Rroxscaffold_5G00366770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0021667
Physical Location & Seq
Reverse (-)
48699003 .. 48699974
972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00366770.1

Sequence Viewer

Length: 561 bp
ATGAGTGGCTCAAACAAACCCGACAAGTGGGCCCACATGAAGGGTCCCACCGCCCTCTACCTCTGCGACCGCCACCCGAAGGAGAATTTCAAACACGTCGGTCATGCCTGCGTGAACGACTCGCCGTTTTGCACCCTTCAACCACCTCTGCTTCCTCCTTGTCCGGAAAACCACCGACTTCCTCCACCGTCGTCGCCGCAATTAAGGCCATTTTTAGACCTAGGGCGGGAGAAACTACTCCGATCGAGGGCGGGAGAAGTCCGGGGCTTGAAGTCATTGGAGGAGGAGACGGACCGAGATCGGCCGAAGAGAGAGGCGGAGAGGGCATCATTTATGGAGGAGGTGAGAGCGGCGTCGAGGCTTGAGCGAGGCGGAGACACGTGTGGGAGCGAATATGAGGGTGGAGGTTTGGGCGGAGAGGCGGTGAGACACGAGGAGACGGAGAGATGGCGAGAGAGTGAAGGCGGCGGTTGCATTTTCGAGGCTCGGACCTTGAGATCTCGGCGCCGGAGAGAGAGTGAGAGTGAGAAAGAGAGAGAAGAGCCTCGAAGAGTCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

21.24

Weight (kDa)

8.24

Isoelectric Point (pI)

