNNGTAYC	2 cut(s)	35, 68
BccI	CCATC	1 cut(s)	28
BceAI	ACGGC	1 cut(s)	159
BcoDI	GTCTC	2 cut(s)	14, 88
BfaI	CTAG	1 cut(s)	307
BfoI	RGCGCY	1 cut(s)	202
BplI	GAGNNNNNCTC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	285
BseGI	GGATG	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	293
BseRI	GAGGAG	1 cut(s)	6
BshFI	GGCC	1 cut(s)	80
BslFI	GGGAC	2 cut(s)	154, 225
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	2 cut(s)	14, 88
BsmBI	CGTCTC	1 cut(s)	88
BsmFI	GGGAC	2 cut(s)	154, 225
BsnI	GGCC	1 cut(s)	80
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	1 cut(s)	294
BsrDI	GCAATG	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	302
BstENI	CCTNNNNNAGG	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	20
BstH2I	RGCGCY	1 cut(s)	202
BstHHI	GCGC	1 cut(s)	201
BstMAI	GTCTC	2 cut(s)	14, 88
BstXI	CCANNNNNNTGG	1 cut(s)	263
BsuRI	GGCC	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	20
Cac8I	GCNNGC	1 cut(s)	121
CfoI	GCGC	1 cut(s)	201
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	5 cut(s)	80, 123, 146, 223, 306
CviKI_1	RGCY	5 cut(s)	80, 123, 146, 223, 306
DdeI	CTNAG	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	309
EcoNI	CCTNNNNNAGG	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	28
Esp3I	CGTCTC	1 cut(s)	88
FaeI	CATG	1 cut(s)	68
FaiI	YATR	5 cut(s)	66, 171, 182, 195, 233
FaqI	GGGAC	2 cut(s)	154, 225
FatI	CATG	1 cut(s)	64
FokI	GGATG	1 cut(s)	7
FspBI	CTAG	1 cut(s)	307
GlaI	GCGC	1 cut(s)	200
HaeII	RGCGCY	1 cut(s)	202
HaeIII	GGCC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	201
Hin1II	CATG	1 cut(s)	68
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HinfI	GANTC	2 cut(s)	7, 129
Hpy166II	GTNNAC	2 cut(s)	54, 266
Hpy8I	GTNNAC	2 cut(s)	54, 266
Hpy99I	CGWCG	1 cut(s)	102
HpyCH4V	TGCA	2 cut(s)	64, 278
HpyF3I	CTNAG	1 cut(s)	302
Hsp92II	CATG	1 cut(s)	68
HspAI	GCGC	1 cut(s)	199
LpnPI	CCDG	4 cut(s)	38, 137, 205, 269
MaeI	CTAG	1 cut(s)	307
MboII	GAAGA	1 cut(s)	16
MluCI	AATT	2 cut(s)	28, 225
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	3 cut(s)	24, 27, 202
MseI	TTAA	2 cut(s)	71, 294
NlaIII	CATG	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	129
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	71, 294
SchI	GAGTC	1 cut(s)	16
SetI	ASST	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
Sse9I	AATT	2 cut(s)	28, 225
SspI	AATATT	1 cut(s)	60
SspMI	CTAG	1 cut(s)	307
TasI	AATT	2 cut(s)	28, 225
TfiI	GAWTC	1 cut(s)	129
Tru1I	TTAA	2 cut(s)	71, 294
Tru9I	TTAA	2 cut(s)	71, 294
TspDTI	ATGAA	4 cut(s)	17, 21, 186, 200
XagI	CCTNNNNNAGG	1 cut(s)	206
XapI	RAATTY	1 cut(s)	28
XspI	CTAG	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.