Rmu_sc0016065.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016065.1
OG0021667
Physical Location & Seq
Forward (+)
651 .. 1564
914 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016065.1_g000001.1.cds

Sequence Viewer

Length: 867 bp
atggttcgcaacttcacatcagctgtccttaactcctcattctccactcttgtcctcttcttcttctcctcctttattgcactctcttcatcctcctcctcatcatttacaatggccaccatagctcgcactctgcaccatctcatagtggaggccatcgacggctgcatcaaacagcttttcaatcctccttcgtcaatcccgagaatccggccaccacgccctcttatatcgcctcctcaaccgcatccaaactccaatgccaacatcactatcttcatcccagaaggaaaacaacatgagattgtcgccgcccaattccttcatcgacaactctctacactacctcaacgctgtcagttcccactccaccaagctcgaatcaaatcgaccgtcgattccctcaacccagaaagcaattcggcccgaccgccggttatgaatcccagcacgaacccacaaccaccaccaaacccgccgcagtcccactaccctctacctcctgcgactgcctcccgaaggagaatttcaggcatatgcccgtcatgcctctgcgaacgactcgccgttttgcacccttcaaccacctctacttcctccttgtccagaaaactattgacttcctccctcgtcgtcgctgcttttaaggccatttttatacctaggaccggagaaacttctccgattgagggccagagaagtccagggcttgaagtcattggagaaggagatagaccaggatcgacgggagagagaggtggaaagggcgtcattggcggaggaggtgagagcggtgttaggcttgagcgaggcggagacacgtgtgggagcaaatttgagggtagtggttgggcggagaggcggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

30.89

Weight (kDa)

10.05

Isoelectric Point (pI)