83.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021667)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004340.1_g000008 Rmu_sc0016065.1_g000001
rosa_roxburghii Rroxscaffold_5G00366770
rosa_samantha Rh1AG050700 Rh7BG077800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 504
AccBSI CCGCTC 1 cut(s) 350
AccIII TCCGGA 1 cut(s) 163
AcoI YGGCCR 1 cut(s) 302
AcsI RAATTY 1 cut(s) 85
AcvI CACGTG 1 cut(s) 381
AcyI GRCGYC 2 cut(s) 353, 505
AfiI CCNNNNNNNGG 5 cut(s) 27, 40, 79, 226, 247
AflIII ACRYGT 3 cut(s) 94, 378, 380
AgsI TTSAA 3 cut(s) 91, 140, 271
AjiI CACGTC 1 cut(s) 97
Alw26I GTCTC 4 cut(s) 281, 369, 421, 431
Aor13HI TCCGGA 1 cut(s) 163
AoxI GGCC 3 cut(s) 30, 206, 302
ApaI GGGCCC 1 cut(s) 34
ApoI RAATTY 1 cut(s) 85
AspA2I CCTAGG 1 cut(s) 220
AspLEI GCGC 1 cut(s) 507
AspS9I GGNCC 5 cut(s) 30, 31, 44, 292, 489
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 2 cut(s) 355, 436
AvaII GGWCC 3 cut(s) 44, 292, 489
AvrII CCTAGG 1 cut(s) 220
BaeGI GKGCMC 1 cut(s) 34
BanI GGYRCC 1 cut(s) 504
BanII GRGCYC 1 cut(s) 34
BauI CACGAG 1 cut(s) 431
BbrPI CACGTG 1 cut(s) 381
BccI CCATC 1 cut(s) 441
BceAI ACGGC 1 cut(s) 109
BcnI CCSGG 1 cut(s) 263
BcoDI GTCTC 4 cut(s) 281, 369, 421, 431
BfaI CTAG 1 cut(s) 221
BfoI RGCGCY 1 cut(s) 508
BglII AGATCT 1 cut(s) 497
BisI GCNGC 3 cut(s) 197, 351, 466
BlnI CCTAGG 1 cut(s) 220
BlsI GCNGC 3 cut(s) 198, 352, 467
Bme1390I CCNGG 1 cut(s) 263
Bme18I GGWCC 3 cut(s) 44, 292, 489
BmgBI CACGTC 1 cut(s) 97
BmgT120I GGNCC 5 cut(s) 30, 31, 44, 292, 489
BmiI GGNNCC 4 cut(s) 32, 45, 46, 506
BmrFI CCNGG 1 cut(s) 263
BmsI GCATC 1 cut(s) 335
BpuEI CTTGAG 2 cut(s) 383, 514
BpuMI CCSGG 1 cut(s) 263
BsaAI YACGTR 1 cut(s) 381
BsaHI GRCGYC 2 cut(s) 353, 505
BsaJI CCNNGG 2 cut(s) 220, 262
BsaWI WCCGGW 1 cut(s) 163
BsaXI ACNNNNNCTCC 4 cut(s) 408, 438, 502, 532
Bsc4I CCNNNNNNNGG 5 cut(s) 27, 40, 79, 226, 247
BseAI TCCGGA 1 cut(s) 163
BseDI CCNNGG 2 cut(s) 220, 262
BseLI CCNNNNNNNGG 5 cut(s) 27, 40, 79, 226, 247
BseRI GAGGAG 4 cut(s) 296, 299, 353, 449
BseSI GKGCMC 1 cut(s) 34
BseX3I CGGCCG 1 cut(s) 302
Bsh1285I CGRYCG 3 cut(s) 70, 245, 305
BshFI GGCC 3 cut(s) 32, 208, 304
BshNI GGYRCC 1 cut(s) 504
BsiEI CGRYCG 3 cut(s) 70, 245, 305
BsiSI CCGG 3 cut(s) 164, 262, 508
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 5 cut(s) 27, 40, 79, 226, 247
BsmAI GTCTC 4 cut(s) 281, 369, 421, 431
BsmBI CGTCTC 2 cut(s) 281, 431
BsmFI GGGAC 1 cut(s) 30
BsnI GGCC 3 cut(s) 32, 208, 304
Bsp120I GGGCCC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 34
Bsp13I TCCGGA 1 cut(s) 163
Bsp143I GATC 3 cut(s) 242, 298, 497
BspANI GGCC 3 cut(s) 32, 208, 304
BspEI TCCGGA 1 cut(s) 163
BspLI GGNNCC 4 cut(s) 32, 45, 46, 506
BspQI GCTCTTC 1 cut(s) 534
