Rh2BG247800

May act as a component of the auxin efflux carrier

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
25237169 .. 25237387
219 bp
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UTR
Exon/CDS
Intron
Rh2BG247800.1

Sequence Viewer

Length: 219 bp
ATGCTGCTGATAATGGAGCAGTTCCCGAAGACCTCCGCCTCCATCGTCTCCTTCAAGGTCGACTCCGACGTCATGTTCCTCGACGGCCGCGACTTCCTCAAAACAGACGCCGAGATTGGCGACGACGGGAAGCTCCACGTCAAGGTGAGGAAGTCCAACGCGTCTAGACGGTCGCTCTCAACAATGACGCCTCGCCTGTCCAACCTCACTGGAGCGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

72

Amino Acids

7.98

Weight (kDa)

9.3

Isoelectric Point (pI)

19.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025582)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004345.1_g000012
rosa_samantha Rh1AG319000 Rh2BG247800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 68
AatII GACGTC 1 cut(s) 72
AccI GTMKAC 1 cut(s) 60
AccII CGCG 2 cut(s) 90, 161
AciI CCGC 2 cut(s) 36, 88
AcoI YGGCCR 1 cut(s) 85
AcyI GRCGYC 3 cut(s) 69, 108, 188
AfiI CCNNNNNNNGG 1 cut(s) 142
AflIII ACRYGT 1 cut(s) 159
AgsI TTSAA 1 cut(s) 55
AjiI CACGTC 1 cut(s) 139
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw26I GTCTC 1 cut(s) 52
AoxI GGCC 1 cut(s) 85
ApeKI GCWGC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 35
BccI CCATC 1 cut(s) 50
BceAI ACGGC 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 52
BfaI CTAG 1 cut(s) 165
BisI GCNGC 2 cut(s) 5, 88
BlsI GCNGC 2 cut(s) 6, 89
BmgBI CACGTC 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 35
BsaHI GRCGYC 3 cut(s) 69, 108, 188
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse1I ACTGG 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 214
BseX3I CGGCCG 1 cut(s) 85
Bsh1236I CGCG 2 cut(s) 90, 161
Bsh1285I CGRYCG 2 cut(s) 88, 173
BshFI GGCC 1 cut(s) 87
BsiEI CGRYCG 2 cut(s) 88, 173
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 52
BsmBI CGTCTC 1 cut(s) 52
BsnI GGCC 1 cut(s) 87
BspACI CCGC 2 cut(s) 36, 88
BspANI GGCC 1 cut(s) 87
BspFNI CGCG 2 cut(s) 90, 161
BsrI ACTGG 1 cut(s) 214
BssNI GRCGYC 3 cut(s) 69, 108, 188
Bst4CI ACNGT 1 cut(s) 171
BstACI GRCGYC 3 cut(s) 69, 108, 188
BstFNI CGCG 2 cut(s) 90, 161
BstMAI GTCTC 1 cut(s) 52
BstMCI CGRYCG 2 cut(s) 88, 173
BstUI CGCG 2 cut(s) 90, 161
BstV2I GAAGAC 1 cut(s) 35
BstZI CGGCCG 1 cut(s) 85
BsuRI GGCC 1 cut(s) 87
BtrI CACGTC 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 207
CseI GACGC 3 cut(s) 116, 150, 196
CviAII CATG 1 cut(s) 73
CviJI RGCY 2 cut(s) 87, 133
CviKI_1 RGCY 2 cut(s) 87, 133
DrdI GACNNNNNNGTC 1 cut(s) 68
DseDI GACNNNNNNGTC 1 cut(s) 68
EaeI YGGCCR 1 cut(s) 85
EagI CGGCCG 1 cut(s) 85
EciI GGCGGA 1 cut(s) 25
EclXI CGGCCG 1 cut(s) 85
Eco52I CGGCCG 1 cut(s) 85
Esp3I CGTCTC 1 cut(s) 52
FaeI CATG 1 cut(s) 76
FaiI YATR 1 cut(s) 74
FatI CATG 1 cut(s) 72
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 2 cut(s) 5, 88
Fsp4HI GCNGC 2 cut(s) 5, 88
FspBI CTAG 1 cut(s) 165
GluI GCNGC 2 cut(s) 5, 88
HaeIII GGCC 1 cut(s) 87
HgaI GACGC 3 cut(s) 116, 150, 196
Hin1I GRCGYC 3 cut(s) 69, 108, 188
Hin1II CATG 1 cut(s) 76
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 1 cut(s) 62
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 2 cut(s) 25, 165
Hpy8I GTNNAC 1 cut(s) 61
Hpy99I CGWCG 4 cut(s) 71, 86, 125, 128
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4IV ACGT 2 cut(s) 69, 138
HpySE526I ACGT 2 cut(s) 69, 138
Hsp92I GRCGYC 3 cut(s) 69, 108, 188
Hsp92II CATG 1 cut(s) 76
LmnI GCTCC 3 cut(s) 16, 138, 212
LpnPI CCDG 2 cut(s) 195, 209
MaeI CTAG 1 cut(s) 165
MaeII ACGT 2 cut(s) 69, 138
MboII GAAGA 1 cut(s) 40
MluI ACGCGT 1 cut(s) 159
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 2 cut(s) 90, 180
MnlI CCTC 7 cut(s) 43, 49, 89, 107, 141, 201, 215
MvnI CGCG 2 cut(s) 90, 161
NlaIII CATG 1 cut(s) 76
NmeAIII GCCGAG 1 cut(s) 136
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 87
PkrI GCNGC 2 cut(s) 6, 89
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
SalI GTCGAC 1 cut(s) 59
SatI GCNGC 2 cut(s) 5, 88
SchI GAGTC 1 cut(s) 56
SetI ASST 7 cut(s) 35, 60, 72, 135, 141, 147, 207
SsiI CCGC 2 cut(s) 36, 88
SspMI CTAG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 171
TaiI ACGT 2 cut(s) 72, 141
TaqI TCGA 2 cut(s) 60, 81
TauI GCSGC 1 cut(s) 90
TscAI CASTG 1 cut(s) 214
TseI GCWGC 1 cut(s) 4
TspRI CASTG 1 cut(s) 214
XbaI TCTAGA 1 cut(s) 164
XmiI GTMKAC 1 cut(s) 60
XspI CTAG 1 cut(s) 165
ZraI GACGTC 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.