Rh7BG077800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Reverse (-)
5527420 .. 5527593
174 bp
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UTR
Exon/CDS
Intron
Rh7BG077800.1

Sequence Viewer

Length: 174 bp
ATGGCCACCATAGCTCGCACTCTGCACCATCTGCTAGCGGAGGTCATCGACGGCGGCATCAAACAGCTTTTCAATCCTCCTTCGTCAAGCCCAAGATTCCGGCCACCATGCCCTCTTATACCGCCTCTTCCACCGCATCCAAACTCCAACTCCTCCACCCTTGTGTTGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.18

Weight (kDa)

10.04

Isoelectric Point (pI)

54.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021667)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004340.1_g000008 Rmu_sc0016065.1_g000001
rosa_roxburghii Rroxscaffold_5G00366770
rosa_samantha Rh1AG050700 Rh7BG077800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 38, 54, 122, 134
AcoI YGGCCR 2 cut(s) 3, 101
AgsI TTSAA 2 cut(s) 73, 169
AleI CACNNNNGTG 1 cut(s) 161
AluBI AGCT 2 cut(s) 14, 67
AluI AGCT 2 cut(s) 14, 67
AoxI GGCC 2 cut(s) 3, 101
AsuNHI GCTAGC 1 cut(s) 34
BalI TGGCCA 1 cut(s) 5
BccI CCATC 1 cut(s) 36
BceAI ACGGC 1 cut(s) 67
BfaI CTAG 1 cut(s) 35
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
BmsI GCATC 2 cut(s) 66, 145
BmtI GCTAGC 1 cut(s) 38
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
BseGI GGATG 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 142
BsgI GTGCAG 1 cut(s) 8
BshFI GGCC 2 cut(s) 5, 103
BsiSI CCGG 1 cut(s) 100
BsnI GGCC 2 cut(s) 5, 103
BspACI CCGC 4 cut(s) 38, 54, 122, 134
BspANI GGCC 2 cut(s) 5, 103
BspOI GCTAGC 1 cut(s) 38
Bst6I CTCTTC 1 cut(s) 132
BstAPI GCANNNNNTGC 1 cut(s) 31
BstC8I GCNNGC 2 cut(s) 16, 36
BstF5I GGATG 1 cut(s) 136
BstMWI GCNNNNNNNGC 2 cut(s) 11, 31
BsuRI GGCC 2 cut(s) 5, 103
BtsCI GGATG 1 cut(s) 136
Cac8I GCNNGC 2 cut(s) 16, 36
CviAII CATG 1 cut(s) 108
CviJI RGCY 5 cut(s) 5, 14, 67, 90, 103
CviKI_1 RGCY 5 cut(s) 5, 14, 67, 90, 103
EaeI YGGCCR 2 cut(s) 3, 101
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
FaeI CATG 1 cut(s) 111
FaiI YATR 3 cut(s) 11, 109, 119
FatI CATG 1 cut(s) 107
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 55
FspBI CTAG 1 cut(s) 35
GluI GCNGC 1 cut(s) 55
HaeIII GGCC 2 cut(s) 5, 103
HapII CCGG 1 cut(s) 100
Hin1II CATG 1 cut(s) 111
HinfI GANTC 1 cut(s) 96
HpaII CCGG 1 cut(s) 100
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 90
HpyCH4V TGCA 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 31
Hsp92II CATG 1 cut(s) 111
LpnPI CCDG 1 cut(s) 113
LweI GCATC 2 cut(s) 66, 145
MaeI CTAG 1 cut(s) 35
MboII GAAGA 1 cut(s) 119
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 5 cut(s) 34, 87, 123, 135, 163
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 161
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 100
MwoI GCNNNNNNNGC 2 cut(s) 11, 31
NheI GCTAGC 1 cut(s) 34
NlaIII CATG 1 cut(s) 111
OliI CACNNNNGTG 1 cut(s) 161
PfeI GAWTC 1 cut(s) 96
PkrI GCNGC 1 cut(s) 56
RseI CAYNNNNRTG 1 cut(s) 161
SatI GCNGC 1 cut(s) 55
SetI ASST 3 cut(s) 16, 45, 69
SfaNI GCATC 2 cut(s) 66, 145
SgeI CNNG 6 cut(s) 27, 47, 99, 105, 112, 120
SmiMI CAYNNNNRTG 1 cut(s) 161
SsiI CCGC 4 cut(s) 38, 54, 122, 134
SspMI CTAG 1 cut(s) 35
TaqI TCGA 1 cut(s) 48
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 1 cut(s) 96
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.