Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004340.1

Orthogroup ID

OG0021667

Physical Location & Seq

Genomic Coordinates Forward (+)

29561 .. 30016

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgaatcccagcacgaacccacaaccaccaccaaacccgccgcagtcccactaccctctacctcctgcgactgcctcccgaaggagaatttcctgcatatgcccatcatgcctctgcgaacgactcgccgttttgcacccttcaaccacctctacttcctccttgtccagaaaactactgacttcctcccccgtcgtcgttgcctttaaggccatttttatactcaggaccggagaaacttctccgatcgagggcaggagaagtccaggggttgaagtcattggagaaggagacagaccaggatcgatgggagagagaggaggagagggcctcattggcggaggaggtgagagcggtgttaggcttgagcgaggcggagacacatgtgggagcaaatttaagggtagtggtttaggcggagaggcggtgagacttgagaagagggagaaacagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009965 GO:0010016 GO:0010051 GO:0010087 GO:0010088 GO:0010154 GO:0010232 GO:0010233 GO:0010588 GO:0016020 GO:0016324 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0044425 GO:0044459 GO:0044464 GO:0045177 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0051179 GO:0051234 GO:0061458 GO:0071944 GO:0090698 GO:0098590 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF740

Protein Analysis

151

Amino Acids

15.79

Weight (kDa)

9.4

Isoelectric Point (pI)

