Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0022612

Physical Location & Seq

Genomic Coordinates Reverse (-)

59007962 .. 59010865

Gene Structure 2904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG354300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAGCCTACGGTTCCTCTGTGTTGTGGCCACGGTTGCTGCCATCGGAACCAGGGGAGTTCTCGAAGCTCATTTTTGGGACCTGAGTTTATTGACTATGAAGAGCCTTCCTCCTTCTCCATCCCTGAATTCATCTGTTGTGCTACAGATGTGGACAATATTGCATGGATTAAGAGTGGCCTTGAGAATTGTGAGACGACGAGTAGCAGAGAATGTAGCAAGCCAGAGATTCTCACAAGGGACGGCTACTACTTCGCAAATGGGGTATTATGAACTGAATATGATGAATGGGCATAAGCGCCTTGTGGAGGGACAGAACAGGCTAATTGGTATGATGACAGAAATGCTTTCAACCCAGAAGCGTGGACAAACTTTTGCAGTGCCAACTGAAGTTAAAGGACTGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048229 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

135

Amino Acids

15.01

Weight (kDa)

10.86

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022612)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0369051
rosa_multiflora	Rmu_sc0004250.1_g000027
rosa_roxburghii	Rroxscaffold_4G00288050
rosa_samantha	Rh1AG354300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	127
AcuI	CTGAAG	1 cut(s)	408
AfiI	CCNNNNNNNGG	1 cut(s)	307
AgsI	TTSAA	1 cut(s)	351
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	2 cut(s)	68, 405
AluI	AGCT	2 cut(s)	68, 405
Alw26I	GTCTC	1 cut(s)	187
AoxI	GGCC	2 cut(s)	27, 177
ApeKI	GCWGC	1 cut(s)	38
ApoI	RAATTY	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	79
BalI	TGGCCA	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	2 cut(s)	50, 127
BceAI	ACGGC	1 cut(s)	258
BciT130I	CCWGG	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	1 cut(s)	406
BfmI	CTRYAG	1 cut(s)	143
BfoI	RGCGCY	1 cut(s)	301
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
Bme1390I	CCNGG	1 cut(s)	52
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	3 cut(s)	14, 49, 80
BmrFI	CCNGG	1 cut(s)	52
BplI	GAGNNNNNCTC	2 cut(s)	94, 126
BpuEI	CTTGAG	1 cut(s)	202
BsaJI	CCNNGG	2 cut(s)	30, 51
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	2 cut(s)	30, 51
BseGI	GGATG	1 cut(s)	119
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMII	CTCAG	2 cut(s)	74, 392
BseXI	GCAGC	1 cut(s)	25
BshFI	GGCC	2 cut(s)	29, 179
BslFI	GGGAC	3 cut(s)	92, 253, 324
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmAI	GTCTC	1 cut(s)	187
BsmBI	CGTCTC	1 cut(s)	187
BsmFI	GGGAC	3 cut(s)	92, 253, 324
BsnI	GGCC	2 cut(s)	29, 179
BspANI	GGCC	2 cut(s)	29, 179
BspCNI	CTCAG	2 cut(s)	75, 393
BspLI	GGNNCC	3 cut(s)	14, 49, 80
BspQI	GCTCTTC	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	30, 51
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	2 cut(s)	12, 34
Bst6I	CTCTTC	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	2 cut(s)	83, 401
BstDSI	CCRYGG	1 cut(s)	30
BstENI	CCTNNNNNAGG	1 cut(s)	305
BstF5I	GGATG	1 cut(s)	119
BstH2I	RGCGCY	1 cut(s)	301
BstHHI	GCGC	1 cut(s)	300
BstMAI	GTCTC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	50
BstSFI	CTRYAG	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	25
BstXI	CCANNNNNNTGG	1 cut(s)	362
BsuRI	GGCC	2 cut(s)	29, 179
