Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004345.1

Orthogroup ID

OG0025582

Physical Location & Seq

Genomic Coordinates Reverse (-)

34079 .. 34303

Gene Structure 225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004345.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

atggagcagttcccggagaccgccgcctccatcgtctccttcaaggttgactccaacgtcatgtccctcgacgggcgcaacttcctcgaaaccggcgccgagatctgcgactacggcaagctccacgtcaaggtgaggaagtccaacgcgtccagacggtcgctctcggcaatgacacctcgcccgtccaacctcaccggagagagagagagagagagagtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009921 GO:0009926 GO:0009942 GO:0009958 GO:0009966 GO:0009986 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0012506 GO:0015562 GO:0016020 GO:0016043 GO:0016049 GO:0016328 GO:0021700 GO:0022414 GO:0022622 GO:0022857 GO:0023051 GO:0030054 GO:0030154 GO:0031090 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048583 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048767 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060560 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0080161 GO:0090558 GO:0090627 GO:0098796 GO:0098797 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

74

Amino Acids

8.3

Weight (kDa)

9.03

Isoelectric Point (pI)

34.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025582)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004345.1_g000012
rosa_samantha	Rh1AG319000 Rh2BG247800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
AccB1I	GGYRCC	1 cut(s)	95
AccII	CGCG	1 cut(s)	149
AciI	CCGC	2 cut(s)	21, 24
AcyI	GRCGYC	1 cut(s)	96
AfiI	CCNNNNNNNGG	2 cut(s)	72, 130
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	43
AjiI	CACGTC	1 cut(s)	127
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
Alw26I	GTCTC	2 cut(s)	11, 40
AspLEI	GCGC	2 cut(s)	78, 98
AsuC2I	CCSGG	1 cut(s)	14
AsuHPI	GGTGA	2 cut(s)	145, 187
BanI	GGYRCC	1 cut(s)	95
BccI	CCATC	1 cut(s)	38
BceAI	ACGGC	1 cut(s)	130
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BcnI	CCSGG	1 cut(s)	14
BcoDI	GTCTC	2 cut(s)	11, 40
BfoI	RGCGCY	1 cut(s)	99
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	14
BmgBI	CACGTC	1 cut(s)	127
BmiI	GGNNCC	1 cut(s)	97
BmrFI	CCNGG	1 cut(s)	14
BpuMI	CCSGG	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	96
BsaI	GGTCTC	1 cut(s)	11
BsaWI	WCCGGW	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 130
Bse118I	RCCGGY	1 cut(s)	92
Bse3DI	GCAATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	2 cut(s)	72, 130
BseMI	GCAATG	1 cut(s)	177
Bsh1236I	CGCG	1 cut(s)	149
Bsh1285I	CGRYCG	1 cut(s)	161
BshNI	GGYRCC	1 cut(s)	95
BsiEI	CGRYCG	1 cut(s)	161
BsiSI	CCGG	3 cut(s)	14, 93, 198
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	2 cut(s)	72, 130
BsmAI	GTCTC	2 cut(s)	11, 40
BsmBI	CGTCTC	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	49
Bso31I	GGTCTC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	102
BspACI	CCGC	2 cut(s)	21, 24
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	1 cut(s)	97
BspT107I	GGYRCC	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	92
BssMI	GATC	1 cut(s)	102
BssNI	GRCGYC	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	159
BstACI	GRCGYC	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	119
BstFNI	CGCG	1 cut(s)	149
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	2 cut(s)	78, 98
BstKTI	GATC	1 cut(s)	105
BstMAI	GTCTC	2 cut(s)	11, 40
BstMBI	GATC	1 cut(s)	102
BstMCI	CGRYCG	1 cut(s)	161
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	12
BstUI	CGCG	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BtrI	CACGTC	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	119
CfoI	GCGC	2 cut(s)	78, 98
Cfr10I	RCCGGY	1 cut(s)	92
CseI	GACGC	1 cut(s)	138
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	1 cut(s)	121
CviKI_1	RGCY	1 cut(s)	121
DinI	GGCGCC	1 cut(s)	97
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eco31I	GGTCTC	1 cut(s)	11
EgeI	GGCGCC	1 cut(s)	97
EheI	GGCGCC	1 cut(s)	97
Esp3I	CGTCTC	1 cut(s)	40
FaeI	CATG	1 cut(s)	64
FaiI	YATR	2 cut(s)	62, 223
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	1 cut(s)	60
Fnu4HI	GCNGC	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	24
GlaI	GCGC	2 cut(s)	77, 97
GluI	GCNGC	1 cut(s)	24
HaeII	RGCGCY	1 cut(s)	99
HapII	CCGG	3 cut(s)	14, 93, 198
HgaI	GACGC	1 cut(s)	138
HhaI	GCGC	2 cut(s)	78, 98
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	1 cut(s)	64
Hin6I	GCGC	2 cut(s)	76, 96
HinP1I	GCGC	2 cut(s)	76, 96
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	1 cut(s)	50
HpaII	CCGG	3 cut(s)	14, 93, 198
HphI	GGTGA	2 cut(s)	145, 187
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188III	TCNNGA	1 cut(s)	153
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4IV	ACGT	2 cut(s)	57, 126
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
HpySE526I	ACGT	2 cut(s)	57, 126
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	64
HspAI	GCGC	2 cut(s)	76, 96
KasI	GGCGCC	1 cut(s)	95
Kzo9I	GATC	1 cut(s)	102
LmnI	GCTCC	2 cut(s)	4, 126
LpnPI	CCDG	4 cut(s)	27, 106, 166, 211
MaeII	ACGT	2 cut(s)	57, 126
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MflI	RGATCY	1 cut(s)	102
MluI	ACGCGT	1 cut(s)	147
Mly113I	GGCGCC	1 cut(s)	96
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	3 cut(s)	78, 168, 213
MnlI	CCTC	6 cut(s)	37, 77, 95, 129, 189, 203
MspI	CCGG	3 cut(s)	14, 93, 198
MspR9I	CCNGG	1 cut(s)	14
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	114
NarI	GGCGCC	1 cut(s)	96
NciI	CCSGG	1 cut(s)	14
NdeII	GATC	1 cut(s)	102
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	1 cut(s)	97
NmeAIII	GCCGAG	2 cut(s)	124, 146
PfoI	TCCNGGA	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	25
PleI	GAGTC	1 cut(s)	44
PluTI	GGCGCC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	102
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	1 cut(s)	102
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	14
SetI	ASST	7 cut(s)	48, 60, 123, 129, 135, 181, 195
SfoI	GGCGCC	1 cut(s)	97
SsiI	CCGC	2 cut(s)	21, 24
SspDI	GGCGCC	1 cut(s)	95
StyD4I	CCNGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	159
TaiI	ACGT	2 cut(s)	60, 129
TaqI	TCGA	2 cut(s)	69, 87
TauI	GCSGC	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.