BspT107I GGYRCC 1 cut(s) 504
BsrBI CCGCTC 1 cut(s) 350
BssECI CCNNGG 2 cut(s) 220, 262
BssMI GATC 3 cut(s) 242, 298, 497
BssNI GRCGYC 2 cut(s) 353, 505
BssSI CACGAG 1 cut(s) 431
BssT1I CCWWGG 1 cut(s) 220
Bst2BI CACGAG 1 cut(s) 431
Bst4CI ACNGT 1 cut(s) 189
Bst6I CTCTTC 3 cut(s) 302, 534, 544
BstACI GRCGYC 2 cut(s) 353, 505
BstBAI YACGTR 1 cut(s) 381
BstC8I GCNNGC 1 cut(s) 109
BstH2I RGCGCY 1 cut(s) 508
BstHHI GCGC 1 cut(s) 507
BstKTI GATC 3 cut(s) 245, 301, 500
BstMAI GTCTC 4 cut(s) 281, 369, 421, 431
BstMBI GATC 3 cut(s) 242, 298, 497
BstMCI CGRYCG 3 cut(s) 70, 245, 305
BstMWI GCNNNNNNNGC 3 cut(s) 205, 323, 471
BstSCI CCNGG 1 cut(s) 261
BstSLI GKGCMC 1 cut(s) 34
BstX2I RGATCY 1 cut(s) 497
BstYI RGATCY 1 cut(s) 497
BstZI CGGCCG 1 cut(s) 302
BsuRI GGCC 3 cut(s) 32, 208, 304
BtrI CACGTC 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 109
CfoI GCGC 1 cut(s) 507
Cfr13I GGNCC 5 cut(s) 30, 31, 44, 292, 489
CpoI CGGWCCG 1 cut(s) 292
CseI GACGC 1 cut(s) 342
CspI CGGWCCG 1 cut(s) 292
CviAII CATG 2 cut(s) 37, 104
CviJI RGCY 8 cut(s) 9, 32, 208, 267, 304, 361, 485, 544
CviKI_1 RGCY 8 cut(s) 9, 32, 208, 267, 304, 361, 485, 544
DinI GGCGCC 1 cut(s) 506
DpnI GATC 3 cut(s) 244, 300, 499
DpnII GATC 3 cut(s) 242, 298, 497
EaeI YGGCCR 1 cut(s) 302
EagI CGGCCG 1 cut(s) 302
Eam1104I CTCTTC 3 cut(s) 302, 534, 544
EarI CTCTTC 3 cut(s) 302, 534, 544
EciI GGCGGA 3 cut(s) 332, 387, 429
EclXI CGGCCG 1 cut(s) 302
Eco130I CCWWGG 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 34
Eco47I GGWCC 3 cut(s) 44, 292, 489
Eco52I CGGCCG 1 cut(s) 302
Eco72I CACGTG 1 cut(s) 381
EcoO109I RGGNCCY 1 cut(s) 44
EcoT14I CCWWGG 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 34
EgeI GGCGCC 1 cut(s) 506
EheI GGCGCC 1 cut(s) 506
ErhI CCWWGG 1 cut(s) 220
Esp3I CGTCTC 2 cut(s) 281, 431
FaeI CATG 2 cut(s) 40, 107
FaiI YATR 4 cut(s) 38, 105, 335, 396
FaqI GGGAC 1 cut(s) 30
FatI CATG 2 cut(s) 36, 103
FauI CCCGC 2 cut(s) 219, 244
Fnu4HI GCNGC 3 cut(s) 197, 351, 466
FriOI GRGCYC 1 cut(s) 34
Fsp4HI GCNGC 3 cut(s) 197, 351, 466
FspBI CTAG 1 cut(s) 221
GlaI GCGC 1 cut(s) 506
GluI GCNGC 3 cut(s) 197, 351, 466
HaeII RGCGCY 1 cut(s) 508
HaeIII GGCC 3 cut(s) 32, 208, 304
HapII CCGG 3 cut(s) 164, 262, 508
HgaI GACGC 1 cut(s) 342
HhaI GCGC 1 cut(s) 507
Hin1I GRCGYC 2 cut(s) 353, 505
Hin1II CATG 2 cut(s) 40, 107
Hin6I GCGC 1 cut(s) 505
HinP1I GCGC 1 cut(s) 505
HinfI GANTC 2 cut(s) 119, 552
HpaII CCGG 3 cut(s) 164, 262, 508
HphI GGTGA 2 cut(s) 355, 436
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 242, 489
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 1 cut(s) 115
Hpy99I CGWCG 4 cut(s) 101, 193, 196, 358
HpyAV CCTTC 4 cut(s) 34, 73, 146, 455
HpyCH4III ACNGT 1 cut(s) 189
HpyCH4IV ACGT 2 cut(s) 96, 380
