Rh1AG319000

May act as a component of the auxin efflux carrier

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
55332185 .. 55333100
916 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG319000.1

Sequence Viewer

Length: 210 bp
ATGGAGCAGTTCCCGGAGACCGTTCCCTCCATCGTCTCCTTCAAGGTCGAGTCCGACGTCATGTTCCTTGACGGCAGCGACTTCCTCAAAACCGACGCCGAGATCGGCGACGGCAAGCTCCACGTCAAGGTGTGGAAGTCCAACGCGTCCAGACGGTCGCTCTCGGCAATGACTCCTTGCGCCGTCCAACCTCACCGGAGCGAAAATTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

69

Amino Acids

7.68

Weight (kDa)

5.53

Isoelectric Point (pI)

44.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025582)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004345.1_g000012
rosa_samantha Rh1AG319000 Rh2BG247800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 60
AccII CGCG 1 cut(s) 146
AcyI GRCGYC 2 cut(s) 57, 96
AfiI CCNNNNNNNGG 1 cut(s) 127
AflIII ACRYGT 1 cut(s) 144
AgsI TTSAA 1 cut(s) 43
AjiI CACGTC 1 cut(s) 124
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw26I GTCTC 2 cut(s) 11, 40
ApeKI GCWGC 1 cut(s) 75
AspLEI GCGC 1 cut(s) 182
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 185
BbvI GCAGC 1 cut(s) 87
BccI CCATC 1 cut(s) 38
BceAI ACGGC 3 cut(s) 88, 127, 167
BcnI CCSGG 1 cut(s) 14
BcoDI GTCTC 2 cut(s) 11, 40
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 14
BmgBI CACGTC 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 14
BpuMI CCSGG 1 cut(s) 14
BsaHI GRCGYC 2 cut(s) 57, 96
BsaI GGTCTC 1 cut(s) 11
BsaWI WCCGGW 1 cut(s) 195
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse3DI GCAATG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMI GCAATG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 146
Bsh1285I CGRYCG 1 cut(s) 158
BsiEI CGRYCG 1 cut(s) 158
BsiSI CCGG 2 cut(s) 14, 196
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 2 cut(s) 11, 40
BsmBI CGTCTC 1 cut(s) 40
Bso31I GGTCTC 1 cut(s) 11
Bsp143I GATC 1 cut(s) 102
BspFNI CGCG 1 cut(s) 146
BspTNI GGTCTC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 174
BssMI GATC 1 cut(s) 102
BssNI GRCGYC 2 cut(s) 57, 96
Bst4CI ACNGT 2 cut(s) 22, 156
BstACI GRCGYC 2 cut(s) 57, 96
BstC8I GCNNGC 1 cut(s) 116
BstFNI CGCG 1 cut(s) 146
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 1 cut(s) 105
BstMAI GTCTC 2 cut(s) 11, 40
BstMBI GATC 1 cut(s) 102
BstMCI CGRYCG 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 12
BstUI CGCG 1 cut(s) 146
BstV1I GCAGC 1 cut(s) 87
BtrI CACGTC 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 116
CfoI GCGC 1 cut(s) 182
CseI GACGC 2 cut(s) 104, 135
CviAII CATG 1 cut(s) 61
CviJI RGCY 1 cut(s) 118
CviKI_1 RGCY 1 cut(s) 118
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
Eco31I GGTCTC 1 cut(s) 11
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 1 cut(s) 64
FaiI YATR 1 cut(s) 62
FatI CATG 1 cut(s) 60
Fnu4HI GCNGC 1 cut(s) 76
Fsp4HI GCNGC 1 cut(s) 76
GlaI GCGC 1 cut(s) 181
GluI GCNGC 1 cut(s) 76
HapII CCGG 2 cut(s) 14, 196
HgaI GACGC 2 cut(s) 104, 135
HhaI GCGC 1 cut(s) 182
Hin1I GRCGYC 2 cut(s) 57, 96
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HinfI GANTC 2 cut(s) 50, 172
HpaII CCGG 2 cut(s) 14, 196
HphI GGTGA 1 cut(s) 185
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 1 cut(s) 150
Hpy99I CGWCG 3 cut(s) 59, 98, 113
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 2 cut(s) 22, 156
HpyCH4IV ACGT 2 cut(s) 57, 123
HpySE526I ACGT 2 cut(s) 57, 123
Hsp92I GRCGYC 2 cut(s) 57, 96
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 1 cut(s) 180
Kzo9I GATC 1 cut(s) 102
LmnI GCTCC 3 cut(s) 4, 123, 198
LpnPI CCDG 2 cut(s) 27, 163
Lsp1109I GCAGC 1 cut(s) 87
MaeII ACGT 2 cut(s) 57, 123
MalI GATC 1 cut(s) 104
MboI GATC 1 cut(s) 102
MluCI AATT 1 cut(s) 205
MluI ACGCGT 1 cut(s) 144
MlyI GAGTC 2 cut(s) 59, 166
MmeI TCCRAC 2 cut(s) 78, 165
MnlI CCTC 3 cut(s) 37, 95, 201
MspI CCGG 2 cut(s) 14, 196
MspR9I CCNGG 1 cut(s) 14
MvnI CGCG 1 cut(s) 146
NciI CCSGG 1 cut(s) 14
NdeII GATC 1 cut(s) 102
NlaIII CATG 1 cut(s) 64
NmeAIII GCCGAG 2 cut(s) 124, 143
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PfoI TCCNGGA 1 cut(s) 12
PkrI GCNGC 1 cut(s) 77
PleI GAGTC 2 cut(s) 58, 166
PpsI GAGTC 2 cut(s) 58, 166
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 1 cut(s) 102
SchI GAGTC 2 cut(s) 59, 166
ScrFI CCNGG 1 cut(s) 14
SetI ASST 6 cut(s) 48, 60, 120, 126, 132, 193
Sse9I AATT 1 cut(s) 205
StyD4I CCNGG 1 cut(s) 12
TaaI ACNGT 2 cut(s) 22, 156
TaiI ACGT 2 cut(s) 60, 126
TaqI TCGA 1 cut(s) 48
TasI AATT 1 cut(s) 205
TseI GCWGC 1 cut(s) 75
ZraI GACGTC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.