56.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021667)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004340.1_g000008 Rmu_sc0016065.1_g000001
rosa_roxburghii Rroxscaffold_5G00366770
rosa_samantha Rh1AG050700 Rh7BG077800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 792
AclWI GGATC 1 cut(s) 748
AcoI YGGCCR 2 cut(s) 114, 212
AcsI RAATTY 2 cut(s) 525, 833
AcvI CACGTG 1 cut(s) 822
AcyI GRCGYC 1 cut(s) 768
AfiI CCNNNNNNNGG 4 cut(s) 433, 519, 668, 689
AflIII ACRYGT 2 cut(s) 819, 821
AgsI TTSAA 3 cut(s) 184, 582, 713
AjnI CCWGG 2 cut(s) 703, 736
AluBI AGCT 4 cut(s) 23, 125, 178, 377
AluI AGCT 4 cut(s) 23, 125, 178, 377
Alw26I GTCTC 1 cut(s) 810
AlwI GGATC 1 cut(s) 748
Ama87I CYCGRG 1 cut(s) 202
AoxI GGCC 6 cut(s) 114, 153, 212, 423, 648, 691
ApeKI GCWGC 2 cut(s) 165, 638
ApoI RAATTY 2 cut(s) 525, 833
ArsI GACNNNNNNTTYG 2 cut(s) 378, 410
AspA2I CCTAGG 1 cut(s) 662
AspS9I GGNCC 3 cut(s) 424, 666, 691
AsuHPI GGTGA 1 cut(s) 797
AvaI CYCGRG 1 cut(s) 202
AvaII GGWCC 1 cut(s) 666
AvrII CCTAGG 1 cut(s) 662
BalI TGGCCA 1 cut(s) 116
BbrPI CACGTG 1 cut(s) 822
BbvI GCAGC 2 cut(s) 152, 625
BccI CCATC 2 cut(s) 147, 164
BceAI ACGGC 2 cut(s) 178, 551
BciT130I CCWGG 2 cut(s) 705, 738
BcoDI GTCTC 1 cut(s) 810
BfaI CTAG 1 cut(s) 663
BisI GCNGC 4 cut(s) 166, 312, 479, 639
BlnI CCTAGG 1 cut(s) 662
BlsI GCNGC 4 cut(s) 167, 313, 480, 640
Bme1390I CCNGG 2 cut(s) 705, 738
Bme18I GGWCC 1 cut(s) 666
BmeT110I CYCGRG 1 cut(s) 202
BmgT120I GGNCC 3 cut(s) 424, 666, 691
BmrFI CCNGG 2 cut(s) 705, 738
BmsI GCATC 2 cut(s) 177, 256
BpuEI CTTGAG 1 cut(s) 824
BsaAI YACGTR 1 cut(s) 822
BsaHI GRCGYC 1 cut(s) 768
BsaJI CCNNGG 2 cut(s) 662, 704
BsaWI WCCGGW 1 cut(s) 668
BsaXI ACNNNNNCTCC 1 cut(s) 848
Bsc4I CCNNNNNNNGG 4 cut(s) 433, 519, 668, 689
Bse118I RCCGGY 1 cut(s) 433
BseBI CCWGG 2 cut(s) 705, 738
BseDI CCNNGG 2 cut(s) 662, 704
BseGI GGATG 3 cut(s) 89, 247, 279
BseLI CCNNNNNNNGG 4 cut(s) 433, 519, 668, 689
BseRI GAGGAG 6 cut(s) 25, 58, 85, 88, 228, 795
BseXI GCAGC 2 cut(s) 152, 625
BseYI CCCAGC 1 cut(s) 446
BsgI GTGCAG 1 cut(s) 119
Bsh1285I CGRYCG 2 cut(s) 393, 431
BshFI GGCC 6 cut(s) 116, 155, 214, 425, 650, 693
BsiEI CGRYCG 2 cut(s) 393, 431
BsiHKCI CYCGRG 1 cut(s) 202
BsiSI CCGG 3 cut(s) 211, 434, 669
BslFI GGGAC 1 cut(s) 469
BslI CCNNNNNNNGG 4 cut(s) 433, 519, 668, 689
BsmAI GTCTC 1 cut(s) 810
BsmFI GGGAC 1 cut(s) 469
BsnI GGCC 6 cut(s) 116, 155, 214, 425, 650, 693
BsoBI CYCGRG 1 cut(s) 202
Bsp143I GATC 1 cut(s) 740
BspANI GGCC 6 cut(s) 116, 155, 214, 425, 650, 693
BspPI GGATC 1 cut(s) 748
BsrBI CCGCTC 1 cut(s) 792
BsrFI RCCGGY 1 cut(s) 433
BssAI RCCGGY 1 cut(s) 433
BssECI CCNNGG 2 cut(s) 662, 704
BssMI GATC 1 cut(s) 740
BssNI GRCGYC 1 cut(s) 768
BssT1I CCWWGG 1 cut(s) 662
Bst2UI CCWGG 2 cut(s) 705, 738
Bst4CI ACNGT 1 cut(s) 394
Bst6I CTCTTC 2 cut(s) 62, 91
BstACI GRCGYC 1 cut(s) 768
BstBAI YACGTR 1 cut(s) 822
BstC8I GCNNGC 1 cut(s) 127
BstENI CCTNNNNNAGG 1 cut(s) 517
BstF5I GGATG 3 cut(s) 89, 247, 279
BstKTI GATC 1 cut(s) 743
BstMAI GTCTC 1 cut(s) 810
BstMBI GATC 1 cut(s) 740
BstMCI CGRYCG 2 cut(s) 393, 431
BstMWI GCNNNNNNNGC 4 cut(s) 122, 546, 647, 774
BstNI CCWGG 2 cut(s) 705, 738
BstSCI CCNGG 2 cut(s) 703, 736
BstV1I GCAGC 2 cut(s) 152, 625
BsuRI GGCC 6 cut(s) 116, 155, 214, 425, 650, 693
BtsCI GGATG 3 cut(s) 89, 247, 279
Cac8I GCNNGC 1 cut(s) 127
Cfr10I RCCGGY 1 cut(s) 433
Cfr13I GGNCC 3 cut(s) 424, 666, 691
CseI GACGC 1 cut(s) 757
CviAII CATG 2 cut(s) 299, 546
DpnI GATC 1 cut(s) 742
DpnII GATC 1 cut(s) 740