73.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF740	PF05340	28 - 74	4.6e-07	Protein of unknown function (DUF740)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0021667)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004340.1_g000008 Rmu_sc0016065.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366770
rosa_samantha	Rh1AG050700 Rh7BG077800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	354
AciI	CCGC	7 cut(s)	38, 41, 339, 354, 375, 417, 425
AclWI	GGATC	1 cut(s)	310
AcsI	RAATTY	2 cut(s)	87, 395
AfiI	CCNNNNNNNGG	2 cut(s)	81, 251
AflIII	ACRYGT	1 cut(s)	383
AgsI	TTSAA	2 cut(s)	144, 275
AjnI	CCWGG	2 cut(s)	265, 298
Alw26I	GTCTC	3 cut(s)	285, 372, 424
AlwI	GGATC	1 cut(s)	310
AoxI	GGCC	2 cut(s)	210, 328
ApoI	RAATTY	2 cut(s)	87, 395
AspS9I	GGNCC	2 cut(s)	228, 328
AsuHPI	GGTGA	2 cut(s)	359, 439
AvaII	GGWCC	1 cut(s)	228
BccI	CCATC	2 cut(s)	112, 301
BceAI	ACGGC	1 cut(s)	113
BciT130I	CCWGG	2 cut(s)	267, 300
BcoDI	GTCTC	3 cut(s)	285, 372, 424
BglI	GCCNNNNNGGC	2 cut(s)	209, 336
BisI	GCNGC	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	42
Bme1390I	CCNGG	2 cut(s)	267, 300
Bme18I	GGWCC	1 cut(s)	228
BmgT120I	GGNCC	2 cut(s)	228, 328
BmrFI	CCNGG	2 cut(s)	267, 300
BplI	GAGNNNNNCTC	2 cut(s)	315, 347
BpuEI	CTTGAG	2 cut(s)	386, 455
Bsa29I	ATCGAT	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	266
BsaWI	WCCGGW	1 cut(s)	230
BsaXI	ACNNNNNCTCC	3 cut(s)	411, 437, 441
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 251
BseBI	CCWGG	2 cut(s)	267, 300
BseCI	ATCGAT	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	266
BseLI	CCNNNNNNNGG	2 cut(s)	81, 251
BseMII	CTCAG	1 cut(s)	238
BseRI	GAGGAG	3 cut(s)	333, 336, 357
BseYI	CCCAGC	1 cut(s)	8
Bsh1285I	CGRYCG	1 cut(s)	249
BshFI	GGCC	2 cut(s)	212, 330
BshVI	ATCGAT	1 cut(s)	305
BsiEI	CGRYCG	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	2 cut(s)	81, 251
BsmAI	GTCTC	3 cut(s)	285, 372, 424
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	2 cut(s)	212, 330
Bsp143I	GATC	2 cut(s)	246, 302
BspACI	CCGC	7 cut(s)	38, 41, 339, 354, 375, 417, 425
BspANI	GGCC	2 cut(s)	212, 330
BspCNI	CTCAG	1 cut(s)	237
BspDI	ATCGAT	1 cut(s)	305
BspPI	GGATC	1 cut(s)	310
BsrBI	CCGCTC	1 cut(s)	354
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	2 cut(s)	246, 302
Bst2UI	CCWGG	2 cut(s)	267, 300
Bst4CI	ACNGT	1 cut(s)	453
Bst6I	CTCTTC	1 cut(s)	434
BstDEI	CTNAG	1 cut(s)	224
BstENI	CCTNNNNNAGG	1 cut(s)	79
BstKTI	GATC	2 cut(s)	249, 305
BstMAI	GTCTC	3 cut(s)	285, 372, 424
BstMBI	GATC	2 cut(s)	246, 302
BstMCI	CGRYCG	1 cut(s)	249
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 209, 336
BstNI	CCWGG	2 cut(s)	267, 300
BstNSI	RCATGY	1 cut(s)	387
BstSCI	CCNGG	2 cut(s)	265, 298
Bsu15I	ATCGAT	1 cut(s)	305
BsuRI	GGCC	2 cut(s)	212, 330
BsuTUI	ATCGAT	1 cut(s)	305
Cfr13I	GGNCC	2 cut(s)	228, 328
ClaI	ATCGAT	1 cut(s)	305
CviAII	CATG	2 cut(s)	108, 384
CviJI	RGCY	3 cut(s)	212, 330, 364
CviKI_1	RGCY	3 cut(s)	212, 330, 364
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	2 cut(s)	248, 304
DpnII	GATC	2 cut(s)	246, 302
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
EciI	GGCGGA	3 cut(s)	354, 390, 432
Eco47I	GGWCC	1 cut(s)	228
EcoNI	CCTNNNNNAGG	1 cut(s)	79
EcoO109I	RGGNCCY	1 cut(s)	328
EcoRII	CCWGG	2 cut(s)	265, 298
FaeI	CATG	2 cut(s)	111, 387
FaiI	YATR	5 cut(s)	98, 100, 109, 221, 385
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	2 cut(s)	107, 383
FauI	CCCGC	1 cut(s)	45
FauNDI	CATATG	1 cut(s)	98
Fnu4HI	GCNGC	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	41
GluI	GCNGC	1 cut(s)	41
GsaI	CCCAGC	1 cut(s)	12
HaeIII	GGCC	2 cut(s)	212, 330
HapII	CCGG	1 cut(s)	231
Hin1II	CATG	2 cut(s)	111, 387
HinfI	GANTC	2 cut(s)	4, 123
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	2 cut(s)	359, 439
Hpy188I	TCNGA	1 cut(s)	246
Hpy188III	TCNNGA	3 cut(s)	78, 168, 226
Hpy99I	CGWCG	2 cut(s)	197, 200
HpyAV	CCTTC	3 cut(s)	75, 150, 281
HpyCH4III	ACNGT	1 cut(s)	453
HpyCH4V	TGCA	2 cut(s)	96, 136
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 209, 336
HpyF3I	CTNAG	1 cut(s)	224
Hsp92II	CATG	2 cut(s)	111, 387
Kzo9I	GATC	2 cut(s)	246, 302
LmnI	GCTCC	1 cut(s)	390
MalI	GATC	2 cut(s)	248, 304
MbiI	CCGCTC	1 cut(s)	354
MboI	GATC	2 cut(s)	246, 302
MboII	GAAGA	1 cut(s)	451
MluCI	AATT	2 cut(s)	87, 395
MlyI	GAGTC	1 cut(s)	117
MseI	TTAA	2 cut(s)	207, 399
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	2 cut(s)	267, 300
MvaI	CCWGG	2 cut(s)	267, 300
MwoI	GCNNNNNNNGC	3 cut(s)	108, 209, 336
NdeI	CATATG	1 cut(s)	98
NdeII	GATC	2 cut(s)	246, 302
NlaIII	CATG	2 cut(s)	111, 387
NspI	RCATGY	1 cut(s)	387
PciI	ACATGT	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	42
Ple19I	CGATCG	1 cut(s)	249
PleI	GAGTC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	117
PscI	ACATGT	1 cut(s)	383
Psp6I	CCWGG	2 cut(s)	265, 298
PspFI	CCCAGC	1 cut(s)	8
PspGI	CCWGG	2 cut(s)	265, 298
PspPI	GGNCC	2 cut(s)	228, 328
PvuI	CGATCG	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	207, 399
SatI	GCNGC	1 cut(s)	41
Sau3AI	GATC	2 cut(s)	246, 302
Sau96I	GGNCC	2 cut(s)	228, 328
SchI	GAGTC	1 cut(s)	117
ScrFI	CCNGG	2 cut(s)	267, 300
SetI	ASST	3 cut(s)	64, 152, 349
SinI	GGWCC	1 cut(s)	228
SmlI	CTYRAG	2 cut(s)	365, 434
SmoI	CTYRAG	2 cut(s)	365, 434
Sse9I	AATT	2 cut(s)	87, 395
SsiI	CCGC	7 cut(s)	38, 41, 339, 354, 375, 417, 425
StyD4I	CCNGG	2 cut(s)	265, 298
TaaI	ACNGT	1 cut(s)	453
TaqI	TCGA	2 cut(s)	249, 305
TasI	AATT	2 cut(s)	87, 395
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	207, 399
Tru9I	TTAA	2 cut(s)	207, 399
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	228
XagI	CCTNNNNNAGG	1 cut(s)	79
XapI	RAATTY	2 cut(s)	87, 395
XceI	RCATGY	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.