HpyCH4V TGCA 2 cut(s) 132, 474
HpyF10VI GCNNNNNNNGC 3 cut(s) 205, 323, 471
HpySE526I ACGT 2 cut(s) 96, 380
Hsp92I GRCGYC 2 cut(s) 353, 505
Hsp92II CATG 2 cut(s) 40, 107
HspAI GCGC 1 cut(s) 505
KasI GGCGCC 1 cut(s) 504
KflI GGGWCCC 1 cut(s) 44
Kpn2I TCCGGA 1 cut(s) 163
Kzo9I GATC 3 cut(s) 242, 298, 497
LguI GCTCTTC 1 cut(s) 534
LmnI GCTCC 1 cut(s) 387
LpnPI CCDG 4 cut(s) 121, 177, 275, 521
LweI GCATC 1 cut(s) 335
MaeI CTAG 1 cut(s) 221
MaeII ACGT 2 cut(s) 96, 380
MalI GATC 3 cut(s) 244, 300, 499
MbiI CCGCTC 1 cut(s) 350
MboI GATC 3 cut(s) 242, 298, 497
MboII GAAGA 3 cut(s) 319, 551, 561
MflI RGATCY 1 cut(s) 497
MhlI GDGCHC 1 cut(s) 34
MluCI AATT 2 cut(s) 85, 200
Mly113I GGCGCC 1 cut(s) 505
MlyI GAGTC 2 cut(s) 113, 561
MroI TCCGGA 1 cut(s) 163
MseI TTAA 1 cut(s) 203
MspI CCGG 3 cut(s) 164, 262, 508
MspR9I CCNGG 1 cut(s) 263
MwoI GCNNNNNNNGC 3 cut(s) 205, 323, 471
NarI GGCGCC 1 cut(s) 505
NciI CCSGG 1 cut(s) 263
NdeII GATC 3 cut(s) 242, 298, 497
NlaIII CATG 2 cut(s) 40, 107
NlaIV GGNNCC 4 cut(s) 32, 45, 46, 506
NmeAIII GCCGAG 1 cut(s) 481
PciSI GCTCTTC 1 cut(s) 534
PcsI WCGNNNNNNNCGW 1 cut(s) 553
PkrI GCNGC 3 cut(s) 198, 352, 467
Ple19I CGATCG 1 cut(s) 245
PleI GAGTC 2 cut(s) 113, 560
PluTI GGCGCC 1 cut(s) 508
PmaCI CACGTG 1 cut(s) 381
PmlI CACGTG 1 cut(s) 381
PpsI GAGTC 2 cut(s) 113, 560
Ppu21I YACGTR 1 cut(s) 381
PpuMI RGGWCCY 1 cut(s) 44
Psp5II RGGWCCY 1 cut(s) 44
PspCI CACGTG 1 cut(s) 381
PspN4I GGNNCC 4 cut(s) 32, 45, 46, 506
PspOMI GGGCCC 1 cut(s) 30
PspPI GGNCC 5 cut(s) 30, 31, 44, 292, 489
PspPPI RGGWCCY 1 cut(s) 44
PsuI RGATCY 1 cut(s) 497
PvuI CGATCG 1 cut(s) 245
Rsr2I CGGWCCG 1 cut(s) 292
RsrII CGGWCCG 1 cut(s) 292
SapI GCTCTTC 1 cut(s) 534
SaqAI TTAA 1 cut(s) 203
SatI GCNGC 3 cut(s) 197, 351, 466
Sau3AI GATC 3 cut(s) 242, 298, 497
Sau96I GGNCC 5 cut(s) 30, 31, 44, 292, 489
SchI GAGTC 2 cut(s) 113, 561
ScrFI CCNGG 1 cut(s) 263
SduI GDGCHC 1 cut(s) 34
SetI ASST 8 cut(s) 63, 99, 148, 222, 345, 383, 409, 494
SfaNI GCATC 1 cut(s) 335
SfoI GGCGCC 1 cut(s) 506
SinI GGWCC 3 cut(s) 44, 292, 489
SmlI CTYRAG 2 cut(s) 362, 493
SmoI CTYRAG 2 cut(s) 362, 493
Sse9I AATT 2 cut(s) 85, 200
SspDI GGCGCC 1 cut(s) 504
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 1 cut(s) 261
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 1 cut(s) 189
TaiI ACGT 2 cut(s) 99, 383
TaqI TCGA 4 cut(s) 245, 356, 480, 547
TaqII GACCGA 2 cut(s) 89, 309
TasI AATT 2 cut(s) 85, 200
TauI GCSGC 3 cut(s) 199, 353, 468
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TspDTI ATGAA 1 cut(s) 53
TspGWI ACGGA 3 cut(s) 305, 455, 545
VpaK11BI GGWCC 3 cut(s) 44, 292, 489
XapI RAATTY 1 cut(s) 85
XmaJI CCTAGG 1 cut(s) 220
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.