BtgI	CCRYGG	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	119
BtsI	GCAGTG	1 cut(s)	384
BtsIMutI	CAGTG	1 cut(s)	384
Cac8I	GCNNGC	1 cut(s)	220
CfoI	GCGC	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	79
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	9 cut(s)	6, 29, 68, 105, 179, 222, 245, 322, 405
CviKI_1	RGCY	9 cut(s)	6, 29, 68, 105, 179, 222, 245, 322, 405
DdeI	CTNAG	2 cut(s)	83, 401
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	408
EcoNI	CCTNNNNNAGG	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	79
EcoRI	GAATTC	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	50
Esp3I	CGTCTC	1 cut(s)	187
FaeI	CATG	1 cut(s)	167
FaiI	YATR	6 cut(s)	98, 165, 270, 281, 294, 332
FaqI	GGGAC	3 cut(s)	92, 253, 324
FatI	CATG	1 cut(s)	163
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	1 cut(s)	106
Fsp4HI	GCNGC	1 cut(s)	39
FspBI	CTAG	1 cut(s)	406
GlaI	GCGC	1 cut(s)	299
GluI	GCNGC	1 cut(s)	39
HaeII	RGCGCY	1 cut(s)	301
HaeIII	GGCC	2 cut(s)	29, 179
HhaI	GCGC	1 cut(s)	300
Hin1II	CATG	1 cut(s)	167
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HinfI	GANTC	1 cut(s)	228
Hpy166II	GTNNAC	2 cut(s)	153, 365
Hpy188I	TCNGA	1 cut(s)	47
Hpy188III	TCNNGA	1 cut(s)	62
Hpy8I	GTNNAC	2 cut(s)	153, 365
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	2 cut(s)	116, 123
HpyCH4III	ACNGT	2 cut(s)	12, 34
HpyCH4V	TGCA	2 cut(s)	163, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	2 cut(s)	83, 401
Hsp92II	CATG	1 cut(s)	167
HspAI	GCGC	1 cut(s)	298
LguI	GCTCTTC	1 cut(s)	95
LpnPI	CCDG	7 cut(s)	37, 64, 95, 137, 236, 304, 368
Lsp1109I	GCAGC	1 cut(s)	25
MaeI	CTAG	1 cut(s)	406
MboII	GAAGA	1 cut(s)	112
MlsI	TGGCCA	1 cut(s)	29
MluCI	AATT	3 cut(s)	127, 186, 324
MluNI	TGGCCA	1 cut(s)	29
MnlI	CCTC	3 cut(s)	26, 120, 301
Mox20I	TGGCCA	1 cut(s)	29
MscI	TGGCCA	1 cut(s)	29
MseI	TTAA	2 cut(s)	170, 393
Msp20I	TGGCCA	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	52
MvaI	CCWGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	1 cut(s)	35
NlaIII	CATG	1 cut(s)	167
NlaIV	GGNNCC	3 cut(s)	14, 49, 80
PciSI	GCTCTTC	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	228
PkrI	GCNGC	1 cut(s)	40
PpuMI	RGGWCCY	1 cut(s)	79
Psp5II	RGGWCCY	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	3 cut(s)	14, 49, 80
PspPI	GGNCC	1 cut(s)	79
PspPPI	RGGWCCY	1 cut(s)	79
SapI	GCTCTTC	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	170, 393
SatI	GCNGC	1 cut(s)	39
Sau96I	GGNCC	1 cut(s)	79
ScrFI	CCNGG	1 cut(s)	52
SetI	ASST	3 cut(s)	70, 84, 407
SfcI	CTRYAG	1 cut(s)	143
SinI	GGWCC	1 cut(s)	79
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
Sse9I	AATT	3 cut(s)	127, 186, 324
SspI	AATATT	1 cut(s)	159
SspMI	CTAG	1 cut(s)	406
StyD4I	CCNGG	1 cut(s)	50
TaaI	ACNGT	2 cut(s)	12, 34
TaqI	TCGA	1 cut(s)	63
TasI	AATT	3 cut(s)	127, 186, 324
TfiI	GAWTC	1 cut(s)	228
Tru1I	TTAA	2 cut(s)	170, 393
Tru9I	TTAA	2 cut(s)	170, 393
TscAI	CASTG	1 cut(s)	384
TseI	GCWGC	1 cut(s)	38
TspDTI	ATGAA	4 cut(s)	113, 120, 285, 299
TspRI	CASTG	1 cut(s)	384
VpaK11BI	GGWCC	1 cut(s)	79
XagI	CCTNNNNNAGG	1 cut(s)	305
XapI	RAATTY	1 cut(s)	127
XspI	CTAG	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.