EaeI YGGCCR 2 cut(s) 114, 212
Eam1104I CTCTTC 2 cut(s) 62, 91
EarI CTCTTC 2 cut(s) 62, 91
EciI GGCGGA 2 cut(s) 792, 828
Eco130I CCWWGG 1 cut(s) 662
Eco47I GGWCC 1 cut(s) 666
Eco72I CACGTG 1 cut(s) 822
Eco88I CYCGRG 1 cut(s) 202
EcoNI CCTNNNNNAGG 1 cut(s) 517
EcoRII CCWGG 2 cut(s) 703, 736
EcoT14I CCWWGG 1 cut(s) 662
ErhI CCWWGG 1 cut(s) 662
FaeI CATG 2 cut(s) 302, 549
FaiI YATR 9 cut(s) 122, 146, 230, 300, 440, 536, 538, 547, 659
FaqI GGGAC 1 cut(s) 469
FatI CATG 2 cut(s) 298, 545
FauI CCCGC 1 cut(s) 483
FauNDI CATATG 1 cut(s) 536
Fnu4HI GCNGC 4 cut(s) 166, 312, 479, 639
FokI GGATG 3 cut(s) 76, 234, 266
Fsp4HI GCNGC 4 cut(s) 166, 312, 479, 639
FspBI CTAG 1 cut(s) 663
GluI GCNGC 4 cut(s) 166, 312, 479, 639
GsaI CCCAGC 1 cut(s) 450
HaeIII GGCC 6 cut(s) 116, 155, 214, 425, 650, 693
HapII CCGG 3 cut(s) 211, 434, 669
HgaI GACGC 1 cut(s) 757
Hin1I GRCGYC 1 cut(s) 768
Hin1II CATG 2 cut(s) 302, 549
HinfI GANTC 5 cut(s) 207, 381, 398, 442, 561
HpaII CCGG 3 cut(s) 211, 434, 669
HphI GGTGA 1 cut(s) 797
Hpy188I TCNGA 1 cut(s) 684
Hpy188III TCNNGA 3 cut(s) 202, 516, 606
Hpy99I CGWCG 5 cut(s) 164, 398, 635, 638, 748
HpyAV CCTTC 6 cut(s) 201, 281, 332, 513, 588, 719
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4IV ACGT 1 cut(s) 821
HpyCH4V TGCA 4 cut(s) 80, 136, 168, 574
HpyF10VI GCNNNNNNNGC 4 cut(s) 122, 546, 647, 774
HpySE526I ACGT 1 cut(s) 821
Hsp92I GRCGYC 1 cut(s) 768
Hsp92II CATG 2 cut(s) 302, 549
Kzo9I GATC 1 cut(s) 740
LmnI GCTCC 1 cut(s) 828
Lsp1109I GCAGC 2 cut(s) 152, 625
LweI GCATC 2 cut(s) 177, 256
MaeI CTAG 1 cut(s) 663
MaeII ACGT 1 cut(s) 821
MalI GATC 1 cut(s) 742
MbiI CCGCTC 1 cut(s) 792
MboI GATC 1 cut(s) 740
MboII GAAGA 5 cut(s) 49, 52, 55, 78, 268
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 4 cut(s) 317, 418, 525, 833
MluNI TGGCCA 1 cut(s) 116
MlyI GAGTC 1 cut(s) 555
Mox20I TGGCCA 1 cut(s) 116
MscI TGGCCA 1 cut(s) 116
MseI TTAA 2 cut(s) 30, 645
Msp20I TGGCCA 1 cut(s) 116
MspA1I CMGCKG 1 cut(s) 23
MspI CCGG 3 cut(s) 211, 434, 669
MspR9I CCNGG 2 cut(s) 705, 738
MvaI CCWGG 2 cut(s) 705, 738
MwoI GCNNNNNNNGC 4 cut(s) 122, 546, 647, 774
NdeI CATATG 1 cut(s) 536
NdeII GATC 1 cut(s) 740
NlaIII CATG 2 cut(s) 302, 549
PcsI WCGNNNNNNNCGW 1 cut(s) 200
PfeI GAWTC 4 cut(s) 207, 381, 398, 442
PkrI GCNGC 4 cut(s) 167, 313, 480, 640
PleI GAGTC 1 cut(s) 555
PmaCI CACGTG 1 cut(s) 822
PmlI CACGTG 1 cut(s) 822
PpsI GAGTC 1 cut(s) 555
Ppu21I YACGTR 1 cut(s) 822
Psp6I CCWGG 2 cut(s) 703, 736
PspCI CACGTG 1 cut(s) 822
PspFI CCCAGC 1 cut(s) 446
PspGI CCWGG 2 cut(s) 703, 736
PspPI GGNCC 3 cut(s) 424, 666, 691
PvuII CAGCTG 1 cut(s) 23
SaqAI TTAA 2 cut(s) 30, 645
SatI GCNGC 4 cut(s) 166, 312, 479, 639
Sau3AI GATC 1 cut(s) 740
Sau96I GGNCC 3 cut(s) 424, 666, 691
SchI GAGTC 1 cut(s) 555
ScrFI CCNGG 2 cut(s) 705, 738
SfaNI GCATC 2 cut(s) 177, 256
SinI GGWCC 1 cut(s) 666
SmlI CTYRAG 1 cut(s) 803
SmoI CTYRAG 1 cut(s) 803
Sse9I AATT 4 cut(s) 317, 418, 525, 833
SspMI CTAG 1 cut(s) 663
StyD4I CCNGG 2 cut(s) 703, 736
StyI CCWWGG 1 cut(s) 662
TaaI ACNGT 1 cut(s) 394
TaiI ACGT 1 cut(s) 824
TaqI TCGA 6 cut(s) 159, 328, 379, 389, 396, 743
TasI AATT 4 cut(s) 317, 418, 525, 833
TauI GCSGC 2 cut(s) 314, 481
TfiI GAWTC 4 cut(s) 207, 381, 398, 442
Tru1I TTAA 2 cut(s) 30, 645
Tru9I TTAA 2 cut(s) 30, 645
TseI GCWGC 2 cut(s) 165, 638
TspDTI ATGAA 4 cut(s) 78, 268, 314, 455
VpaK11BI GGWCC 1 cut(s) 666
XagI CCTNNNNNAGG 1 cut(s) 517
XapI RAATTY 2 cut(s) 525, 833
XmaJI CCTAGG 1 cut(s) 662
XspI CTAG 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.